RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 PCDHGB7Q9Y5F8 929 aa6.17□□□□□ -1.42
CD44-219ENST00000525685 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.16□□□□□ -1.42
CD44-219ENST00000525685 TPP2P29144 1249 aaPredicted RBP6.16□□□□□ -1.42
CD44-219ENST00000525685 CRKP46108 304 aa6.16□□□□□ -1.42
CD44-219ENST00000525685 TNNI2P48788 182 aa6.16□□□□□ -1.42
CD44-219ENST00000525685 ZNF296Q8WUU4 475 aaPredicted RBP6.16□□□□□ -1.42
CD44-219ENST00000525685 CCDC120Q96HB5 630 aa6.16□□□□□ -1.42
CD44-219ENST00000525685 KIRREL1Q96J84 757 aa6.16□□□□□ -1.42
CD44-219ENST00000525685 KREMEN1Q96MU8 473 aa6.16□□□□□ -1.42
CD44-219ENST00000525685 KRTAP9-9Q9BYP9 154 aa6.16□□□□□ -1.42
CD44-219ENST00000525685 KRTAP9-4Q9BYQ2 154 aa6.16□□□□□ -1.42
CD44-219ENST00000525685 BRMS1Q9HCU9 246 aa6.16□□□□□ -1.42
CD44-219ENST00000525685 GPATCH2Q9NW75 528 aa6.16□□□□□ -1.42
CD44-219ENST00000525685 SLAMF8Q9P0V8 285 aa6.16□□□□□ -1.42
CD44-219ENST00000525685 ADAMTS1Q9UHI8 967 aa6.16□□□□□ -1.42
CD44-219ENST00000525685 KCNH3Q9ULD8 1083 aa6.16□□□□□ -1.42
CD44-219ENST00000525685 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.16□□□□□ -1.42
CD44-219ENST00000525685 DNAJC25-GNG10A0A024R161 153 aa6.15□□□□□ -1.42
CD44-219ENST00000525685 SLC22A31A6NKX4 558 aa6.15□□□□□ -1.42
CD44-219ENST00000525685 FARP2O94887 1054 aaPredicted RBP6.15□□□□□ -1.42
CD44-219ENST00000525685 ATE1O95260 518 aa6.15□□□□□ -1.42
CD44-219ENST00000525685 RALGPS1Q5JS13 557 aa6.15□□□□□ -1.42
CD44-219ENST00000525685 TSPYL5Q86VY4 417 aaPredicted RBP6.15□□□□□ -1.42
CD44-219ENST00000525685 CREG2Q8IUH2 290 aa6.15□□□□□ -1.42
CD44-219ENST00000525685 PHACTR4Q8IZ21 702 aa6.15□□□□□ -1.42
CD44-219ENST00000525685 VWCEQ96DN2 955 aa6.15□□□□□ -1.42
CD44-219ENST00000525685 KIF2CQ99661 725 aa6.15□□□□□ -1.42
CD44-219ENST00000525685 SPON2Q9BUD6 331 aa6.15□□□□□ -1.42
CD44-219ENST00000525685 ASPNQ9BXN1 380 aa6.15□□□□□ -1.42
CD44-219ENST00000525685 PCDHB14Q9Y5E9 798 aa6.15□□□□□ -1.42
CD44-219ENST00000525685 RGS13O14921 159 aa6.14□□□□□ -1.43
CD44-219ENST00000525685 GLI1P08151 1106 aa6.14□□□□□ -1.43
CD44-219ENST00000525685 GNL2Q13823 731 aaKnown RBP6.14□□□□□ -1.43
CD44-219ENST00000525685 MLECQ14165 292 aa6.14□□□□□ -1.43
CD44-219ENST00000525685 TTC6Q86TZ1 520 aa6.14□□□□□ -1.43
CD44-219ENST00000525685 KIAA0825Q8IV33 1275 aa6.14□□□□□ -1.43
CD44-219ENST00000525685 LIN37Q96GY3 246 aaPredicted RBP6.14□□□□□ -1.43
CD44-219ENST00000525685 EHMT1Q9H9B1 1298 aa6.14□□□□□ -1.43
CD44-219ENST00000525685 FAM53CQ9NYF3 392 aa6.14□□□□□ -1.43
CD44-219ENST00000525685 DUSP13Q9UII6 198 aa6.14□□□□□ -1.43
CD44-219ENST00000525685 DDX41Q9UJV9 622 aaKnown RBP6.14□□□□□ -1.43
CD44-219ENST00000525685 TMEM59LQ9UK28 342 aa6.14□□□□□ -1.43
CD44-219ENST00000525685 INPP5FQ9Y2H2 1132 aa6.14□□□□□ -1.43
CD44-219ENST00000525685 ZCCHC6Q5VYS8 1495 aaKnown RBP6.14□□□□□ -1.43
CD44-219ENST00000525685 LRRC10BA6NIK2 292 aa6.13□□□□□ -1.43
CD44-219ENST00000525685 BTBD11A6QL63 1104 aa6.13□□□□□ -1.43
CD44-219ENST00000525685 UBOX5O94941 541 aa6.13□□□□□ -1.43
CD44-219ENST00000525685 EGR3Q06889 387 aa6.13□□□□□ -1.43
CD44-219ENST00000525685 MESP2Q0VG99 397 aa6.13□□□□□ -1.43
CD44-219ENST00000525685 ARSHQ5FYA8 562 aa6.13□□□□□ -1.43
CD44-219ENST00000525685 TMEM67Q5HYA8 995 aa6.13□□□□□ -1.43
CD44-219ENST00000525685 METTL16Q86W50 562 aaKnown RBP6.13□□□□□ -1.43
CD44-219ENST00000525685 TGIF2Q9GZN2 237 aa6.13□□□□□ -1.43
CD44-219ENST00000525685 ADAMTS10Q9H324 1103 aa6.13□□□□□ -1.43
CD44-219ENST00000525685 CAPN10Q9HC96 672 aa6.13□□□□□ -1.43
CD44-219ENST00000525685 UBP1Q9NZI7 540 aa6.13□□□□□ -1.43
CD44-219ENST00000525685 GMIPQ9P107 970 aa6.13□□□□□ -1.43
CD44-219ENST00000525685 SHISA3A0PJX4 238 aa6.12□□□□□ -1.43
CD44-219ENST00000525685 GBP1P32455 592 aa6.12□□□□□ -1.43
CD44-219ENST00000525685 MLANAQ16655 118 aa6.12□□□□□ -1.43
CD44-219ENST00000525685 SEZ6Q53EL9 994 aa6.12□□□□□ -1.43
CD44-219ENST00000525685 OVOS1Q6IE37 1185 aa6.12□□□□□ -1.43
CD44-219ENST00000525685 VPS37DQ86XT2 251 aa6.12□□□□□ -1.43
CD44-219ENST00000525685 REXO1Q8N1G1 1221 aaKnown RBP6.12□□□□□ -1.43
CD44-219ENST00000525685 ACBD3Q9H3P7 528 aa6.12□□□□□ -1.43
CD44-219ENST00000525685 RB1CC1Q8TDY2 1594 aa6.11□□□□□ -1.43
CD44-219ENST00000525685 HPXP02790 462 aa6.11□□□□□ -1.43
CD44-219ENST00000525685 RAC2P15153 192 aa6.11□□□□□ -1.43
CD44-219ENST00000525685 RAG1P15918 1043 aa6.11□□□□□ -1.43
CD44-219ENST00000525685 MCM4P33991 863 aa6.11□□□□□ -1.43
CD44-219ENST00000525685 HK2P52789 917 aa6.11□□□□□ -1.43
CD44-219ENST00000525685 RACK1P63244 317 aaKnown RBP6.11□□□□□ -1.43
CD44-219ENST00000525685 JAG1P78504 1218 aa6.11□□□□□ -1.43
CD44-219ENST00000525685 CLCQ05315 142 aa6.11□□□□□ -1.43
CD44-219ENST00000525685 APOBRQ0VD83 1088 aa6.11□□□□□ -1.43
CD44-219ENST00000525685 CDCP2Q5VXM1 449 aa6.11□□□□□ -1.43
CD44-219ENST00000525685 NT5C1AQ9BXI3 368 aa6.11□□□□□ -1.43
CD44-219ENST00000525685 CNNM2Q9H8M5 875 aa6.11□□□□□ -1.43
CD44-219ENST00000525685 PCDHA11Q9Y5I1 949 aa6.11□□□□□ -1.43
CD44-219ENST00000525685 NACADO15069 1562 aa6.1□□□□□ -1.43
CD44-219ENST00000525685 ARID1BQ8NFD5 2236 aaPredicted RBP6.1□□□□□ -1.43
CD44-219ENST00000525685 ZGLP1P0C6A0 271 aa6.1□□□□□ -1.43
CD44-219ENST00000525685 LTKP29376 864 aa6.1□□□□□ -1.43
CD44-219ENST00000525685 POLR2BP30876 1174 aaKnown RBP6.1□□□□□ -1.43
CD44-219ENST00000525685 ERVFC1P60507 584 aa6.1□□□□□ -1.43
CD44-219ENST00000525685 FZD5Q13467 585 aa6.1□□□□□ -1.43
CD44-219ENST00000525685 ZNF124Q15973 351 aa6.1□□□□□ -1.43
CD44-219ENST00000525685 PRR23BQ6ZRT6 265 aa6.1□□□□□ -1.43
CD44-219ENST00000525685 GK5Q6ZS86 529 aa6.1□□□□□ -1.43
CD44-219ENST00000525685 KSR1Q8IVT5 923 aa6.1□□□□□ -1.43
CD44-219ENST00000525685 SLITRK4Q8IW52 837 aa6.1□□□□□ -1.43
CD44-219ENST00000525685 ABHD4Q8TB40 342 aa6.1□□□□□ -1.43
CD44-219ENST00000525685 NKD1Q969G9 470 aa6.1□□□□□ -1.43
CD44-219ENST00000525685 ATG4CQ96DT6 458 aa6.1□□□□□ -1.43
CD44-219ENST00000525685 EAF1Q96JC9 268 aaPredicted RBP6.1□□□□□ -1.43
CD44-219ENST00000525685 FAM84AQ96KN4 292 aa6.1□□□□□ -1.43
CD44-219ENST00000525685 SP110Q9HB58 689 aa6.1□□□□□ -1.43
CD44-219ENST00000525685 RNF4P78317 190 aa6.09□□□□□ -1.43
CD44-219ENST00000525685 TEKQ02763 1124 aa6.09□□□□□ -1.43
CD44-219ENST00000525685 PAK2Q13177 524 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms