RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 ATE1O95260 518 aa4.75□□□□□ -1.65
CD44-229ENST00000528672 TP53P04637 393 aaPredicted RBP4.75□□□□□ -1.65
CD44-229ENST00000528672 EIF6P56537 245 aaKnown RBP4.75□□□□□ -1.65
CD44-229ENST00000528672 NBPF6Q5VWK0 638 aa4.75□□□□□ -1.65
CD44-229ENST00000528672 ARMCX6Q7L4S7 300 aa4.75□□□□□ -1.65
CD44-229ENST00000528672 TTC6Q86TZ1 520 aa4.75□□□□□ -1.65
CD44-229ENST00000528672 TOP6BLQ8N6T0 577 aa4.75□□□□□ -1.65
CD44-229ENST00000528672 ZNF507Q8TCN5 953 aa4.75□□□□□ -1.65
CD44-229ENST00000528672 MRFAP1L1Q96HT8 127 aa4.75□□□□□ -1.65
CD44-229ENST00000528672 COX4I2Q96KJ9 171 aa4.75□□□□□ -1.65
CD44-229ENST00000528672 NBPF4Q96M43 638 aa4.75□□□□□ -1.65
CD44-229ENST00000528672 TBX22Q9Y458 520 aa4.75□□□□□ -1.65
CD44-229ENST00000528672 SBNO2Q9Y2G9 1366 aa4.75□□□□□ -1.65
CD44-229ENST00000528672 IGF2BP3O00425 579 aaKnown RBP eCLIP4.74□□□□□ -1.65
CD44-229ENST00000528672 CLSTN1O94985 981 aa4.74□□□□□ -1.65
CD44-229ENST00000528672 MED26O95402 600 aa4.74□□□□□ -1.65
CD44-229ENST00000528672 NME1P15531 152 aaKnown RBP4.74□□□□□ -1.65
CD44-229ENST00000528672 ZNF165P49910 485 aa4.74□□□□□ -1.65
CD44-229ENST00000528672 GP2P55259 537 aaKnown RBP4.74□□□□□ -1.65
CD44-229ENST00000528672 SNW1Q13573 536 aaKnown RBP4.74□□□□□ -1.65
CD44-229ENST00000528672 EGFLAMQ63HQ2 1017 aa4.74□□□□□ -1.65
CD44-229ENST00000528672 ZNF746Q6NUN9 644 aaPredicted RBP4.74□□□□□ -1.65
CD44-229ENST00000528672 C6orf15Q6UXA7 325 aaPredicted RBP4.74□□□□□ -1.65
CD44-229ENST00000528672 UNC5AQ6ZN44 842 aa4.74□□□□□ -1.65
CD44-229ENST00000528672 C22orf34Q6ZV56 151 aa4.74□□□□□ -1.65
CD44-229ENST00000528672 VSIG10LQ86VR7 867 aa4.74□□□□□ -1.65
CD44-229ENST00000528672 MCATQ8IVS2 390 aaKnown RBP4.74□□□□□ -1.65
CD44-229ENST00000528672 FBXL6Q8N531 539 aa4.74□□□□□ -1.65
CD44-229ENST00000528672 FAM181AQ8N9Y4 354 aa4.74□□□□□ -1.65
CD44-229ENST00000528672 TMEM40Q8WWA1 233 aa4.74□□□□□ -1.65
CD44-229ENST00000528672 MISP3Q96FF7 219 aa4.74□□□□□ -1.65
CD44-229ENST00000528672 MIPEPQ99797 713 aa4.74□□□□□ -1.65
CD44-229ENST00000528672 BSDC1Q9NW68 430 aaPredicted RBP4.74□□□□□ -1.65
CD44-229ENST00000528672 ADAM30Q9UKF2 790 aa4.74□□□□□ -1.65
CD44-229ENST00000528672 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.74□□□□□ -1.65
CD44-229ENST00000528672 ROBO2Q9HCK4 1378 aa4.74□□□□□ -1.65
CD44-229ENST00000528672 CYP26A1O43174 497 aa4.73□□□□□ -1.65
CD44-229ENST00000528672 LRIG2O94898 1065 aa4.73□□□□□ -1.65
CD44-229ENST00000528672 PDE4BQ07343 736 aa4.73□□□□□ -1.65
CD44-229ENST00000528672 TMEM201Q5SNT2 666 aa4.73□□□□□ -1.65
CD44-229ENST00000528672 ZNF765Q7L2R6 523 aa4.73□□□□□ -1.65
CD44-229ENST00000528672 CDC37L1Q7L3B6 337 aa4.73□□□□□ -1.65
CD44-229ENST00000528672 NLRC3Q7RTR2 1065 aa4.73□□□□□ -1.65
CD44-229ENST00000528672 STK11IPQ8N1F8 1099 aa4.73□□□□□ -1.65
CD44-229ENST00000528672 REXO1Q8N1G1 1221 aaKnown RBP4.73□□□□□ -1.65
CD44-229ENST00000528672 DNAJB8Q8NHS0 232 aa4.73□□□□□ -1.65
CD44-229ENST00000528672 KLHL6Q8WZ60 621 aa4.73□□□□□ -1.65
CD44-229ENST00000528672 HEXIM2Q96MH2 286 aaKnown RBP4.73□□□□□ -1.65
CD44-229ENST00000528672 DUSP23Q9BVJ7 150 aa4.73□□□□□ -1.65
CD44-229ENST00000528672 CNNM2Q9H8M5 875 aa4.73□□□□□ -1.65
CD44-229ENST00000528672 STRIP2Q9ULQ0 834 aa4.73□□□□□ -1.65
CD44-229ENST00000528672 U2SURPO15042 1029 aaKnown RBP4.72□□□□□ -1.65
CD44-229ENST00000528672 GJB6O95452 261 aa4.72□□□□□ -1.65
CD44-229ENST00000528672 EOMESO95936 686 aa4.72□□□□□ -1.65
CD44-229ENST00000528672 FAM87AP0C7U9 286 aa4.72□□□□□ -1.65
CD44-229ENST00000528672 SERINC3Q13530 473 aa4.72□□□□□ -1.65
CD44-229ENST00000528672 COL9A2Q14055 689 aaPredicted RBP4.72□□□□□ -1.65
CD44-229ENST00000528672 DCAF15Q66K64 600 aa4.72□□□□□ -1.65
CD44-229ENST00000528672 FAM214BQ7L5A3 538 aa4.72□□□□□ -1.65
CD44-229ENST00000528672 HID1Q8IV36 788 aa4.72□□□□□ -1.65
CD44-229ENST00000528672 MRPL41Q8IXM3 137 aaKnown RBP4.72□□□□□ -1.65
CD44-229ENST00000528672 PHACTR4Q8IZ21 702 aa4.72□□□□□ -1.65
CD44-229ENST00000528672 NLGN1Q8N2Q7 840 aa4.72□□□□□ -1.65
CD44-229ENST00000528672 MFSD2AQ8NA29 543 aa4.72□□□□□ -1.65
CD44-229ENST00000528672 MKL1Q969V6 931 aa4.72□□□□□ -1.65
CD44-229ENST00000528672 FBXL18Q96ME1 805 aa4.72□□□□□ -1.65
CD44-229ENST00000528672 KRTAP4-9Q9BYQ8 210 aa4.72□□□□□ -1.65
CD44-229ENST00000528672 TRIM55Q9BYV6 548 aa4.72□□□□□ -1.65
CD44-229ENST00000528672 FOXQ1Q9C009 403 aa4.72□□□□□ -1.65
CD44-229ENST00000528672 GMIPQ9P107 970 aa4.72□□□□□ -1.65
CD44-229ENST00000528672 SIRPGQ9P1W8 387 aa4.72□□□□□ -1.65
CD44-229ENST00000528672 PRKAG3Q9UGI9 489 aa4.72□□□□□ -1.65
CD44-229ENST00000528672 GTF2IRD1Q9UHL9 959 aa4.72□□□□□ -1.65
CD44-229ENST00000528672 MAPK8IP1Q9UQF2 711 aa4.72□□□□□ -1.65
CD44-229ENST00000528672 TBX1O43435 398 aa4.71□□□□□ -1.66
CD44-229ENST00000528672 WNT11O96014 354 aa4.71□□□□□ -1.66
CD44-229ENST00000528672 CST3P01034 146 aaPredicted RBP4.71□□□□□ -1.66
CD44-229ENST00000528672 HSD3B2P26439 372 aa4.71□□□□□ -1.66
CD44-229ENST00000528672 AXDND1Q5T1B0 1012 aaPredicted RBP4.71□□□□□ -1.66
CD44-229ENST00000528672 SPATC1Q76KD6 591 aa4.71□□□□□ -1.66
CD44-229ENST00000528672 JAZF1Q86VZ6 243 aa4.71□□□□□ -1.66
CD44-229ENST00000528672 FGD4Q96M96 766 aa4.71□□□□□ -1.66
CD44-229ENST00000528672 SLC6A18Q96N87 628 aa4.71□□□□□ -1.66
CD44-229ENST00000528672 PRDM10Q9NQV6 1147 aa4.71□□□□□ -1.66
CD44-229ENST00000528672 SUSD2Q9UGT4 822 aa4.71□□□□□ -1.66
CD44-229ENST00000528672 R3HCC1Q9Y3T6 440 aaKnown RBP4.71□□□□□ -1.66
CD44-229ENST00000528672 MRPL42Q9Y6G3 142 aaKnown RBP4.71□□□□□ -1.66
CD44-229ENST00000528672 SHISA3A0PJX4 238 aa4.7□□□□□ -1.66
CD44-229ENST00000528672 MEIS3P2A8K0S8 358 aa4.7□□□□□ -1.66
CD44-229ENST00000528672 SHOXO15266 292 aa4.7□□□□□ -1.66
CD44-229ENST00000528672 DIAPH1O60610 1272 aaKnown RBP4.7□□□□□ -1.66
CD44-229ENST00000528672 CBX7O95931 251 aa4.7□□□□□ -1.66
CD44-229ENST00000528672 RAG1P15918 1043 aa4.7□□□□□ -1.66
CD44-229ENST00000528672 GUCY2CP25092 1073 aa4.7□□□□□ -1.66
CD44-229ENST00000528672 HOXA10P31260 410 aaPredicted RBP4.7□□□□□ -1.66
CD44-229ENST00000528672 CD96P40200 585 aa4.7□□□□□ -1.66
CD44-229ENST00000528672 RAB33AQ14088 237 aa4.7□□□□□ -1.66
CD44-229ENST00000528672 TCEAL1Q15170 157 aa4.7□□□□□ -1.66
CD44-229ENST00000528672 CDCP2Q5VXM1 449 aa4.7□□□□□ -1.66
CD44-229ENST00000528672 SLC6A19Q695T7 634 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms