RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 TCHPQ9BT92 498 aa13.08□□□□□ -0.32
SYNPO-204ENST00000519664 MAGEA1P43355 309 aa13.08□□□□□ -0.32
SYNPO-204ENST00000519664 DIXDC1Q155Q3 683 aa13.08□□□□□ -0.32
SYNPO-204ENST00000519664 CALCRLQ16602 461 aa13.08□□□□□ -0.32
SYNPO-204ENST00000519664 ERFEQ4G0M1 354 aa13.08□□□□□ -0.32
SYNPO-204ENST00000519664 NCAPH2Q6IBW4 605 aa13.08□□□□□ -0.32
SYNPO-204ENST00000519664 CCDC65Q8IXS2 484 aa13.08□□□□□ -0.32
SYNPO-204ENST00000519664 TTF2Q9UNY4 1162 aaKnown RBP13.08□□□□□ -0.32
SYNPO-204ENST00000519664 DDX39AO00148 427 aaKnown RBP13.08□□□□□ -0.32
SYNPO-204ENST00000519664 CTNNA2P26232 953 aa13.08□□□□□ -0.32
SYNPO-204ENST00000519664 MNAT1P51948 309 aa13.08□□□□□ -0.32
SYNPO-204ENST00000519664 TTC31Q49AM3 519 aaPredicted RBP13.08□□□□□ -0.32
SYNPO-204ENST00000519664 RRAGAQ7L523 313 aa13.08□□□□□ -0.32
SYNPO-204ENST00000519664 C2CD5Q86YS7 1000 aa13.08□□□□□ -0.32
SYNPO-204ENST00000519664 TBC1D10CQ8IV04 446 aa13.08□□□□□ -0.32
SYNPO-204ENST00000519664 TBC1D5Q92609 795 aa13.08□□□□□ -0.32
SYNPO-204ENST00000519664 SLC39A2Q9NP94 309 aa13.08□□□□□ -0.32
SYNPO-204ENST00000519664 DOK7Q18PE1 504 aa13.07□□□□□ -0.32
SYNPO-204ENST00000519664 CNNM4Q6P4Q7 775 aa13.07□□□□□ -0.32
SYNPO-204ENST00000519664 CPXCR1Q8N123 301 aa13.07□□□□□ -0.32
SYNPO-204ENST00000519664 PAF1Q8N7H5 531 aa13.07□□□□□ -0.32
SYNPO-204ENST00000519664 RDH13Q8NBN7 331 aa13.07□□□□□ -0.32
SYNPO-204ENST00000519664 GPR101Q96P66 508 aaPredicted RBP13.07□□□□□ -0.32
SYNPO-204ENST00000519664 GOLPH3LQ9H4A5 285 aa13.07□□□□□ -0.32
SYNPO-204ENST00000519664 CPS1P31327 1500 aa13.07□□□□□ -0.32
SYNPO-204ENST00000519664 A0A0G2JLW4 131 aa13.07□□□□□ -0.32
SYNPO-204ENST00000519664 KCNJ18B7U540 433 aa13.07□□□□□ -0.32
SYNPO-204ENST00000519664 SH2B2O14492 632 aaPredicted RBP13.07□□□□□ -0.32
SYNPO-204ENST00000519664 CASP14P31944 242 aa13.07□□□□□ -0.32
SYNPO-204ENST00000519664 SF3A3Q12874 501 aaKnown RBP eCLIP13.07□□□□□ -0.32
SYNPO-204ENST00000519664 UBE4AQ14139 1066 aa13.07□□□□□ -0.32
SYNPO-204ENST00000519664 KCNJ12Q14500 433 aa13.07□□□□□ -0.32
SYNPO-204ENST00000519664 STRBPQ96SI9 672 aaKnown RBP13.07□□□□□ -0.32
SYNPO-204ENST00000519664 CDCA7Q9BWT1 371 aaPredicted RBP13.07□□□□□ -0.32
SYNPO-204ENST00000519664 DYNLL2Q96FJ2 89 aa13.07□□□□□ -0.32
SYNPO-204ENST00000519664 TRIM31Q9BZY9 425 aa13.07□□□□□ -0.32
SYNPO-204ENST00000519664 CFAP74Q9C0B2 1584 aa13.07□□□□□ -0.32
SYNPO-204ENST00000519664 NPHP4O75161 1426 aaPredicted RBP13.07□□□□□ -0.32
SYNPO-204ENST00000519664 ATP10DQ9P241 1426 aa13.07□□□□□ -0.32
SYNPO-204ENST00000519664 CFBP00751 764 aa13.06□□□□□ -0.32
SYNPO-204ENST00000519664 USP17L8P0C7I0 530 aa13.06□□□□□ -0.32
SYNPO-204ENST00000519664 ADCY7P51828 1080 aa13.06□□□□□ -0.32
SYNPO-204ENST00000519664 VAV2P52735 878 aa13.06□□□□□ -0.32
SYNPO-204ENST00000519664 HDXQ7Z353 690 aa13.06□□□□□ -0.32
SYNPO-204ENST00000519664 KIAA0825Q8IV33 1275 aa13.06□□□□□ -0.32
SYNPO-204ENST00000519664 RBM17Q96I25 401 aaKnown RBP13.06□□□□□ -0.32
SYNPO-204ENST00000519664 PARP3Q9Y6F1 533 aa13.06□□□□□ -0.32
SYNPO-204ENST00000519664 PTPRMP28827 1452 aa13.06□□□□□ -0.32
SYNPO-204ENST00000519664 MORC3Q14149 939 aa13.06□□□□□ -0.32
SYNPO-204ENST00000519664 DPP8Q6V1X1 898 aaPredicted RBP13.06□□□□□ -0.32
SYNPO-204ENST00000519664 CYB5R4Q7L1T6 521 aa13.06□□□□□ -0.32
SYNPO-204ENST00000519664 KRT25Q7Z3Z0 450 aa13.06□□□□□ -0.32
SYNPO-204ENST00000519664 CPVLQ9H3G5 476 aa13.06□□□□□ -0.32
SYNPO-204ENST00000519664 SRP68Q9UHB9 627 aaKnown RBP13.06□□□□□ -0.32
SYNPO-204ENST00000519664 ENC1O14682 589 aa13.06□□□□□ -0.32
SYNPO-204ENST00000519664 MYCNP04198 464 aaPredicted RBP13.06□□□□□ -0.32
SYNPO-204ENST00000519664 MSL1Q68DK7 614 aa13.06□□□□□ -0.32
SYNPO-204ENST00000519664 PPP4R3AQ6IN85 833 aa13.06□□□□□ -0.32
SYNPO-204ENST00000519664 CCDC91Q7Z6B0 441 aa13.06□□□□□ -0.32
SYNPO-204ENST00000519664 CCDC25Q86WR0 208 aa13.06□□□□□ -0.32
SYNPO-204ENST00000519664 TMEM87AQ8NBN3 555 aa13.06□□□□□ -0.32
SYNPO-204ENST00000519664 OR8K1Q8NGG5 319 aa13.06□□□□□ -0.32
SYNPO-204ENST00000519664 FAM212AQ96EL1 285 aa13.06□□□□□ -0.32
SYNPO-204ENST00000519664 ZNF335Q9H4Z2 1342 aaPredicted RBP13.05□□□□□ -0.32
SYNPO-204ENST00000519664 IFNAR1P17181 557 aa13.05□□□□□ -0.32
SYNPO-204ENST00000519664 IFI16Q16666 785 aaKnown RBP13.05□□□□□ -0.32
SYNPO-204ENST00000519664 CCDC144BQ3MJ40 725 aa13.05□□□□□ -0.32
SYNPO-204ENST00000519664 BRINP3Q76B58 766 aa13.05□□□□□ -0.32
SYNPO-204ENST00000519664 PDLIM2Q96JY6 352 aa13.05□□□□□ -0.32
SYNPO-204ENST00000519664 PPP1R13BQ96KQ4 1090 aa13.05□□□□□ -0.32
SYNPO-204ENST00000519664 SELENOOQ9BVL4 669 aa13.05□□□□□ -0.32
SYNPO-204ENST00000519664 ARPP21Q9UBL0 812 aaPredicted RBP13.05□□□□□ -0.32
SYNPO-204ENST00000519664 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.05□□□□□ -0.32
SYNPO-204ENST00000519664 ZNF804BA4D1E1 1349 aa13.05□□□□□ -0.32
SYNPO-204ENST00000519664 USP40Q9NVE5 1235 aa13.05□□□□□ -0.32
SYNPO-204ENST00000519664 CETN3O15182 167 aa13.05□□□□□ -0.32
SYNPO-204ENST00000519664 CLEC17AQ6ZS10 378 aa13.05□□□□□ -0.32
SYNPO-204ENST00000519664 GOLGA6L7A0A1B0GV03 622 aa13.05□□□□□ -0.32
SYNPO-204ENST00000519664 PLEKHA8P1O95397 391 aa13.05□□□□□ -0.32
SYNPO-204ENST00000519664 SPATA1Q5VX52 437 aa13.05□□□□□ -0.32
SYNPO-204ENST00000519664 HOMER2Q9NSB8 354 aa13.05□□□□□ -0.32
SYNPO-204ENST00000519664 MMP1P03956 469 aa13.04□□□□□ -0.32
SYNPO-204ENST00000519664 ATG3Q9NT62 314 aa13.04□□□□□ -0.32
SYNPO-204ENST00000519664 PCDHB13Q9Y5F0 798 aa13.04□□□□□ -0.32
SYNPO-204ENST00000519664 PPRC1Q5VV67 1664 aaKnown RBP13.04□□□□□ -0.32
SYNPO-204ENST00000519664 FMNL1O95466 1100 aaPredicted RBP13.04□□□□□ -0.32
SYNPO-204ENST00000519664 HPDP32754 393 aaPredicted RBP13.04□□□□□ -0.32
SYNPO-204ENST00000519664 BTDP43251 543 aa13.04□□□□□ -0.32
SYNPO-204ENST00000519664 SECISBP2LQ93073 1101 aaKnown RBP13.04□□□□□ -0.32
SYNPO-204ENST00000519664 GOLGA6L10A0A0M3HER8 536 aa13.04□□□□□ -0.32
SYNPO-204ENST00000519664 HARSP12081 509 aaKnown RBP13.04□□□□□ -0.32
SYNPO-204ENST00000519664 OAS2P29728 719 aaKnown RBP13.04□□□□□ -0.32
SYNPO-204ENST00000519664 CDC27P30260 824 aa13.04□□□□□ -0.32
SYNPO-204ENST00000519664 KLHL7Q8IXQ5 586 aa13.04□□□□□ -0.32
SYNPO-204ENST00000519664 TAOK3Q9H2K8 898 aa13.04□□□□□ -0.32
SYNPO-204ENST00000519664 ANKARQ7Z5J8 1434 aa13.04□□□□□ -0.32
SYNPO-204ENST00000519664 USP17L3A6NCW0 530 aa13.03□□□□□ -0.32
SYNPO-204ENST00000519664 USP17L4A6NCW7 530 aa13.03□□□□□ -0.32
SYNPO-204ENST00000519664 SEC31AO94979 1220 aaKnown RBP13.03□□□□□ -0.32
SYNPO-204ENST00000519664 CFAP58Q5T655 872 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms