RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 A0A1W2PRG0 241 aa17.71■□□□□ 0.43
VPS28-215ENST00000531924 USP17L12C9JPN9 530 aa17.71■□□□□ 0.43
VPS28-215ENST00000531924 USP17L21D6R901 530 aa17.71■□□□□ 0.43
VPS28-215ENST00000531924 C12orf60Q5U649 245 aa17.71■□□□□ 0.43
VPS28-215ENST00000531924 SAMD1Q6SPF0 538 aaPredicted RBP17.71■□□□□ 0.43
VPS28-215ENST00000531924 C7orf61Q8IZ16 206 aa17.71■□□□□ 0.43
VPS28-215ENST00000531924 LPAR1Q92633 364 aa17.71■□□□□ 0.43
VPS28-215ENST00000531924 BTBD7Q9P203 1132 aa17.71■□□□□ 0.43
VPS28-215ENST00000531924 NAV1Q8NEY1 1877 aa17.71■□□□□ 0.43
VPS28-215ENST00000531924 CYP2D7A0A087X1C5 515 aa17.7■□□□□ 0.42
VPS28-215ENST00000531924 AKR1B1P15121 316 aa17.7■□□□□ 0.42
VPS28-215ENST00000531924 CDK8P49336 464 aa17.7■□□□□ 0.42
VPS28-215ENST00000531924 PLS1Q14651 629 aa17.7■□□□□ 0.42
VPS28-215ENST00000531924 DPP9Q86TI2 863 aa17.7■□□□□ 0.42
VPS28-215ENST00000531924 RAD21O60216 631 aa17.69■□□□□ 0.42
VPS28-215ENST00000531924 FLOT1O75955 427 aa17.69■□□□□ 0.42
VPS28-215ENST00000531924 CNGA1P29973 690 aa17.69■□□□□ 0.42
VPS28-215ENST00000531924 CCND3P30281 292 aaPredicted RBP17.69■□□□□ 0.42
VPS28-215ENST00000531924 SPICE1Q8N0Z3 855 aa17.69■□□□□ 0.42
VPS28-215ENST00000531924 MB21D1Q8N884 522 aa17.69■□□□□ 0.42
VPS28-215ENST00000531924 STRNO43815 780 aa17.68■□□□□ 0.42
VPS28-215ENST00000531924 GRB14Q14449 540 aa17.68■□□□□ 0.42
VPS28-215ENST00000531924 C16orf86Q6ZW13 317 aa17.68■□□□□ 0.42
VPS28-215ENST00000531924 MOV10L1Q9BXT6 1211 aaKnown RBP17.68■□□□□ 0.42
VPS28-215ENST00000531924 SPATC1LQ9H0A9 340 aa17.68■□□□□ 0.42
VPS28-215ENST00000531924 PUS7LQ9H0K6 701 aaKnown RBP17.68■□□□□ 0.42
VPS28-215ENST00000531924 KANSL2Q9H9L4 492 aa17.68■□□□□ 0.42
VPS28-215ENST00000531924 SLC5A4Q9NY91 659 aa17.68■□□□□ 0.42
VPS28-215ENST00000531924 ARPP21Q9UBL0 812 aaPredicted RBP17.68■□□□□ 0.42
VPS28-215ENST00000531924 STAP2Q9UGK3 403 aa17.68■□□□□ 0.42
VPS28-215ENST00000531924 TMX2Q9Y320 296 aa17.68■□□□□ 0.42
VPS28-215ENST00000531924 WDR46O15213 610 aaKnown RBP17.67■□□□□ 0.42
VPS28-215ENST00000531924 CHGBP05060 677 aa17.67■□□□□ 0.42
VPS28-215ENST00000531924 LRRFIP1Q32MZ4 808 aaKnown RBP17.67■□□□□ 0.42
VPS28-215ENST00000531924 CTR9Q6PD62 1173 aa17.67■□□□□ 0.42
VPS28-215ENST00000531924 NCAPG2Q86XI2 1143 aa17.67■□□□□ 0.42
VPS28-215ENST00000531924 CLEC10AQ8IUN9 316 aa17.67■□□□□ 0.42
VPS28-215ENST00000531924 DCTPP1Q9H773 170 aa17.67■□□□□ 0.42
VPS28-215ENST00000531924 VCPKMTQ9H867 229 aa17.67■□□□□ 0.42
VPS28-215ENST00000531924 MKNK2Q9HBH9 465 aa17.67■□□□□ 0.42
VPS28-215ENST00000531924 GOPCQ9HD26 462 aa17.67■□□□□ 0.42
VPS28-215ENST00000531924 ZMYND8Q9ULU4 1186 aaPredicted RBP17.67■□□□□ 0.42
VPS28-215ENST00000531924 DDX60LQ5H9U9 1706 aaKnown RBP17.67■□□□□ 0.42
VPS28-215ENST00000531924 TRIOBPQ9H2D6 2365 aa17.66■□□□□ 0.42
VPS28-215ENST00000531924 MSCO60682 206 aa17.66■□□□□ 0.42
VPS28-215ENST00000531924 HOXC6P09630 235 aa17.66■□□□□ 0.42
VPS28-215ENST00000531924 EEF2P13639 858 aaKnown RBP17.66■□□□□ 0.42
VPS28-215ENST00000531924 ERCC3P19447 782 aa17.66■□□□□ 0.42
VPS28-215ENST00000531924 DSG3P32926 999 aa17.66■□□□□ 0.42
VPS28-215ENST00000531924 KBTBD3Q8NAB2 608 aa17.66■□□□□ 0.42
VPS28-215ENST00000531924 SHCBP1Q8NEM2 672 aa17.66■□□□□ 0.42
VPS28-215ENST00000531924 MROH8Q9H579 483 aa17.66■□□□□ 0.42
VPS28-215ENST00000531924 PLXNB2O15031 1838 aa17.65■□□□□ 0.42
VPS28-215ENST00000531924 A0A1W2PPC1 479 aa17.65■□□□□ 0.42
VPS28-215ENST00000531924 MINDY4BA8MYZ0 360 aa17.65■□□□□ 0.42
VPS28-215ENST00000531924 APPP05067 770 aa17.65■□□□□ 0.42
VPS28-215ENST00000531924 ZFYP08048 801 aaPredicted RBP17.65■□□□□ 0.42
VPS28-215ENST00000531924 ADORA2AP29274 412 aa17.65■□□□□ 0.42
VPS28-215ENST00000531924 CYP2C19P33261 490 aa17.65■□□□□ 0.42
VPS28-215ENST00000531924 MNX1P50219 401 aaPredicted RBP17.65■□□□□ 0.42
VPS28-215ENST00000531924 LHX8Q68G74 356 aa17.65■□□□□ 0.42
VPS28-215ENST00000531924 SIAH1Q8IUQ4 282 aa17.65■□□□□ 0.42
VPS28-215ENST00000531924 STK11IPQ8N1F8 1099 aa17.65■□□□□ 0.42
VPS28-215ENST00000531924 ATG4CQ96DT6 458 aa17.65■□□□□ 0.42
VPS28-215ENST00000531924 STRBPQ96SI9 672 aaKnown RBP17.65■□□□□ 0.42
VPS28-215ENST00000531924 FLRT1Q9NZU1 646 aa17.65■□□□□ 0.42
VPS28-215ENST00000531924 ZBTB47Q9UFB7 747 aaPredicted RBP17.65■□□□□ 0.42
VPS28-215ENST00000531924 DDX20Q9UHI6 824 aaKnown RBP17.65■□□□□ 0.42
VPS28-215ENST00000531924 RNF113AO15541 343 aaKnown RBP17.64■□□□□ 0.41
VPS28-215ENST00000531924 KIAA1755Q5JYT7 1200 aa17.64■□□□□ 0.41
VPS28-215ENST00000531924 TSHZ3Q63HK5 1081 aa17.64■□□□□ 0.41
VPS28-215ENST00000531924 NPLOC4Q8TAT6 608 aa17.64■□□□□ 0.41
VPS28-215ENST00000531924 APPBP2Q92624 585 aa17.64■□□□□ 0.41
VPS28-215ENST00000531924 PRO3102Q9H379 93 aa17.64■□□□□ 0.41
VPS28-215ENST00000531924 ZNF287Q9HBT7 754 aa17.64■□□□□ 0.41
VPS28-215ENST00000531924 SMIM22K7EJ46 135 aa17.63■□□□□ 0.41
VPS28-215ENST00000531924 ERC2O15083 957 aa17.63■□□□□ 0.41
VPS28-215ENST00000531924 FCER1AP12319 257 aa17.63■□□□□ 0.41
VPS28-215ENST00000531924 SYN1P17600 705 aa17.63■□□□□ 0.41
VPS28-215ENST00000531924 GNAT2P19087 354 aa17.63■□□□□ 0.41
VPS28-215ENST00000531924 TDO2P48775 406 aa17.63■□□□□ 0.41
VPS28-215ENST00000531924 GIMAP6Q6P9H5 292 aa17.63■□□□□ 0.41
VPS28-215ENST00000531924 SLC25A27O95847 323 aa17.62■□□□□ 0.41
VPS28-215ENST00000531924 SBK1Q52WX2 424 aa17.62■□□□□ 0.41
VPS28-215ENST00000531924 OLFML2BQ68BL8 750 aa17.62■□□□□ 0.41
VPS28-215ENST00000531924 ABRAQ8N0Z2 381 aa17.62■□□□□ 0.41
VPS28-215ENST00000531924 SENP6Q9GZR1 1112 aaPredicted RBP17.62■□□□□ 0.41
VPS28-215ENST00000531924 PFASO15067 1338 aa17.62■□□□□ 0.41
VPS28-215ENST00000531924 GSG1L2A8MUP6 293 aa17.61■□□□□ 0.41
VPS28-215ENST00000531924 GPAA1O43292 621 aa17.61■□□□□ 0.41
VPS28-215ENST00000531924 MYCNP04198 464 aaPredicted RBP17.61■□□□□ 0.41
VPS28-215ENST00000531924 COL6A1P12109 1028 aa17.61■□□□□ 0.41
VPS28-215ENST00000531924 ZNF444Q8N0Y2 327 aaPredicted RBP17.61■□□□□ 0.41
VPS28-215ENST00000531924 ARRDC4Q8NCT1 418 aa17.61■□□□□ 0.41
VPS28-215ENST00000531924 OSBP2Q969R2 916 aa17.61■□□□□ 0.41
VPS28-215ENST00000531924 NACAP1Q9BZK3 213 aa17.61■□□□□ 0.41
VPS28-215ENST00000531924 CTDP1Q9Y5B0 961 aaPredicted RBP17.61■□□□□ 0.41
VPS28-215ENST00000531924 BMP8BP34820 402 aa17.6■□□□□ 0.41
VPS28-215ENST00000531924 KCTD2Q14681 263 aa17.6■□□□□ 0.41
VPS28-215ENST00000531924 TMEM132BQ14DG7 1078 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms