RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 LBX2Q6XYB7 198 aa12.77□□□□□ -0.37
CD44-227ENST00000528086 CCDC17Q96LX7 622 aa12.77□□□□□ -0.37
CD44-227ENST00000528086 FEZ1Q99689 392 aa12.77□□□□□ -0.37
CD44-227ENST00000528086 NBPF3Q9H094 633 aa12.77□□□□□ -0.37
CD44-227ENST00000528086 IL25Q9H293 177 aa12.77□□□□□ -0.37
CD44-227ENST00000528086 ZNFX1Q9P2E3 1918 aaKnown RBP12.76□□□□□ -0.37
CD44-227ENST00000528086 TNPO2O14787 897 aaKnown RBP12.76□□□□□ -0.37
CD44-227ENST00000528086 GNAT2P19087 354 aa12.76□□□□□ -0.37
CD44-227ENST00000528086 USP14P54578 494 aa12.76□□□□□ -0.37
CD44-227ENST00000528086 ICA1Q05084 483 aa12.76□□□□□ -0.37
CD44-227ENST00000528086 NMIQ13287 307 aaPredicted RBP12.76□□□□□ -0.37
CD44-227ENST00000528086 ARHGEF6Q15052 776 aa12.76□□□□□ -0.37
CD44-227ENST00000528086 SPICE1Q8N0Z3 855 aa12.76□□□□□ -0.37
CD44-227ENST00000528086 VCPKMTQ9H867 229 aa12.76□□□□□ -0.37
CD44-227ENST00000528086 FBXO28Q9NVF7 368 aa12.76□□□□□ -0.37
CD44-227ENST00000528086 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.76□□□□□ -0.37
CD44-227ENST00000528086 ADCY3O60266 1144 aa12.75□□□□□ -0.37
CD44-227ENST00000528086 IGHA2P01877 340 aa12.75□□□□□ -0.37
CD44-227ENST00000528086 GSPT1P15170 499 aaKnown RBP12.75□□□□□ -0.37
CD44-227ENST00000528086 MORN1Q5T089 497 aa12.75□□□□□ -0.37
CD44-227ENST00000528086 UBE2Q1Q7Z7E8 422 aa12.75□□□□□ -0.37
CD44-227ENST00000528086 GPRC5AQ8NFJ5 357 aa12.75□□□□□ -0.37
CD44-227ENST00000528086 RAET1EQ8TD07 263 aa12.75□□□□□ -0.37
CD44-227ENST00000528086 PAGR1Q9BTK6 254 aa12.75□□□□□ -0.37
CD44-227ENST00000528086 UNC93B1Q9H1C4 597 aa12.75□□□□□ -0.37
CD44-227ENST00000528086 SMCHD1A6NHR9 2005 aa12.74□□□□□ -0.37
CD44-227ENST00000528086 PLIN4Q96Q06 1357 aa12.74□□□□□ -0.37
CD44-227ENST00000528086 INHAP05111 366 aa12.74□□□□□ -0.37
CD44-227ENST00000528086 FGRP09769 529 aa12.74□□□□□ -0.37
CD44-227ENST00000528086 CCL5P13501 91 aa12.74□□□□□ -0.37
CD44-227ENST00000528086 HOXD10P28358 340 aa12.74□□□□□ -0.37
CD44-227ENST00000528086 CTDSPL2Q05D32 466 aa12.74□□□□□ -0.37
CD44-227ENST00000528086 PPARAQ07869 468 aa12.74□□□□□ -0.37
CD44-227ENST00000528086 ALX1Q15699 326 aa12.74□□□□□ -0.37
CD44-227ENST00000528086 GPR142Q7Z601 462 aa12.74□□□□□ -0.37
CD44-227ENST00000528086 REPS2Q8NFH8 660 aa12.74□□□□□ -0.37
CD44-227ENST00000528086 PXYLP1Q8TE99 480 aa12.74□□□□□ -0.37
CD44-227ENST00000528086 TRIB2Q92519 343 aa12.74□□□□□ -0.37
CD44-227ENST00000528086 ATG4CQ96DT6 458 aa12.74□□□□□ -0.37
CD44-227ENST00000528086 CEP95Q96GE4 821 aa12.74□□□□□ -0.37
CD44-227ENST00000528086 KANSL2Q9H9L4 492 aa12.74□□□□□ -0.37
CD44-227ENST00000528086 HELLSQ9NRZ9 838 aa12.74□□□□□ -0.37
CD44-227ENST00000528086 ADAMTS5Q9UNA0 930 aa12.74□□□□□ -0.37
CD44-227ENST00000528086 RABGAP1Q9Y3P9 1069 aa12.74□□□□□ -0.37
CD44-227ENST00000528086 FGAP02671 866 aa12.73□□□□□ -0.37
CD44-227ENST00000528086 APPP05067 770 aa12.73□□□□□ -0.37
CD44-227ENST00000528086 HSPD1P10809 573 aaKnown RBP12.73□□□□□ -0.37
CD44-227ENST00000528086 SDSP20132 328 aa12.73□□□□□ -0.37
CD44-227ENST00000528086 DSG3P32926 999 aa12.73□□□□□ -0.37
CD44-227ENST00000528086 TDO2P48775 406 aa12.73□□□□□ -0.37
CD44-227ENST00000528086 COG2Q14746 738 aa12.73□□□□□ -0.37
CD44-227ENST00000528086 CCL14Q16627 93 aa12.73□□□□□ -0.37
CD44-227ENST00000528086 FAM47AQ5JRC9 791 aa12.73□□□□□ -0.37
CD44-227ENST00000528086 RASGRP2Q7LDG7 609 aa12.73□□□□□ -0.37
CD44-227ENST00000528086 NBPF11Q86T75 865 aa12.73□□□□□ -0.37
CD44-227ENST00000528086 SLAIN1Q8ND83 568 aa12.73□□□□□ -0.37
CD44-227ENST00000528086 NUP88Q99567 741 aaPredicted RBP12.73□□□□□ -0.37
CD44-227ENST00000528086 IL17RBQ9NRM6 502 aa12.73□□□□□ -0.37
CD44-227ENST00000528086 NYAP2Q9P242 653 aa12.73□□□□□ -0.37
CD44-227ENST00000528086 ANAPC4Q9UJX5 808 aa12.73□□□□□ -0.37
CD44-227ENST00000528086 ALPK3Q96L96 1907 aa12.72□□□□□ -0.37
CD44-227ENST00000528086 LAMA4Q16363 1823 aa12.72□□□□□ -0.37
CD44-227ENST00000528086 NMT2O60551 498 aa12.72□□□□□ -0.37
CD44-227ENST00000528086 NDUFB10O96000 172 aa12.72□□□□□ -0.37
CD44-227ENST00000528086 CYP2B6P20813 491 aa12.72□□□□□ -0.37
CD44-227ENST00000528086 NOVP48745 357 aa12.72□□□□□ -0.37
CD44-227ENST00000528086 MCMDC2Q4G0Z9 681 aa12.72□□□□□ -0.37
CD44-227ENST00000528086 SKAP1Q86WV1 359 aa12.72□□□□□ -0.37
CD44-227ENST00000528086 NEDD1Q8NHV4 660 aa12.72□□□□□ -0.37
CD44-227ENST00000528086 LPAR1Q92633 364 aa12.72□□□□□ -0.37
CD44-227ENST00000528086 MKL1Q969V6 931 aa12.72□□□□□ -0.37
CD44-227ENST00000528086 COA7Q96BR5 231 aa12.72□□□□□ -0.37
CD44-227ENST00000528086 DDRGK1Q96HY6 314 aa12.72□□□□□ -0.37
CD44-227ENST00000528086 MOV10L1Q9BXT6 1211 aaKnown RBP12.72□□□□□ -0.37
CD44-227ENST00000528086 NAPBQ9H115 298 aa12.72□□□□□ -0.37
CD44-227ENST00000528086 PAK6Q9NQU5 681 aaPredicted RBP12.72□□□□□ -0.37
CD44-227ENST00000528086 MTMR4Q9NYA4 1195 aa12.72□□□□□ -0.37
CD44-227ENST00000528086 FLRT1Q9NZU1 646 aa12.72□□□□□ -0.37
CD44-227ENST00000528086 ZNF236Q9UL36 1845 aa12.72□□□□□ -0.37
CD44-227ENST00000528086 WDR46O15213 610 aaKnown RBP12.71□□□□□ -0.37
CD44-227ENST00000528086 GJB1P08034 283 aa12.71□□□□□ -0.37
CD44-227ENST00000528086 MNX1P50219 401 aaPredicted RBP12.71□□□□□ -0.37
CD44-227ENST00000528086 ATP2B2Q01814 1243 aa12.71□□□□□ -0.37
CD44-227ENST00000528086 TMEM132BQ14DG7 1078 aa12.71□□□□□ -0.37
CD44-227ENST00000528086 LRRFIP1Q32MZ4 808 aaKnown RBP12.71□□□□□ -0.37
CD44-227ENST00000528086 FAM83BQ5T0W9 1011 aa12.71□□□□□ -0.37
CD44-227ENST00000528086 MAP3K21Q5TCX8 1036 aa12.71□□□□□ -0.37
CD44-227ENST00000528086 TICAM2Q86XR7 235 aa12.71□□□□□ -0.37
CD44-227ENST00000528086 AMOTL1Q8IY63 956 aa12.71□□□□□ -0.37
CD44-227ENST00000528086 NPLOC4Q8TAT6 608 aa12.71□□□□□ -0.37
CD44-227ENST00000528086 GTF3C2Q8WUA4 911 aaPredicted RBP12.71□□□□□ -0.37
CD44-227ENST00000528086 RILPL2Q969X0 211 aa12.71□□□□□ -0.37
CD44-227ENST00000528086 TANGO6Q9C0B7 1094 aa12.71□□□□□ -0.37
CD44-227ENST00000528086 MKNK2Q9HBH9 465 aa12.71□□□□□ -0.37
CD44-227ENST00000528086 ARHGEF10LQ9HCE6 1279 aa12.71□□□□□ -0.37
CD44-227ENST00000528086 FRMPD3Q5JV73 1810 aa12.71□□□□□ -0.38
CD44-227ENST00000528086 CCDC171Q6TFL3 1326 aa12.7□□□□□ -0.38
CD44-227ENST00000528086 TRIM6-TRIM34B2RNG4 842 aa12.7□□□□□ -0.38
CD44-227ENST00000528086 F5H6K3 240 aa12.7□□□□□ -0.38
CD44-227ENST00000528086 PTPREP23469 700 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms