RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 F8W735 103 aaPredicted RBP10.4□□□□□ -0.74
LSM1-202ENST00000520286 PIK3R2O00459 728 aa10.4□□□□□ -0.74
LSM1-202ENST00000520286 HSP90AA2PQ14568 343 aaPredicted RBP10.4□□□□□ -0.74
LSM1-202ENST00000520286 ADAT2Q7Z6V5 191 aaKnown RBP10.4□□□□□ -0.74
LSM1-202ENST00000520286 TMEM130Q8N3G9 435 aa10.4□□□□□ -0.74
LSM1-202ENST00000520286 LRRN4CLQ8ND94 238 aa10.4□□□□□ -0.74
LSM1-202ENST00000520286 EXOC2Q96KP1 924 aa10.4□□□□□ -0.74
LSM1-202ENST00000520286 IPO9Q96P70 1041 aaKnown RBP10.4□□□□□ -0.74
LSM1-202ENST00000520286 GBP3Q9H0R5 595 aa10.4□□□□□ -0.74
LSM1-202ENST00000520286 APEX2Q9UBZ4 518 aa10.4□□□□□ -0.74
LSM1-202ENST00000520286 ITGAVP06756 1048 aa10.39□□□□□ -0.75
LSM1-202ENST00000520286 CBX2Q14781 532 aaPredicted RBP10.39□□□□□ -0.75
LSM1-202ENST00000520286 PRRT3Q5FWE3 981 aa10.39□□□□□ -0.75
LSM1-202ENST00000520286 FAM209AQ5JX71 171 aa10.39□□□□□ -0.75
LSM1-202ENST00000520286 NIM1KQ8IY84 436 aa10.39□□□□□ -0.75
LSM1-202ENST00000520286 NINJ1Q92982 152 aa10.39□□□□□ -0.75
LSM1-202ENST00000520286 KISS1RQ969F8 398 aaPredicted RBP10.39□□□□□ -0.75
LSM1-202ENST00000520286 AARSD1Q9BTE6 412 aaKnown RBP10.39□□□□□ -0.75
LSM1-202ENST00000520286 DHRS4Q9BTZ2 278 aa10.39□□□□□ -0.75
LSM1-202ENST00000520286 CEP131Q9UPN4 1083 aa10.39□□□□□ -0.75
LSM1-202ENST00000520286 VIL1P09327 827 aaKnown RBP10.38□□□□□ -0.75
LSM1-202ENST00000520286 RAB6AP20340 208 aa10.38□□□□□ -0.75
LSM1-202ENST00000520286 PPP2R2AP63151 447 aa10.38□□□□□ -0.75
LSM1-202ENST00000520286 PABPC4Q13310 644 aaKnown RBP eCLIP10.38□□□□□ -0.75
LSM1-202ENST00000520286 TM4SF20Q53R12 229 aa10.38□□□□□ -0.75
LSM1-202ENST00000520286 ANKRD39Q53RE8 183 aa10.38□□□□□ -0.75
LSM1-202ENST00000520286 NBPF12Q5TAG4 269 aaPredicted RBP10.38□□□□□ -0.75
LSM1-202ENST00000520286 YOD1Q5VVQ6 348 aaPredicted RBP10.38□□□□□ -0.75
LSM1-202ENST00000520286 SHISA2Q6UWI4 295 aa10.38□□□□□ -0.75
LSM1-202ENST00000520286 DHX37Q8IY37 1157 aaKnown RBP10.38□□□□□ -0.75
LSM1-202ENST00000520286 RPUSD2Q8IZ73 545 aaKnown RBP10.38□□□□□ -0.75
LSM1-202ENST00000520286 MFSD3Q96ES6 412 aa10.38□□□□□ -0.75
LSM1-202ENST00000520286 ACSS3Q9H6R3 686 aa10.38□□□□□ -0.75
LSM1-202ENST00000520286 MKL2Q9ULH7 1088 aa10.38□□□□□ -0.75
LSM1-202ENST00000520286 SUGT1Q9Y2Z0 365 aa10.38□□□□□ -0.75
LSM1-202ENST00000520286 MRPS23Q9Y3D9 190 aaKnown RBP10.38□□□□□ -0.75
LSM1-202ENST00000520286 ZNF451Q9Y4E5 1061 aa10.38□□□□□ -0.75
LSM1-202ENST00000520286 TRBV23-1A0A0A0MS06 115 aa10.37□□□□□ -0.75
LSM1-202ENST00000520286 SART1O43290 800 aaKnown RBP10.37□□□□□ -0.75
LSM1-202ENST00000520286 WFS1O76024 890 aa10.37□□□□□ -0.75
LSM1-202ENST00000520286 ALX3O95076 343 aa10.37□□□□□ -0.75
LSM1-202ENST00000520286 PREPP48147 710 aa10.37□□□□□ -0.75
LSM1-202ENST00000520286 USP11P51784 963 aa10.37□□□□□ -0.75
LSM1-202ENST00000520286 RNF4P78317 190 aa10.37□□□□□ -0.75
LSM1-202ENST00000520286 KRT26Q7Z3Y9 468 aa10.37□□□□□ -0.75
LSM1-202ENST00000520286 ZNF227Q86WZ6 799 aa10.37□□□□□ -0.75
LSM1-202ENST00000520286 ZNF513Q8N8E2 541 aaPredicted RBP10.37□□□□□ -0.75
LSM1-202ENST00000520286 DNAJB8Q8NHS0 232 aa10.37□□□□□ -0.75
LSM1-202ENST00000520286 MIPEPQ99797 713 aa10.37□□□□□ -0.75
LSM1-202ENST00000520286 NCOA5Q9HCD5 579 aaKnown RBP10.37□□□□□ -0.75
LSM1-202ENST00000520286 RFPL3O75679 317 aa10.36□□□□□ -0.75
LSM1-202ENST00000520286 PPM1BO75688 479 aa10.36□□□□□ -0.75
LSM1-202ENST00000520286 CD247P20963 164 aa10.36□□□□□ -0.75
LSM1-202ENST00000520286 GRIK4Q16099 956 aa10.36□□□□□ -0.75
LSM1-202ENST00000520286 SCUBE1Q8IWY4 988 aa10.36□□□□□ -0.75
LSM1-202ENST00000520286 C7orf61Q8IZ16 206 aa10.36□□□□□ -0.75
LSM1-202ENST00000520286 BVESQ8NE79 360 aa10.36□□□□□ -0.75
LSM1-202ENST00000520286 KREMEN1Q96MU8 473 aa10.36□□□□□ -0.75
LSM1-202ENST00000520286 LGR4Q9BXB1 951 aa10.36□□□□□ -0.75
LSM1-202ENST00000520286 AKTIPQ9H8T0 292 aa10.36□□□□□ -0.75
LSM1-202ENST00000520286 WHRNQ9P202 907 aa10.36□□□□□ -0.75
LSM1-202ENST00000520286 DAGLAQ9Y4D2 1042 aa10.36□□□□□ -0.75
LSM1-202ENST00000520286 KRBA1A5PL33 1030 aa10.35□□□□□ -0.75
LSM1-202ENST00000520286 IRS4O14654 1257 aaPredicted RBP10.35□□□□□ -0.75
LSM1-202ENST00000520286 PLD2O14939 933 aa10.35□□□□□ -0.75
LSM1-202ENST00000520286 GAS2O43903 313 aaKnown RBP10.35□□□□□ -0.75
LSM1-202ENST00000520286 ARHGEF15O94989 841 aa10.35□□□□□ -0.75
LSM1-202ENST00000520286 AUHQ13825 339 aaKnown RBP10.35□□□□□ -0.75
LSM1-202ENST00000520286 LETMD1Q6P1Q0 360 aa10.35□□□□□ -0.75
LSM1-202ENST00000520286 VWCEQ96DN2 955 aa10.35□□□□□ -0.75
LSM1-202ENST00000520286 CEP41Q9BYV8 373 aa10.35□□□□□ -0.75
LSM1-202ENST00000520286 METTL14Q9HCE5 456 aaKnown RBP10.35□□□□□ -0.75
LSM1-202ENST00000520286 NOP53Q9NZM5 478 aaKnown RBP10.35□□□□□ -0.75
LSM1-202ENST00000520286 COL17A1Q9UMD9 1497 aaPredicted RBP10.35□□□□□ -0.75
LSM1-202ENST00000520286 NOP56O00567 594 aaKnown RBP10.34□□□□□ -0.75
LSM1-202ENST00000520286 SHOXO15266 292 aa10.34□□□□□ -0.75
LSM1-202ENST00000520286 RAPGEF3O95398 923 aa10.34□□□□□ -0.75
LSM1-202ENST00000520286 FGFR1P11362 822 aa10.34□□□□□ -0.75
LSM1-202ENST00000520286 MYCLP1P12525 358 aaPredicted RBP10.34□□□□□ -0.75
LSM1-202ENST00000520286 FNDC3BQ53EP0 1204 aaKnown RBP10.34□□□□□ -0.75
LSM1-202ENST00000520286 CDPF1Q6NVV7 123 aa10.34□□□□□ -0.75
LSM1-202ENST00000520286 CDH24Q86UP0 819 aa10.34□□□□□ -0.75
LSM1-202ENST00000520286 RIN3Q8TB24 985 aa10.34□□□□□ -0.75
LSM1-202ENST00000520286 LGR6Q9HBX8 967 aa10.34□□□□□ -0.75
LSM1-202ENST00000520286 GP6Q9HCN6 339 aa10.34□□□□□ -0.75
LSM1-202ENST00000520286 USP21Q9UK80 565 aa10.34□□□□□ -0.75
LSM1-202ENST00000520286 PRODHO43272 600 aa10.33□□□□□ -0.76
LSM1-202ENST00000520286 TBX1O43435 398 aa10.33□□□□□ -0.76
LSM1-202ENST00000520286 SLITRK5O94991 958 aa10.33□□□□□ -0.76
LSM1-202ENST00000520286 ITGA4P13612 1032 aa10.33□□□□□ -0.76
LSM1-202ENST00000520286 GLB1P16278 677 aa10.33□□□□□ -0.76
LSM1-202ENST00000520286 CNGA1P29973 690 aa10.33□□□□□ -0.76
LSM1-202ENST00000520286 ETV3P41162 512 aa10.33□□□□□ -0.76
LSM1-202ENST00000520286 GRIA2P42262 883 aa10.33□□□□□ -0.76
LSM1-202ENST00000520286 THNSL2Q86YJ6 484 aa10.33□□□□□ -0.76
LSM1-202ENST00000520286 YIPF2Q9BWQ6 316 aa10.33□□□□□ -0.76
LSM1-202ENST00000520286 SEMA6CQ9H3T2 930 aa10.33□□□□□ -0.76
LSM1-202ENST00000520286 DDX56Q9NY93 547 aaKnown RBP10.33□□□□□ -0.76
LSM1-202ENST00000520286 FBXL21Q9UKT6 434 aa10.33□□□□□ -0.76
LSM1-202ENST00000520286 AKT3Q9Y243 479 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms