RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 PLIN4Q96Q06 1357 aa23.54■■□□□ 1.36
CPSF1-209ENST00000532725 RANBP6O60518 1105 aaKnown RBP23.54■■□□□ 1.36
CPSF1-209ENST00000532725 PCP11498 1178 aaKnown RBP23.54■■□□□ 1.36
CPSF1-209ENST00000532725 CTGFP29279 349 aa23.54■■□□□ 1.36
CPSF1-209ENST00000532725 HERVK_113P62684 666 aa23.54■■□□□ 1.36
CPSF1-209ENST00000532725 PKN2Q16513 984 aaKnown RBP23.54■■□□□ 1.36
CPSF1-209ENST00000532725 MFSD6Q6ZSS7 791 aa23.54■■□□□ 1.36
CPSF1-209ENST00000532725 TBC1D10CQ8IV04 446 aa23.54■■□□□ 1.36
CPSF1-209ENST00000532725 ANKRD13CQ8N6S4 541 aa23.54■■□□□ 1.36
CPSF1-209ENST00000532725 STAG1Q8WVM7 1258 aa23.54■■□□□ 1.36
CPSF1-209ENST00000532725 ARHGAP39Q9C0H5 1083 aa23.54■■□□□ 1.36
CPSF1-209ENST00000532725 RPAP3Q9H6T3 665 aaPredicted RBP23.54■■□□□ 1.36
CPSF1-209ENST00000532725 EFCC1Q9HA90 598 aa23.54■■□□□ 1.36
CPSF1-209ENST00000532725 IL17RBQ9NRM6 502 aa23.54■■□□□ 1.36
CPSF1-209ENST00000532725 TRIM17Q9Y577 477 aa23.54■■□□□ 1.36
CPSF1-209ENST00000532725 TSPY2A6NKD2 308 aa23.53■■□□□ 1.36
CPSF1-209ENST00000532725 KIF22Q14807 665 aa23.53■■□□□ 1.36
CPSF1-209ENST00000532725 SPICE1Q8N0Z3 855 aa23.53■■□□□ 1.36
CPSF1-209ENST00000532725 RBPJLQ9UBG7 517 aa23.53■■□□□ 1.36
CPSF1-209ENST00000532725 TTLL1O95922 423 aa23.52■■□□□ 1.36
CPSF1-209ENST00000532725 ARHGEF6Q15052 776 aa23.52■■□□□ 1.36
CPSF1-209ENST00000532725 IMMTQ16891 758 aaKnown RBP23.52■■□□□ 1.36
CPSF1-209ENST00000532725 FAM110CQ1W6H9 321 aa23.52■■□□□ 1.36
CPSF1-209ENST00000532725 NKX2-3Q8TAU0 364 aa23.52■■□□□ 1.36
CPSF1-209ENST00000532725 NMT2O60551 498 aa23.51■■□□□ 1.35
CPSF1-209ENST00000532725 PSMC4P43686 418 aa23.51■■□□□ 1.35
CPSF1-209ENST00000532725 NOVP48745 357 aa23.51■■□□□ 1.35
CPSF1-209ENST00000532725 RRP12Q5JTH9 1297 aaKnown RBP23.51■■□□□ 1.35
CPSF1-209ENST00000532725 MAP4K1Q92918 833 aa23.51■■□□□ 1.35
CPSF1-209ENST00000532725 ESYT1Q9BSJ8 1104 aa23.51■■□□□ 1.35
CPSF1-209ENST00000532725 RNF41Q9H4P4 317 aaPredicted RBP23.51■■□□□ 1.35
CPSF1-209ENST00000532725 GOPCQ9HD26 462 aa23.51■■□□□ 1.35
CPSF1-209ENST00000532725 TXNRD2Q9NNW7 524 aa23.51■■□□□ 1.35
CPSF1-209ENST00000532725 TOMM22Q9NS69 142 aa23.51■■□□□ 1.35
CPSF1-209ENST00000532725 MORF4L1Q9UBU8 362 aa23.51■■□□□ 1.35
CPSF1-209ENST00000532725 SYNPO2Q9UMS6 1093 aa23.51■■□□□ 1.35
CPSF1-209ENST00000532725 F5H6K3 240 aa23.5■■□□□ 1.35
CPSF1-209ENST00000532725 WDR46O15213 610 aaKnown RBP23.5■■□□□ 1.35
CPSF1-209ENST00000532725 KLRC3Q07444 240 aa23.5■■□□□ 1.35
CPSF1-209ENST00000532725 COG2Q14746 738 aa23.5■■□□□ 1.35
CPSF1-209ENST00000532725 LBX2Q6XYB7 198 aa23.5■■□□□ 1.35
CPSF1-209ENST00000532725 TRIM47Q96LD4 638 aa23.5■■□□□ 1.35
CPSF1-209ENST00000532725 TCP11L1Q9NUJ3 509 aa23.5■■□□□ 1.35
CPSF1-209ENST00000532725 HOXC10Q9NYD6 342 aa23.5■■□□□ 1.35
CPSF1-209ENST00000532725 PEX10O60683 326 aa23.49■■□□□ 1.35
CPSF1-209ENST00000532725 ECM2O94769 699 aaPredicted RBP23.49■■□□□ 1.35
CPSF1-209ENST00000532725 GNRH1P01148 92 aa23.49■■□□□ 1.35
CPSF1-209ENST00000532725 Q3C1V9 767 aa23.49■■□□□ 1.35
CPSF1-209ENST00000532725 FBXO46Q6PJ61 603 aaPredicted RBP23.49■■□□□ 1.35
CPSF1-209ENST00000532725 GTF3C2Q8WUA4 911 aaPredicted RBP23.49■■□□□ 1.35
CPSF1-209ENST00000532725 PTPN22Q9Y2R2 807 aa23.49■■□□□ 1.35
CPSF1-209ENST00000532725 U3KPZ7 1027 aaPredicted RBP23.49■■□□□ 1.35
CPSF1-209ENST00000532725 PPP4R3BQ5MIZ7 849 aa23.48■■□□□ 1.35
CPSF1-209ENST00000532725 GPRC5AQ8NFJ5 357 aa23.48■■□□□ 1.35
CPSF1-209ENST00000532725 ABHD8Q96I13 439 aa23.48■■□□□ 1.35
CPSF1-209ENST00000532725 TANGO6Q9C0B7 1094 aa23.48■■□□□ 1.35
CPSF1-209ENST00000532725 LSG1Q9H089 658 aaKnown RBP23.48■■□□□ 1.35
CPSF1-209ENST00000532725 RABGAP1Q9Y3P9 1069 aa23.48■■□□□ 1.35
CPSF1-209ENST00000532725 NEDD4P46934 1319 aa23.48■■□□□ 1.35
CPSF1-209ENST00000532725 SPDYE16A6NNV3 312 aaPredicted RBP23.47■■□□□ 1.35
CPSF1-209ENST00000532725 CNMDO75829 334 aa23.47■■□□□ 1.35
CPSF1-209ENST00000532725 FMNL1O95466 1100 aaPredicted RBP23.47■■□□□ 1.35
CPSF1-209ENST00000532725 NDUFB10O96000 172 aa23.47■■□□□ 1.35
CPSF1-209ENST00000532725 FCGRTP55899 365 aa23.47■■□□□ 1.35
CPSF1-209ENST00000532725 GMCL1P1Q8NEA9 526 aa23.47■■□□□ 1.35
CPSF1-209ENST00000532725 RAD21O60216 631 aa23.46■■□□□ 1.35
CPSF1-209ENST00000532725 CDC45O75419 566 aa23.46■■□□□ 1.35
CPSF1-209ENST00000532725 CYP21A2P08686 494 aa23.46■■□□□ 1.35
CPSF1-209ENST00000532725 DSG3P32926 999 aa23.46■■□□□ 1.35
CPSF1-209ENST00000532725 NT5C2P49902 561 aa23.46■■□□□ 1.35
CPSF1-209ENST00000532725 FAM83BQ5T0W9 1011 aa23.46■■□□□ 1.35
CPSF1-209ENST00000532725 KIAA1211Q6ZU35 1233 aa23.46■■□□□ 1.35
CPSF1-209ENST00000532725 LRRC47Q8N1G4 583 aaKnown RBP23.46■■□□□ 1.35
CPSF1-209ENST00000532725 ESR2Q92731 530 aa23.46■■□□□ 1.35
CPSF1-209ENST00000532725 STX8Q9UNK0 236 aa23.46■■□□□ 1.35
CPSF1-209ENST00000532725 FLOT1O75955 427 aa23.45■■□□□ 1.34
CPSF1-209ENST00000532725 HOXD10P28358 340 aa23.45■■□□□ 1.34
CPSF1-209ENST00000532725 ERVK-9P63128 1117 aa23.45■■□□□ 1.34
CPSF1-209ENST00000532725 ERVK-24P63145 666 aa23.45■■□□□ 1.34
CPSF1-209ENST00000532725 NUP88Q99567 741 aaPredicted RBP23.45■■□□□ 1.34
CPSF1-209ENST00000532725 BTBD7Q9P203 1132 aa23.45■■□□□ 1.34
CPSF1-209ENST00000532725 SRRDQ9UH36 339 aa23.45■■□□□ 1.34
CPSF1-209ENST00000532725 ADAMTS5Q9UNA0 930 aa23.45■■□□□ 1.34
CPSF1-209ENST00000532725 KDM4AO75164 1064 aa23.44■■□□□ 1.34
CPSF1-209ENST00000532725 PRMT2P55345 433 aa23.44■■□□□ 1.34
CPSF1-209ENST00000532725 SLFN13Q68D06 897 aa23.44■■□□□ 1.34
CPSF1-209ENST00000532725 TTC14Q96N46 770 aa23.44■■□□□ 1.34
CPSF1-209ENST00000532725 PAGR1Q9BTK6 254 aa23.44■■□□□ 1.34
CPSF1-209ENST00000532725 FBXO28Q9NVF7 368 aa23.44■■□□□ 1.34
CPSF1-209ENST00000532725 ZSWIM5Q9P217 1185 aa23.44■■□□□ 1.34
CPSF1-209ENST00000532725 HPS5Q9UPZ3 1129 aa23.44■■□□□ 1.34
CPSF1-209ENST00000532725 RBM8AQ9Y5S9 174 aaKnown RBP23.44■■□□□ 1.34
CPSF1-209ENST00000532725 MYPNQ86TC9 1320 aa23.43■■□□□ 1.34
CPSF1-209ENST00000532725 B4E1Z4 1266 aa23.43■■□□□ 1.34
CPSF1-209ENST00000532725 RCSD1Q6JBY9 416 aa23.43■■□□□ 1.34
CPSF1-209ENST00000532725 KRT23Q9C075 422 aa23.43■■□□□ 1.34
CPSF1-209ENST00000532725 CNNM2Q9H8M5 875 aa23.43■■□□□ 1.34
CPSF1-209ENST00000532725 TAF6LQ9Y6J9 622 aa23.43■■□□□ 1.34
CPSF1-209ENST00000532725 RLFQ13129 1914 aa23.43■■□□□ 1.34
CPSF1-209ENST00000532725 ZSWIM8A7E2V4 1837 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms