RNA–Protein interactions for RNA: ENST00000533123.5

SMPD1-208, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 2,211 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-208ENST00000533123 KANSL2Q9H9L4 492 aa21.53■■□□□ 1.04
SMPD1-208ENST00000533123 ZBTB21Q9ULJ3 1066 aa21.53■■□□□ 1.04
SMPD1-208ENST00000533123 TTLL1O95922 423 aa21.52■■□□□ 1.04
SMPD1-208ENST00000533123 INPP5BP32019 993 aa21.52■■□□□ 1.04
SMPD1-208ENST00000533123 PNMA1Q8ND90 353 aa21.52■■□□□ 1.04
SMPD1-208ENST00000533123 CHMP4CQ96CF2 233 aa21.52■■□□□ 1.04
SMPD1-208ENST00000533123 PDCP20941 246 aa21.52■■□□□ 1.04
SMPD1-208ENST00000533123 PTMSP20962 102 aa21.52■■□□□ 1.04
SMPD1-208ENST00000533123 METAP2P50579 478 aaKnown RBP eCLIP21.52■■□□□ 1.04
SMPD1-208ENST00000533123 TROAPQ12815 778 aa21.52■■□□□ 1.04
SMPD1-208ENST00000533123 GDPD2Q9HCC8 539 aa21.52■■□□□ 1.04
SMPD1-208ENST00000533123 MTMR7Q9Y216 660 aa21.52■■□□□ 1.04
SMPD1-208ENST00000533123 TCHHQ07283 1943 aa21.52■■□□□ 1.03
SMPD1-208ENST00000533123 EEF2P13639 858 aaKnown RBP21.51■■□□□ 1.03
SMPD1-208ENST00000533123 SIAH1Q8IUQ4 282 aa21.51■■□□□ 1.03
SMPD1-208ENST00000533123 LRRC47Q8N1G4 583 aaKnown RBP21.51■■□□□ 1.03
SMPD1-208ENST00000533123 WRNIP1Q96S55 665 aa21.51■■□□□ 1.03
SMPD1-208ENST00000533123 TOP1P11387 765 aaKnown RBP21.51■■□□□ 1.03
SMPD1-208ENST00000533123 ICA1Q05084 483 aa21.51■■□□□ 1.03
SMPD1-208ENST00000533123 FERMT3Q86UX7 667 aa21.51■■□□□ 1.03
SMPD1-208ENST00000533123 LDHDQ86WU2 507 aa21.51■■□□□ 1.03
SMPD1-208ENST00000533123 KLRG1Q96E93 195 aa21.51■■□□□ 1.03
SMPD1-208ENST00000533123 GOLGA8AA7E2F4 631 aa21.5■■□□□ 1.03
SMPD1-208ENST00000533123 CDC27P30260 824 aa21.5■■□□□ 1.03
SMPD1-208ENST00000533123 ADD1P35611 737 aaKnown RBP21.5■■□□□ 1.03
SMPD1-208ENST00000533123 ZKSCAN4Q969J2 545 aaPredicted RBP21.5■■□□□ 1.03
SMPD1-208ENST00000533123 ZNF112Q9UJU3 913 aa21.5■■□□□ 1.03
SMPD1-208ENST00000533123 TRAF5O00463 557 aa21.49■■□□□ 1.03
SMPD1-208ENST00000533123 CTNND1O60716 968 aaKnown RBP21.49■■□□□ 1.03
SMPD1-208ENST00000533123 USP2O75604 605 aaPredicted RBP21.49■■□□□ 1.03
SMPD1-208ENST00000533123 ASNSP08243 561 aa21.49■■□□□ 1.03
SMPD1-208ENST00000533123 FOSBP53539 338 aa21.49■■□□□ 1.03
SMPD1-208ENST00000533123 FMR1Q06787 632 aaKnown RBP eCLIP21.49■■□□□ 1.03
SMPD1-208ENST00000533123 CCDC84Q86UT8 332 aaPredicted RBP21.49■■□□□ 1.03
SMPD1-208ENST00000533123 FAM184AQ8NB25 1140 aa21.49■■□□□ 1.03
SMPD1-208ENST00000533123 FANCBQ8NB91 859 aa21.49■■□□□ 1.03
SMPD1-208ENST00000533123 FAM217BQ9NTX9 383 aaPredicted RBP21.49■■□□□ 1.03
SMPD1-208ENST00000533123 CNPY2Q9Y2B0 182 aa21.49■■□□□ 1.03
SMPD1-208ENST00000533123 DDX49Q9Y6V7 483 aaKnown RBP21.49■■□□□ 1.03
SMPD1-208ENST00000533123 DDAH1O94760 285 aa21.48■■□□□ 1.03
SMPD1-208ENST00000533123 SKOR2Q2VWA4 1001 aaPredicted RBP21.48■■□□□ 1.03
SMPD1-208ENST00000533123 RASGRP2Q7LDG7 609 aa21.48■■□□□ 1.03
SMPD1-208ENST00000533123 NYAP2Q9P242 653 aa21.48■■□□□ 1.03
SMPD1-208ENST00000533123 MYH4Q9Y623 1939 aa21.48■■□□□ 1.03
SMPD1-208ENST00000533123 PPP1R12BO60237 982 aaPredicted RBP21.48■■□□□ 1.03
SMPD1-208ENST00000533123 NF2P35240 595 aa21.48■■□□□ 1.03
SMPD1-208ENST00000533123 RTN1Q16799 776 aa21.48■■□□□ 1.03
SMPD1-208ENST00000533123 HMGN5P82970 282 aaKnown RBP21.47■■□□□ 1.03
SMPD1-208ENST00000533123 PPP4R3BQ5MIZ7 849 aa21.47■■□□□ 1.03
SMPD1-208ENST00000533123 ATAD5Q96QE3 1844 aa21.47■■□□□ 1.03
SMPD1-208ENST00000533123 A0A1W2PRG0 241 aa21.47■■□□□ 1.03
SMPD1-208ENST00000533123 CPLX1O14810 134 aa21.47■■□□□ 1.03
SMPD1-208ENST00000533123 CALM1P0DP23 149 aa21.47■■□□□ 1.03
SMPD1-208ENST00000533123 CALM2P0DP24 149 aa21.47■■□□□ 1.03
SMPD1-208ENST00000533123 CALM3P0DP25 149 aa21.47■■□□□ 1.03
SMPD1-208ENST00000533123 FDPSP14324 419 aaKnown RBP21.47■■□□□ 1.03
SMPD1-208ENST00000533123 RCAN1P53805 252 aa21.47■■□□□ 1.03
SMPD1-208ENST00000533123 CMTR1Q8N1G2 835 aaKnown RBP21.47■■□□□ 1.03
SMPD1-208ENST00000533123 MKL1Q969V6 931 aa21.47■■□□□ 1.03
SMPD1-208ENST00000533123 ECE1P42892 770 aa21.46■■□□□ 1.03
SMPD1-208ENST00000533123 DNM1Q05193 864 aaKnown RBP21.46■■□□□ 1.03
SMPD1-208ENST00000533123 FAM173BQ6P4H8 233 aa21.46■■□□□ 1.03
SMPD1-208ENST00000533123 MOB2Q70IA6 237 aa21.46■■□□□ 1.03
SMPD1-208ENST00000533123 SCYL3Q8IZE3 742 aa21.46■■□□□ 1.03
SMPD1-208ENST00000533123 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.46■■□□□ 1.03
SMPD1-208ENST00000533123 GPT2Q8TD30 523 aa21.46■■□□□ 1.03
SMPD1-208ENST00000533123 ACER1Q8TDN7 264 aa21.46■■□□□ 1.03
SMPD1-208ENST00000533123 GPBP1L1Q9HC44 474 aaPredicted RBP21.46■■□□□ 1.03
SMPD1-208ENST00000533123 RAD21O60216 631 aa21.45■■□□□ 1.03
SMPD1-208ENST00000533123 DHX16O60231 1041 aaKnown RBP21.45■■□□□ 1.03
SMPD1-208ENST00000533123 NCLP19338 710 aaKnown RBP21.45■■□□□ 1.03
SMPD1-208ENST00000533123 KLHL40Q2TBA0 621 aa21.45■■□□□ 1.03
SMPD1-208ENST00000533123 CTCFLQ8NI51 663 aaPredicted RBP21.45■■□□□ 1.03
SMPD1-208ENST00000533123 ZNF408Q9H9D4 720 aa21.45■■□□□ 1.03
SMPD1-208ENST00000533123 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.45■■□□□ 1.03
SMPD1-208ENST00000533123 ATP6V1DQ9Y5K8 247 aa21.45■■□□□ 1.03
SMPD1-208ENST00000533123 PDIA4P13667 645 aaKnown RBP21.45■■□□□ 1.02
SMPD1-208ENST00000533123 PRKCSHP14314 528 aaPredicted RBP21.45■■□□□ 1.02
SMPD1-208ENST00000533123 TTLL12Q14166 644 aaPredicted RBP21.45■■□□□ 1.02
SMPD1-208ENST00000533123 CCDC82Q8N4S0 544 aa21.45■■□□□ 1.02
SMPD1-208ENST00000533123 NID2Q14112 1375 aa21.45■■□□□ 1.02
SMPD1-208ENST00000533123 H3BQV1 296 aa21.44■■□□□ 1.02
SMPD1-208ENST00000533123 IFFO2Q5TF58 517 aa21.44■■□□□ 1.02
SMPD1-208ENST00000533123 USP17L2Q6R6M4 530 aa21.44■■□□□ 1.02
SMPD1-208ENST00000533123 ARHGEF10LQ9HCE6 1279 aa21.44■■□□□ 1.02
SMPD1-208ENST00000533123 USP17L5A8MUK1 530 aa21.44■■□□□ 1.02
SMPD1-208ENST00000533123 FIBPO43427 364 aa21.44■■□□□ 1.02
SMPD1-208ENST00000533123 GOLGA8HP0CJ92 632 aa21.44■■□□□ 1.02
SMPD1-208ENST00000533123 MAP3K9P80192 1104 aa21.44■■□□□ 1.02
SMPD1-208ENST00000533123 NTRK3Q16288 839 aa21.44■■□□□ 1.02
SMPD1-208ENST00000533123 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.44■■□□□ 1.02
SMPD1-208ENST00000533123 STAG2Q8N3U4 1231 aa21.44■■□□□ 1.02
SMPD1-208ENST00000533123 PICK1Q9NRD5 415 aa21.44■■□□□ 1.02
SMPD1-208ENST00000533123 CCDC196A0A1B0GTZ2 297 aa21.43■■□□□ 1.02
SMPD1-208ENST00000533123 PLEKHA8P1O95397 391 aa21.43■■□□□ 1.02
SMPD1-208ENST00000533123 PDHBP11177 359 aa21.43■■□□□ 1.02
SMPD1-208ENST00000533123 IREB2P48200 963 aaKnown RBP21.43■■□□□ 1.02
SMPD1-208ENST00000533123 PHKBQ93100 1093 aa21.43■■□□□ 1.02
SMPD1-208ENST00000533123 GINM1Q9NU53 330 aa21.43■■□□□ 1.02
SMPD1-208ENST00000533123 MAD2L2Q9UI95 211 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms