RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 COG2Q14746 738 aa16.74■□□□□ 0.27
SYNE1-235ENST00000537033 CCL14Q16627 93 aa16.74■□□□□ 0.27
SYNE1-235ENST00000537033 SLFNL1Q499Z3 407 aa16.74■□□□□ 0.27
SYNE1-235ENST00000537033 C12orf60Q5U649 245 aa16.74■□□□□ 0.27
SYNE1-235ENST00000537033 MFSD14CQ5VZR4 134 aa16.74■□□□□ 0.27
SYNE1-235ENST00000537033 C11orf49Q9H6J7 331 aa16.74■□□□□ 0.27
SYNE1-235ENST00000537033 BTBD7Q9P203 1132 aa16.74■□□□□ 0.27
SYNE1-235ENST00000537033 RBM27Q9P2N5 1060 aaKnown RBP16.74■□□□□ 0.27
SYNE1-235ENST00000537033 OGDHLQ9ULD0 1010 aa16.74■□□□□ 0.27
SYNE1-235ENST00000537033 FRMPD3Q5JV73 1810 aa16.74■□□□□ 0.27
SYNE1-235ENST00000537033 ZNF236Q9UL36 1845 aa16.73■□□□□ 0.27
SYNE1-235ENST00000537033 A0A1W2PRG0 241 aa16.73■□□□□ 0.27
SYNE1-235ENST00000537033 USP17L12C9JPN9 530 aa16.73■□□□□ 0.27
SYNE1-235ENST00000537033 USP17L21D6R901 530 aa16.73■□□□□ 0.27
SYNE1-235ENST00000537033 AKR1B1P15121 316 aa16.73■□□□□ 0.27
SYNE1-235ENST00000537033 PTPREP23469 700 aa16.73■□□□□ 0.27
SYNE1-235ENST00000537033 CDK8P49336 464 aa16.73■□□□□ 0.27
SYNE1-235ENST00000537033 MB21D1Q8N884 522 aa16.73■□□□□ 0.27
SYNE1-235ENST00000537033 TRIOBPQ9H2D6 2365 aa16.73■□□□□ 0.27
SYNE1-235ENST00000537033 CYP2D7A0A087X1C5 515 aa16.72■□□□□ 0.27
SYNE1-235ENST00000537033 FLOT1O75955 427 aa16.72■□□□□ 0.27
SYNE1-235ENST00000537033 ATP2B2Q01814 1243 aa16.72■□□□□ 0.27
SYNE1-235ENST00000537033 GRB14Q14449 540 aa16.72■□□□□ 0.27
SYNE1-235ENST00000537033 C16orf86Q6ZW13 317 aa16.72■□□□□ 0.27
SYNE1-235ENST00000537033 C7orf61Q8IZ16 206 aa16.72■□□□□ 0.27
SYNE1-235ENST00000537033 ARPP21Q9UBL0 812 aaPredicted RBP16.72■□□□□ 0.27
SYNE1-235ENST00000537033 TMX2Q9Y320 296 aa16.72■□□□□ 0.27
SYNE1-235ENST00000537033 RLFQ13129 1914 aa16.72■□□□□ 0.27
SYNE1-235ENST00000537033 PARP14Q460N5 1801 aa16.71■□□□□ 0.27
SYNE1-235ENST00000537033 CHGBP05060 677 aa16.71■□□□□ 0.27
SYNE1-235ENST00000537033 CCND3P30281 292 aaPredicted RBP16.71■□□□□ 0.27
SYNE1-235ENST00000537033 CLEC10AQ8IUN9 316 aa16.71■□□□□ 0.27
SYNE1-235ENST00000537033 SPATC1LQ9H0A9 340 aa16.71■□□□□ 0.27
SYNE1-235ENST00000537033 PUS7LQ9H0K6 701 aaKnown RBP16.71■□□□□ 0.27
SYNE1-235ENST00000537033 DCTPP1Q9H773 170 aa16.71■□□□□ 0.27
SYNE1-235ENST00000537033 VCPKMTQ9H867 229 aa16.71■□□□□ 0.27
SYNE1-235ENST00000537033 A0A1W2PPC1 479 aa16.7■□□□□ 0.26
SYNE1-235ENST00000537033 WDR46O15213 610 aaKnown RBP16.7■□□□□ 0.26
SYNE1-235ENST00000537033 STRNO43815 780 aa16.7■□□□□ 0.26
SYNE1-235ENST00000537033 HOXC6P09630 235 aa16.7■□□□□ 0.26
SYNE1-235ENST00000537033 PLS1Q14651 629 aa16.7■□□□□ 0.26
SYNE1-235ENST00000537033 LRRFIP1Q32MZ4 808 aaKnown RBP16.7■□□□□ 0.26
SYNE1-235ENST00000537033 DPP9Q86TI2 863 aa16.7■□□□□ 0.26
SYNE1-235ENST00000537033 SPICE1Q8N0Z3 855 aa16.7■□□□□ 0.26
SYNE1-235ENST00000537033 KBTBD3Q8NAB2 608 aa16.7■□□□□ 0.26
SYNE1-235ENST00000537033 SHCBP1Q8NEM2 672 aa16.7■□□□□ 0.26
SYNE1-235ENST00000537033 MOV10L1Q9BXT6 1211 aaKnown RBP16.7■□□□□ 0.26
SYNE1-235ENST00000537033 KANSL2Q9H9L4 492 aa16.7■□□□□ 0.26
SYNE1-235ENST00000537033 GOPCQ9HD26 462 aa16.7■□□□□ 0.26
SYNE1-235ENST00000537033 SLC5A4Q9NY91 659 aa16.7■□□□□ 0.26
SYNE1-235ENST00000537033 MSCO60682 206 aa16.69■□□□□ 0.26
SYNE1-235ENST00000537033 ZFYP08048 801 aaPredicted RBP16.69■□□□□ 0.26
SYNE1-235ENST00000537033 CNGA1P29973 690 aa16.69■□□□□ 0.26
SYNE1-235ENST00000537033 MNX1P50219 401 aaPredicted RBP16.69■□□□□ 0.26
SYNE1-235ENST00000537033 CTR9Q6PD62 1173 aa16.69■□□□□ 0.26
SYNE1-235ENST00000537033 SAMD1Q6SPF0 538 aaPredicted RBP16.69■□□□□ 0.26
SYNE1-235ENST00000537033 PRO3102Q9H379 93 aa16.69■□□□□ 0.26
SYNE1-235ENST00000537033 MROH8Q9H579 483 aa16.69■□□□□ 0.26
SYNE1-235ENST00000537033 COL11A1P12107 1806 aaPredicted RBP16.68■□□□□ 0.26
SYNE1-235ENST00000537033 RAD21O60216 631 aa16.68■□□□□ 0.26
SYNE1-235ENST00000537033 EEF2P13639 858 aaKnown RBP16.68■□□□□ 0.26
SYNE1-235ENST00000537033 ERCC3P19447 782 aa16.68■□□□□ 0.26
SYNE1-235ENST00000537033 ADORA2AP29274 412 aa16.68■□□□□ 0.26
SYNE1-235ENST00000537033 DSG3P32926 999 aa16.68■□□□□ 0.26
SYNE1-235ENST00000537033 KIAA1755Q5JYT7 1200 aa16.68■□□□□ 0.26
SYNE1-235ENST00000537033 GIMAP6Q6P9H5 292 aa16.68■□□□□ 0.26
SYNE1-235ENST00000537033 NCAPG2Q86XI2 1143 aa16.68■□□□□ 0.26
SYNE1-235ENST00000537033 APPBP2Q92624 585 aa16.68■□□□□ 0.26
SYNE1-235ENST00000537033 STRBPQ96SI9 672 aaKnown RBP16.68■□□□□ 0.26
SYNE1-235ENST00000537033 FLRT1Q9NZU1 646 aa16.68■□□□□ 0.26
SYNE1-235ENST00000537033 GREB1LQ9C091 1923 aaPredicted RBP16.67■□□□□ 0.26
SYNE1-235ENST00000537033 ERC2O15083 957 aa16.67■□□□□ 0.26
SYNE1-235ENST00000537033 RNF113AO15541 343 aaKnown RBP16.67■□□□□ 0.26
SYNE1-235ENST00000537033 GNAT2P19087 354 aa16.67■□□□□ 0.26
SYNE1-235ENST00000537033 TSHZ3Q63HK5 1081 aa16.67■□□□□ 0.26
SYNE1-235ENST00000537033 OLFML2BQ68BL8 750 aa16.67■□□□□ 0.26
SYNE1-235ENST00000537033 LHX8Q68G74 356 aa16.67■□□□□ 0.26
SYNE1-235ENST00000537033 SIAH1Q8IUQ4 282 aa16.67■□□□□ 0.26
SYNE1-235ENST00000537033 NPLOC4Q8TAT6 608 aa16.67■□□□□ 0.26
SYNE1-235ENST00000537033 ATG4CQ96DT6 458 aa16.67■□□□□ 0.26
SYNE1-235ENST00000537033 MKNK2Q9HBH9 465 aa16.67■□□□□ 0.26
SYNE1-235ENST00000537033 ZNF287Q9HBT7 754 aa16.67■□□□□ 0.26
SYNE1-235ENST00000537033 STAP2Q9UGK3 403 aa16.67■□□□□ 0.26
SYNE1-235ENST00000537033 DDX20Q9UHI6 824 aaKnown RBP16.67■□□□□ 0.26
SYNE1-235ENST00000537033 ZMYND8Q9ULU4 1186 aaPredicted RBP16.67■□□□□ 0.26
SYNE1-235ENST00000537033 PFASO15067 1338 aa16.67■□□□□ 0.26
SYNE1-235ENST00000537033 MINDY4BA8MYZ0 360 aa16.66■□□□□ 0.26
SYNE1-235ENST00000537033 SMIM22K7EJ46 135 aa16.66■□□□□ 0.26
SYNE1-235ENST00000537033 CYP2C19P33261 490 aa16.66■□□□□ 0.26
SYNE1-235ENST00000537033 TDO2P48775 406 aa16.66■□□□□ 0.26
SYNE1-235ENST00000537033 SBK1Q52WX2 424 aa16.66■□□□□ 0.26
SYNE1-235ENST00000537033 ABRAQ8N0Z2 381 aa16.66■□□□□ 0.26
SYNE1-235ENST00000537033 TTC41PQ6P2S7 1318 aa16.66■□□□□ 0.26
SYNE1-235ENST00000537033 ROBO3Q96MS0 1386 aa16.65■□□□□ 0.26
SYNE1-235ENST00000537033 MYH4Q9Y623 1939 aa16.65■□□□□ 0.26
SYNE1-235ENST00000537033 GSG1L2A8MUP6 293 aa16.65■□□□□ 0.26
SYNE1-235ENST00000537033 GPAA1O43292 621 aa16.65■□□□□ 0.26
SYNE1-235ENST00000537033 SLC25A27O95847 323 aa16.65■□□□□ 0.26
SYNE1-235ENST00000537033 APPP05067 770 aa16.65■□□□□ 0.26
SYNE1-235ENST00000537033 COL6A1P12109 1028 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms