RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 PLEKHA8P1O95397 391 aa12.38□□□□□ -0.43
CLIP1-210ENST00000538120 SLC3A2P08195 630 aaKnown RBP12.38□□□□□ -0.43
CLIP1-210ENST00000538120 NPR1P16066 1061 aa12.38□□□□□ -0.43
CLIP1-210ENST00000538120 BTDP43251 543 aa12.38□□□□□ -0.43
CLIP1-210ENST00000538120 PKN1Q16512 942 aa12.38□□□□□ -0.43
CLIP1-210ENST00000538120 RCSD1Q6JBY9 416 aa12.38□□□□□ -0.43
CLIP1-210ENST00000538120 FLAD1Q8NFF5 587 aa12.38□□□□□ -0.43
CLIP1-210ENST00000538120 TGFBRAP1Q8WUH2 860 aa12.38□□□□□ -0.43
CLIP1-210ENST00000538120 FAM163AQ96GL9 167 aaPredicted RBP12.38□□□□□ -0.43
CLIP1-210ENST00000538120 ROBO3Q96MS0 1386 aa12.38□□□□□ -0.43
CLIP1-210ENST00000538120 BTBD18B2RXH4 712 aa12.37□□□□□ -0.43
CLIP1-210ENST00000538120 WDHD1O75717 1129 aaPredicted RBP12.37□□□□□ -0.43
CLIP1-210ENST00000538120 ZSCAN20P17040 1043 aaPredicted RBP12.37□□□□□ -0.43
CLIP1-210ENST00000538120 PDE4BQ07343 736 aa12.37□□□□□ -0.43
CLIP1-210ENST00000538120 LRMPQ12912 555 aa12.37□□□□□ -0.43
CLIP1-210ENST00000538120 SF3A1Q15459 793 aaKnown RBP12.37□□□□□ -0.43
CLIP1-210ENST00000538120 MFSD14BQ5SR56 506 aa12.37□□□□□ -0.43
CLIP1-210ENST00000538120 CC2D2BQ6DHV5 1058 aa12.37□□□□□ -0.43
CLIP1-210ENST00000538120 MRPS27Q92552 414 aaKnown RBP12.37□□□□□ -0.43
CLIP1-210ENST00000538120 RNF26Q9BY78 433 aaPredicted RBP12.37□□□□□ -0.43
CLIP1-210ENST00000538120 NRBP1Q9UHY1 535 aa12.37□□□□□ -0.43
CLIP1-210ENST00000538120 RIMBP2O15034 1052 aa12.37□□□□□ -0.43
CLIP1-210ENST00000538120 DDAH1O94760 285 aa12.37□□□□□ -0.43
CLIP1-210ENST00000538120 PLCD1P51178 756 aa12.37□□□□□ -0.43
CLIP1-210ENST00000538120 NDUFA8P51970 172 aa12.37□□□□□ -0.43
CLIP1-210ENST00000538120 RHBDL3P58872 404 aa12.37□□□□□ -0.43
CLIP1-210ENST00000538120 CCDC73Q6ZRK6 1079 aa12.37□□□□□ -0.43
CLIP1-210ENST00000538120 MAPKAPK5Q8IW41 473 aa12.37□□□□□ -0.43
CLIP1-210ENST00000538120 IL17RBQ9NRM6 502 aa12.37□□□□□ -0.43
CLIP1-210ENST00000538120 GAKO14976 1311 aa12.37□□□□□ -0.43
CLIP1-210ENST00000538120 A0A1B0GVL5 298 aa12.36□□□□□ -0.43
CLIP1-210ENST00000538120 PRPF3O43395 683 aaKnown RBP12.36□□□□□ -0.43
CLIP1-210ENST00000538120 TOB1P50616 345 aaPredicted RBP12.36□□□□□ -0.43
CLIP1-210ENST00000538120 MSL1Q68DK7 614 aa12.36□□□□□ -0.43
CLIP1-210ENST00000538120 NOSTRINQ8IVI9 506 aa12.36□□□□□ -0.43
CLIP1-210ENST00000538120 DIS3L2Q8IYB7 885 aaKnown RBP12.36□□□□□ -0.43
CLIP1-210ENST00000538120 FAM200AQ8TCP9 573 aa12.36□□□□□ -0.43
CLIP1-210ENST00000538120 RBM28Q9NW13 759 aaKnown RBP12.36□□□□□ -0.43
CLIP1-210ENST00000538120 TSPY2A6NKD2 308 aa12.36□□□□□ -0.43
CLIP1-210ENST00000538120 CALM1P0DP23 149 aa12.36□□□□□ -0.43
CLIP1-210ENST00000538120 CALM2P0DP24 149 aa12.36□□□□□ -0.43
CLIP1-210ENST00000538120 CALM3P0DP25 149 aa12.36□□□□□ -0.43
CLIP1-210ENST00000538120 PDE6BP35913 854 aa12.36□□□□□ -0.43
CLIP1-210ENST00000538120 GTF2IP78347 998 aa12.36□□□□□ -0.43
CLIP1-210ENST00000538120 TFAP4Q01664 338 aa12.36□□□□□ -0.43
CLIP1-210ENST00000538120 ANO6Q4KMQ2 910 aa12.36□□□□□ -0.43
CLIP1-210ENST00000538120 TMTC3Q6ZXV5 915 aa12.36□□□□□ -0.43
CLIP1-210ENST00000538120 OXER1Q8TDS5 423 aa12.36□□□□□ -0.43
CLIP1-210ENST00000538120 TBC1D22AQ8WUA7 517 aa12.36□□□□□ -0.43
CLIP1-210ENST00000538120 COA1Q9GZY4 146 aa12.36□□□□□ -0.43
CLIP1-210ENST00000538120 RGS17Q9UGC6 210 aaPredicted RBP12.36□□□□□ -0.43
CLIP1-210ENST00000538120 SAP30BPQ9UHR5 308 aaKnown RBP12.36□□□□□ -0.43
CLIP1-210ENST00000538120 PARP3Q9Y6F1 533 aa12.36□□□□□ -0.43
CLIP1-210ENST00000538120 hCG_1642624A0A1W2PR95 340 aa12.35□□□□□ -0.43
CLIP1-210ENST00000538120 CTAGE5O15320 804 aa12.35□□□□□ -0.43
CLIP1-210ENST00000538120 MARCKSP29966 332 aaPredicted RBP12.35□□□□□ -0.43
CLIP1-210ENST00000538120 GNL2Q13823 731 aaKnown RBP12.35□□□□□ -0.43
CLIP1-210ENST00000538120 CCDC186Q7Z3E2 898 aa12.35□□□□□ -0.43
CLIP1-210ENST00000538120 SRBD1Q8N5C6 995 aaKnown RBP12.35□□□□□ -0.43
CLIP1-210ENST00000538120 ANKS1AQ92625 1134 aa12.35□□□□□ -0.43
CLIP1-210ENST00000538120 NOL10Q9BSC4 688 aaKnown RBP12.35□□□□□ -0.43
CLIP1-210ENST00000538120 FOXP1Q9H334 677 aaPredicted RBP12.35□□□□□ -0.43
CLIP1-210ENST00000538120 V9GY48 417 aaPredicted RBP12.35□□□□□ -0.43
CLIP1-210ENST00000538120 PPP6R2O75170 966 aa12.35□□□□□ -0.43
CLIP1-210ENST00000538120 COL11A2P13942 1736 aaPredicted RBP12.35□□□□□ -0.43
CLIP1-210ENST00000538120 CMA1P23946 247 aa12.35□□□□□ -0.43
CLIP1-210ENST00000538120 ALDH1B1P30837 517 aa12.35□□□□□ -0.43
CLIP1-210ENST00000538120 NR5A1Q13285 461 aa12.35□□□□□ -0.43
CLIP1-210ENST00000538120 TEX11Q8IYF3 940 aa12.35□□□□□ -0.43
CLIP1-210ENST00000538120 CERS5Q8N5B7 392 aa12.35□□□□□ -0.43
CLIP1-210ENST00000538120 SLC44A5Q8NCS7 719 aa12.35□□□□□ -0.43
CLIP1-210ENST00000538120 MASTLQ96GX5 879 aa12.35□□□□□ -0.43
CLIP1-210ENST00000538120 L3MBTL3Q96JM7 780 aaPredicted RBP12.35□□□□□ -0.43
CLIP1-210ENST00000538120 TNS1Q9HBL0 1735 aaKnown RBP12.35□□□□□ -0.43
CLIP1-210ENST00000538120 CBX8Q9HC52 389 aa12.35□□□□□ -0.43
CLIP1-210ENST00000538120 CNTNAP5Q8WYK1 1306 aa12.34□□□□□ -0.43
CLIP1-210ENST00000538120 KINO60870 393 aaKnown RBP12.34□□□□□ -0.43
CLIP1-210ENST00000538120 USP17L3A6NCW0 530 aa12.34□□□□□ -0.43
CLIP1-210ENST00000538120 USP17L4A6NCW7 530 aa12.34□□□□□ -0.43
CLIP1-210ENST00000538120 NT5C2P49902 561 aa12.34□□□□□ -0.43
CLIP1-210ENST00000538120 DMTNQ08495 405 aa12.34□□□□□ -0.43
CLIP1-210ENST00000538120 SAFBQ15424 915 aaKnown RBP eCLIP12.34□□□□□ -0.43
CLIP1-210ENST00000538120 SHC4Q6S5L8 630 aa12.34□□□□□ -0.43
CLIP1-210ENST00000538120 USP17L1Q7RTZ2 530 aa12.34□□□□□ -0.43
CLIP1-210ENST00000538120 DGKHQ86XP1 1220 aa12.34□□□□□ -0.43
CLIP1-210ENST00000538120 PDCL2Q8N4E4 241 aa12.34□□□□□ -0.43
CLIP1-210ENST00000538120 PHF20Q9BVI0 1012 aa12.34□□□□□ -0.43
CLIP1-210ENST00000538120 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.34□□□□□ -0.43
CLIP1-210ENST00000538120 VPS54Q9P1Q0 977 aa12.34□□□□□ -0.43
CLIP1-210ENST00000538120 DAGLAQ9Y4D2 1042 aa12.34□□□□□ -0.43
CLIP1-210ENST00000538120 FLT1P17948 1338 aa12.33□□□□□ -0.44
CLIP1-210ENST00000538120 RASA1P20936 1047 aa12.33□□□□□ -0.44
CLIP1-210ENST00000538120 NPY5RQ15761 445 aa12.33□□□□□ -0.44
CLIP1-210ENST00000538120 DOK7Q18PE1 504 aa12.33□□□□□ -0.44
CLIP1-210ENST00000538120 DPP8Q6V1X1 898 aaPredicted RBP12.33□□□□□ -0.44
CLIP1-210ENST00000538120 C16orf45Q96MC5 204 aaPredicted RBP12.33□□□□□ -0.44
CLIP1-210ENST00000538120 MXD3Q9BW11 206 aa12.33□□□□□ -0.44
CLIP1-210ENST00000538120 ZC3H12CQ9C0D7 883 aaKnown RBP12.33□□□□□ -0.44
CLIP1-210ENST00000538120 DNAJC25Q9H1X3 360 aa12.33□□□□□ -0.44
CLIP1-210ENST00000538120 MKNK2Q9HBH9 465 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms