RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 TATP17735 454 aaPredicted RBP7.65□□□□□ -1.18
USP28-207ENST00000538475 RASA1P20936 1047 aa7.65□□□□□ -1.18
USP28-207ENST00000538475 PIP4K2BP78356 416 aa7.65□□□□□ -1.18
USP28-207ENST00000538475 DDR1Q08345 913 aa7.65□□□□□ -1.18
USP28-207ENST00000538475 GAS6Q14393 721 aa7.65□□□□□ -1.18
USP28-207ENST00000538475 LBRQ14739 615 aaKnown RBP7.65□□□□□ -1.18
USP28-207ENST00000538475 PWP2Q15269 919 aaKnown RBP7.65□□□□□ -1.18
USP28-207ENST00000538475 KIF4BQ2VIQ3 1234 aa7.65□□□□□ -1.18
USP28-207ENST00000538475 BEND6Q5SZJ8 279 aaPredicted RBP7.65□□□□□ -1.18
USP28-207ENST00000538475 USPL1Q5W0Q7 1092 aa7.65□□□□□ -1.18
USP28-207ENST00000538475 CREB3L3Q68CJ9 461 aa7.65□□□□□ -1.18
USP28-207ENST00000538475 LARP1Q6PKG0 1096 aaKnown RBP7.65□□□□□ -1.18
USP28-207ENST00000538475 GBP6Q6ZN66 633 aa7.65□□□□□ -1.18
USP28-207ENST00000538475 POGZQ7Z3K3 1410 aa7.65□□□□□ -1.18
USP28-207ENST00000538475 TMC6Q7Z403 805 aa7.65□□□□□ -1.18
USP28-207ENST00000538475 UNC5CLQ8IV45 518 aa7.65□□□□□ -1.18
USP28-207ENST00000538475 SVOPQ8N4V2 548 aa7.65□□□□□ -1.18
USP28-207ENST00000538475 C1orf216Q8TAB5 229 aa7.65□□□□□ -1.18
USP28-207ENST00000538475 KCNG4Q8TDN1 519 aa7.65□□□□□ -1.18
USP28-207ENST00000538475 MRPS27Q92552 414 aaKnown RBP7.65□□□□□ -1.18
USP28-207ENST00000538475 THUMPD2Q9BTF0 503 aaKnown RBP7.65□□□□□ -1.18
USP28-207ENST00000538475 XPO4Q9C0E2 1151 aaKnown RBP7.65□□□□□ -1.18
USP28-207ENST00000538475 LCMT1Q9UIC8 334 aa7.65□□□□□ -1.18
USP28-207ENST00000538475 TPCN1Q9ULQ1 816 aa7.65□□□□□ -1.18
USP28-207ENST00000538475 L1RE1Q9UN81 338 aa7.65□□□□□ -1.18
USP28-207ENST00000538475 IQSEC3Q9UPP2 1182 aaPredicted RBP7.65□□□□□ -1.18
USP28-207ENST00000538475 PHF24Q9UPV7 400 aa7.65□□□□□ -1.18
USP28-207ENST00000538475 KIAA1024Q9UPX6 916 aa7.65□□□□□ -1.18
USP28-207ENST00000538475 SPEF2Q9C093 1822 aa7.64□□□□□ -1.19
USP28-207ENST00000538475 RIMBP3CA6NJZ7 1639 aa7.64□□□□□ -1.19
USP28-207ENST00000538475 RIMBP3BA6NNM3 1639 aa7.64□□□□□ -1.19
USP28-207ENST00000538475 RIMBP3Q9UFD9 1639 aa7.64□□□□□ -1.19
USP28-207ENST00000538475 CEMIPQ8WUJ3 1361 aa7.64□□□□□ -1.19
USP28-207ENST00000538475 MAP3K15Q6ZN16 1313 aa7.64□□□□□ -1.19
USP28-207ENST00000538475 SRRM3A6NNA2 597 aaPredicted RBP7.64□□□□□ -1.19
USP28-207ENST00000538475 SHOX2O60902 331 aaPredicted RBP7.64□□□□□ -1.19
USP28-207ENST00000538475 ADAMTS2O95450 1211 aa7.64□□□□□ -1.19
USP28-207ENST00000538475 HMOX1P09601 288 aa7.64□□□□□ -1.19
USP28-207ENST00000538475 MX2P20592 715 aa7.64□□□□□ -1.19
USP28-207ENST00000538475 LMOD1P29536 600 aaPredicted RBP7.64□□□□□ -1.19
USP28-207ENST00000538475 AMPHP49418 695 aa7.64□□□□□ -1.19
USP28-207ENST00000538475 SRSF11Q05519 484 aaKnown RBP7.64□□□□□ -1.19
USP28-207ENST00000538475 WHAMMP3Q1A5X7 153 aa7.64□□□□□ -1.19
USP28-207ENST00000538475 ARSJQ5FYB0 599 aaPredicted RBP7.64□□□□□ -1.19
USP28-207ENST00000538475 WDR93Q6P2C0 686 aa7.64□□□□□ -1.19
USP28-207ENST00000538475 VSTM4Q8IW00 320 aa7.64□□□□□ -1.19
USP28-207ENST00000538475 TNS4Q8IZW8 715 aa7.64□□□□□ -1.19
USP28-207ENST00000538475 FMR1NBQ8N0W7 255 aaPredicted RBP7.64□□□□□ -1.19
USP28-207ENST00000538475 MICALL1Q8N3F8 863 aa7.64□□□□□ -1.19
USP28-207ENST00000538475 AOPEPQ8N6M6 819 aa7.64□□□□□ -1.19
USP28-207ENST00000538475 RPGRIP1Q96KN7 1286 aa7.64□□□□□ -1.19
USP28-207ENST00000538475 CARD10Q9BWT7 1032 aa7.64□□□□□ -1.19
USP28-207ENST00000538475 CDK19Q9BWU1 502 aa7.64□□□□□ -1.19
USP28-207ENST00000538475 ECHDC1Q9NTX5 307 aa7.64□□□□□ -1.19
USP28-207ENST00000538475 RTEL1Q9NZ71 1219 aa7.64□□□□□ -1.19
USP28-207ENST00000538475 RAI14Q9P0K7 980 aa7.64□□□□□ -1.19
USP28-207ENST00000538475 SCHIP1Q9P0W5 487 aaPredicted RBP7.64□□□□□ -1.19
USP28-207ENST00000538475 CDC23Q9UJX2 597 aa7.64□□□□□ -1.19
USP28-207ENST00000538475 GGA2Q9UJY4 613 aa7.64□□□□□ -1.19
USP28-207ENST00000538475 PPP2R2CQ9Y2T4 447 aa7.64□□□□□ -1.19
USP28-207ENST00000538475 USP3Q9Y6I4 520 aa7.64□□□□□ -1.19
USP28-207ENST00000538475 DDX60Q8IY21 1712 aaKnown RBP7.64□□□□□ -1.19
USP28-207ENST00000538475 NCAPD2Q15021 1401 aa7.63□□□□□ -1.19
USP28-207ENST00000538475 PNMA6EA0A0J9YXQ4 647 aa7.63□□□□□ -1.19
USP28-207ENST00000538475 SLC27A2O14975 620 aa7.63□□□□□ -1.19
USP28-207ENST00000538475 NPHP1O15259 732 aa7.63□□□□□ -1.19
USP28-207ENST00000538475 ERLIN2O94905 339 aa7.63□□□□□ -1.19
USP28-207ENST00000538475 HOXB7P09629 217 aa7.63□□□□□ -1.19
USP28-207ENST00000538475 SLURP2P0DP57 97 aa7.63□□□□□ -1.19
USP28-207ENST00000538475 CHMP4BP1P59074 171 aa7.63□□□□□ -1.19
USP28-207ENST00000538475 FANCCQ00597 558 aa7.63□□□□□ -1.19
USP28-207ENST00000538475 TBX2Q13207 712 aaPredicted RBP7.63□□□□□ -1.19
USP28-207ENST00000538475 KRT24Q2M2I5 525 aa7.63□□□□□ -1.19
USP28-207ENST00000538475 HSP90AB3PQ58FF7 597 aa7.63□□□□□ -1.19
USP28-207ENST00000538475 PRPF40BQ6NWY9 871 aaKnown RBP7.63□□□□□ -1.19
USP28-207ENST00000538475 LRRC31Q6UY01 552 aa7.63□□□□□ -1.19
USP28-207ENST00000538475 B4GALNT4Q76KP1 1039 aa7.63□□□□□ -1.19
USP28-207ENST00000538475 WAPLQ7Z5K2 1190 aa7.63□□□□□ -1.19
USP28-207ENST00000538475 CLASRPQ8N2M8 674 aaKnown RBP7.63□□□□□ -1.19
USP28-207ENST00000538475 FBXL16Q8N461 479 aa7.63□□□□□ -1.19
USP28-207ENST00000538475 CCDC51Q96ER9 411 aa7.63□□□□□ -1.19
USP28-207ENST00000538475 COG3Q96JB2 828 aa7.63□□□□□ -1.19
USP28-207ENST00000538475 SDF4Q9BRK5 362 aa7.63□□□□□ -1.19
USP28-207ENST00000538475 IFNKQ9P0W0 207 aa7.63□□□□□ -1.19
USP28-207ENST00000538475 VPS18Q9P253 973 aa7.63□□□□□ -1.19
USP28-207ENST00000538475 ZNF232Q9UNY5 417 aa7.63□□□□□ -1.19
USP28-207ENST00000538475 CHMP3Q9Y3E7 222 aa7.63□□□□□ -1.19
USP28-207ENST00000538475 RBM8AQ9Y5S9 174 aaKnown RBP7.63□□□□□ -1.19
USP28-207ENST00000538475 GJA3Q9Y6H8 435 aa7.63□□□□□ -1.19
USP28-207ENST00000538475 KDM3BQ7LBC6 1761 aa7.63□□□□□ -1.19
USP28-207ENST00000538475 A2ML1A8K2U0 1454 aa7.62□□□□□ -1.19
USP28-207ENST00000538475 KDM6AO15550 1401 aaPredicted RBP7.62□□□□□ -1.19
USP28-207ENST00000538475 NPHP4O75161 1426 aaPredicted RBP7.62□□□□□ -1.19
USP28-207ENST00000538475 MED23Q9ULK4 1368 aa7.62□□□□□ -1.19
USP28-207ENST00000538475 FAM237AA0A1B0GTK4 181 aa7.62□□□□□ -1.19
USP28-207ENST00000538475 TARSL2A2RTX5 802 aaKnown RBP7.62□□□□□ -1.19
USP28-207ENST00000538475 VWA3AA6NCI4 1184 aa7.62□□□□□ -1.19
USP28-207ENST00000538475 H3BQF6 201 aa7.62□□□□□ -1.19
USP28-207ENST00000538475 EBAG9O00559 213 aa7.62□□□□□ -1.19
USP28-207ENST00000538475 PPP1R12AO14974 1030 aaPredicted RBP7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms