RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 ALG1LQ6GMV1 187 aa5.07□□□□□ -1.6
SKA3-207ENST00000536239 ANKS4BQ8N8V4 417 aa5.07□□□□□ -1.6
SKA3-207ENST00000536239 PPP1R13LQ8WUF5 828 aa5.07□□□□□ -1.6
SKA3-207ENST00000536239 DACT3Q96B18 629 aaPredicted RBP5.07□□□□□ -1.6
SKA3-207ENST00000536239 C12orf49Q9H741 205 aa5.07□□□□□ -1.6
SKA3-207ENST00000536239 BIN2Q9UBW5 565 aaPredicted RBP5.07□□□□□ -1.6
SKA3-207ENST00000536239 MBD1Q9UIS9 605 aaPredicted RBP5.07□□□□□ -1.6
SKA3-207ENST00000536239 PCDHB5Q9Y5E4 795 aa5.07□□□□□ -1.6
SKA3-207ENST00000536239 IRAK3Q9Y616 596 aa5.07□□□□□ -1.6
SKA3-207ENST00000536239 ADRB1P08588 477 aa5.06□□□□□ -1.6
SKA3-207ENST00000536239 MAPK1P28482 360 aa5.06□□□□□ -1.6
SKA3-207ENST00000536239 AFF3P51826 1226 aaKnown RBP5.06□□□□□ -1.6
SKA3-207ENST00000536239 RPS26P62854 115 aaKnown RBP5.06□□□□□ -1.6
SKA3-207ENST00000536239 SRSF3P84103 164 aaKnown RBP5.06□□□□□ -1.6
SKA3-207ENST00000536239 DUSP4Q13115 394 aa5.06□□□□□ -1.6
SKA3-207ENST00000536239 SEPT6Q14141 434 aa5.06□□□□□ -1.6
SKA3-207ENST00000536239 LINC01599Q8WXQ3 324 aa5.06□□□□□ -1.6
SKA3-207ENST00000536239 ACSF2Q96CM8 615 aaPredicted RBP5.06□□□□□ -1.6
SKA3-207ENST00000536239 SPG7Q9UQ90 795 aa5.06□□□□□ -1.6
SKA3-207ENST00000536239 TEKQ02763 1124 aa5.05□□□□□ -1.6
SKA3-207ENST00000536239 PDE4BQ07343 736 aa5.05□□□□□ -1.6
SKA3-207ENST00000536239 ERICH6BQ5W0A0 696 aa5.05□□□□□ -1.6
SKA3-207ENST00000536239 FEZF2Q8TBJ5 459 aa5.05□□□□□ -1.6
SKA3-207ENST00000536239 BORCS6Q96GS4 357 aa5.05□□□□□ -1.6
SKA3-207ENST00000536239 ADAM30Q9UKF2 790 aa5.05□□□□□ -1.6
SKA3-207ENST00000536239 WWC3Q9ULE0 1092 aa5.05□□□□□ -1.6
SKA3-207ENST00000536239 TTF2Q9UNY4 1162 aaKnown RBP5.05□□□□□ -1.6
SKA3-207ENST00000536239 SLC22A31A6NKX4 558 aa5.04□□□□□ -1.6
SKA3-207ENST00000536239 NOTOA8MTQ0 251 aa5.04□□□□□ -1.6
SKA3-207ENST00000536239 HRKO00198 91 aa5.04□□□□□ -1.6
SKA3-207ENST00000536239 LRRN2O75325 713 aa5.04□□□□□ -1.6
SKA3-207ENST00000536239 LMNB1P20700 586 aa5.04□□□□□ -1.6
SKA3-207ENST00000536239 FMR1Q06787 632 aaKnown RBP eCLIP5.04□□□□□ -1.6
SKA3-207ENST00000536239 ADGRF1Q5T601 910 aa5.04□□□□□ -1.6
SKA3-207ENST00000536239 NLRX1Q86UT6 975 aa5.04□□□□□ -1.6
SKA3-207ENST00000536239 SIRT2Q8IXJ6 389 aa5.04□□□□□ -1.6
SKA3-207ENST00000536239 ZDHHC14Q8IZN3 488 aa5.04□□□□□ -1.6
SKA3-207ENST00000536239 EPB41L4AQ9HCS5 686 aaPredicted RBP5.04□□□□□ -1.6
SKA3-207ENST00000536239 SIRT5Q9NXA8 310 aa5.04□□□□□ -1.6
SKA3-207ENST00000536239 ZNF281Q9Y2X9 895 aa5.04□□□□□ -1.6
SKA3-207ENST00000536239 RBM47A0AV96 593 aaKnown RBP5.03□□□□□ -1.6
SKA3-207ENST00000536239 N4BP3O15049 544 aa5.03□□□□□ -1.6
SKA3-207ENST00000536239 EPHB3P54753 998 aa5.03□□□□□ -1.6
SKA3-207ENST00000536239 CYB5D2Q8WUJ1 264 aa5.03□□□□□ -1.6
SKA3-207ENST00000536239 RNF141Q8WVD5 230 aa5.03□□□□□ -1.6
SKA3-207ENST00000536239 G6PC3Q9BUM1 346 aa5.03□□□□□ -1.6
SKA3-207ENST00000536239 TMPRSS5Q9H3S3 457 aa5.03□□□□□ -1.6
SKA3-207ENST00000536239 UPK3BL1B0FP48 263 aa5.02□□□□□ -1.61
SKA3-207ENST00000536239 UPK3BL2E5RIL1 263 aa5.02□□□□□ -1.61
SKA3-207ENST00000536239 EFEMP2O95967 443 aa5.02□□□□□ -1.61
SKA3-207ENST00000536239 VMACQ2NL98 169 aa5.02□□□□□ -1.61
SKA3-207ENST00000536239 AGMOQ6ZNB7 445 aa5.02□□□□□ -1.61
SKA3-207ENST00000536239 CNTD2Q9H8S5 307 aa5.02□□□□□ -1.61
SKA3-207ENST00000536239 SHISA3A0PJX4 238 aa5.01□□□□□ -1.61
SKA3-207ENST00000536239 IRS4O14654 1257 aaPredicted RBP5.01□□□□□ -1.61
SKA3-207ENST00000536239 VIPR1P32241 457 aa5.01□□□□□ -1.61
SKA3-207ENST00000536239 ATP2B2Q01814 1243 aa5.01□□□□□ -1.61
SKA3-207ENST00000536239 RPL6Q02878 288 aaKnown RBP5.01□□□□□ -1.61
SKA3-207ENST00000536239 CCDC85BQ15834 202 aaPredicted RBP5.01□□□□□ -1.61
SKA3-207ENST00000536239 ZXDCQ2QGD7 858 aaPredicted RBP5.01□□□□□ -1.61
SKA3-207ENST00000536239 TSNAXIP1Q2TAA8 658 aa5.01□□□□□ -1.61
SKA3-207ENST00000536239 SP8Q8IXZ3 490 aa5.01□□□□□ -1.61
SKA3-207ENST00000536239 TMEFF1Q8IYR6 380 aa5.01□□□□□ -1.61
SKA3-207ENST00000536239 FAM13CQ8NE31 585 aa5.01□□□□□ -1.61
SKA3-207ENST00000536239 TEPSINQ96N21 525 aa5.01□□□□□ -1.61
SKA3-207ENST00000536239 MIR1-1HGQ9H1L0 117 aa5.01□□□□□ -1.61
SKA3-207ENST00000536239 CRTAC1Q9NQ79 661 aa5.01□□□□□ -1.61
SKA3-207ENST00000536239 NRDCO43847 1150 aa5□□□□□ -1.61
SKA3-207ENST00000536239 YARSP54577 528 aaKnown RBP5□□□□□ -1.61
SKA3-207ENST00000536239 SPATS1Q496A3 300 aa5□□□□□ -1.61
SKA3-207ENST00000536239 CNKSR3Q6P9H4 555 aa5□□□□□ -1.61
SKA3-207ENST00000536239 SYT8Q8NBV8 401 aa5□□□□□ -1.61
SKA3-207ENST00000536239 FRMD6Q96NE9 622 aa5□□□□□ -1.61
SKA3-207ENST00000536239 LUC7LQ9NQ29 371 aaKnown RBP5□□□□□ -1.61
SKA3-207ENST00000536239 GNEQ9Y223 722 aaKnown RBP5□□□□□ -1.61
SKA3-207ENST00000536239 CORINQ9Y5Q5 1042 aa5□□□□□ -1.61
SKA3-207ENST00000536239 ZC3H12DA2A288 527 aaKnown RBP4.99□□□□□ -1.61
SKA3-207ENST00000536239 USP2O75604 605 aaPredicted RBP4.99□□□□□ -1.61
SKA3-207ENST00000536239 PLCG1P19174 1290 aa4.99□□□□□ -1.61
SKA3-207ENST00000536239 LIG3P49916 1009 aa4.99□□□□□ -1.61
SKA3-207ENST00000536239 YBX1P67809 324 aaKnown RBP4.99□□□□□ -1.61
SKA3-207ENST00000536239 EFEMP1Q12805 493 aa4.99□□□□□ -1.61
SKA3-207ENST00000536239 SLC14A2Q15849 920 aa4.99□□□□□ -1.61
SKA3-207ENST00000536239 CLEC16AQ2KHT3 1053 aa4.99□□□□□ -1.61
SKA3-207ENST00000536239 FAM129CQ86XR2 697 aa4.99□□□□□ -1.61
SKA3-207ENST00000536239 ZSCAN29Q8IWY8 852 aaPredicted RBP4.99□□□□□ -1.61
SKA3-207ENST00000536239 KREMEN1Q96MU8 473 aa4.99□□□□□ -1.61
SKA3-207ENST00000536239 KRTAP9-8Q9BYQ0 159 aa4.99□□□□□ -1.61
SKA3-207ENST00000536239 ADAM7Q9H2U9 754 aa4.99□□□□□ -1.61
SKA3-207ENST00000536239 PNLIPP16233 465 aa4.98□□□□□ -1.61
SKA3-207ENST00000536239 TFE3P19532 575 aaPredicted RBP4.98□□□□□ -1.61
SKA3-207ENST00000536239 RPL10P27635 214 aaKnown RBP4.98□□□□□ -1.61
SKA3-207ENST00000536239 KIR2DL1P43626 348 aaPredicted RBP4.98□□□□□ -1.61
SKA3-207ENST00000536239 KIR2DL2P43627 348 aaPredicted RBP4.98□□□□□ -1.61
SKA3-207ENST00000536239 TNNI2P48788 182 aa4.98□□□□□ -1.61
SKA3-207ENST00000536239 CDR1P51861 262 aa4.98□□□□□ -1.61
SKA3-207ENST00000536239 PLP2Q04941 152 aa4.98□□□□□ -1.61
SKA3-207ENST00000536239 PDE4CQ08493 712 aa4.98□□□□□ -1.61
SKA3-207ENST00000536239 MAP3K11Q16584 847 aa4.98□□□□□ -1.61
SKA3-207ENST00000536239 TMEM201Q5SNT2 666 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms