RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 CCL15Q16663 113 aa9.15□□□□□ -0.94
LIMCH1-222ENST00000515847 AKNAD1Q5T1N1 836 aa9.15□□□□□ -0.94
LIMCH1-222ENST00000515847 FASTKD5Q7L8L6 764 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-222ENST00000515847 STK11IPQ8N1F8 1099 aa9.15□□□□□ -0.94
LIMCH1-222ENST00000515847 STAG1Q8WVM7 1258 aa9.15□□□□□ -0.94
LIMCH1-222ENST00000515847 BRI3BPQ8WY22 251 aa9.15□□□□□ -0.94
LIMCH1-222ENST00000515847 IL25Q9H293 177 aa9.15□□□□□ -0.94
LIMCH1-222ENST00000515847 KANSL2Q9H9L4 492 aa9.15□□□□□ -0.94
LIMCH1-222ENST00000515847 TSKSQ9UJT2 592 aa9.15□□□□□ -0.94
LIMCH1-222ENST00000515847 PNMA3Q9UL41 463 aa9.15□□□□□ -0.94
LIMCH1-222ENST00000515847 KCNH4Q9UQ05 1017 aa9.15□□□□□ -0.94
LIMCH1-222ENST00000515847 AFG3L2Q9Y4W6 797 aa9.15□□□□□ -0.94
LIMCH1-222ENST00000515847 ZHX2Q9Y6X8 837 aa9.15□□□□□ -0.94
LIMCH1-222ENST00000515847 TESPA1A2RU30 521 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-222ENST00000515847 TRIM75PA6NK02 468 aa9.14□□□□□ -0.95
LIMCH1-222ENST00000515847 C19orf81C9J6K1 198 aa9.14□□□□□ -0.95
LIMCH1-222ENST00000515847 TRPA1O75762 1119 aa9.14□□□□□ -0.95
LIMCH1-222ENST00000515847 HMGB1P09429 215 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-222ENST00000515847 RAB3GAP1Q15042 981 aa9.14□□□□□ -0.95
LIMCH1-222ENST00000515847 ZNF280CQ8ND82 737 aa9.14□□□□□ -0.95
LIMCH1-222ENST00000515847 GTF3C2Q8WUA4 911 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-222ENST00000515847 LPAR1Q92633 364 aa9.14□□□□□ -0.95
LIMCH1-222ENST00000515847 MAP4K1Q92918 833 aa9.14□□□□□ -0.95
LIMCH1-222ENST00000515847 PTPN18Q99952 460 aa9.14□□□□□ -0.95
LIMCH1-222ENST00000515847 UBAC1Q9BSL1 405 aa9.14□□□□□ -0.95
LIMCH1-222ENST00000515847 MTA3Q9BTC8 594 aa9.14□□□□□ -0.95
LIMCH1-222ENST00000515847 WDR18Q9BV38 432 aa9.14□□□□□ -0.95
LIMCH1-222ENST00000515847 GOPCQ9HD26 462 aa9.14□□□□□ -0.95
LIMCH1-222ENST00000515847 RNF186Q9NXI6 227 aa9.14□□□□□ -0.95
LIMCH1-222ENST00000515847 LOC285556D6RIA3 1793 aa9.14□□□□□ -0.95
LIMCH1-222ENST00000515847 LAMA4Q16363 1823 aa9.13□□□□□ -0.95
LIMCH1-222ENST00000515847 A0A0G2JLL6 359 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-222ENST00000515847 BTBD19C9JJ37 291 aa9.13□□□□□ -0.95
LIMCH1-222ENST00000515847 RANBP6O60518 1105 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-222ENST00000515847 HSPA8P11142 646 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-222ENST00000515847 AKR1B1P15121 316 aa9.13□□□□□ -0.95
LIMCH1-222ENST00000515847 PSMA5P28066 241 aa9.13□□□□□ -0.95
LIMCH1-222ENST00000515847 GUCY1A2P33402 732 aa9.13□□□□□ -0.95
LIMCH1-222ENST00000515847 MOGSQ13724 837 aa9.13□□□□□ -0.95
LIMCH1-222ENST00000515847 SEPT2Q15019 361 aa9.13□□□□□ -0.95
LIMCH1-222ENST00000515847 PRRT2Q7Z6L0 340 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-222ENST00000515847 PROCA1Q8NCQ7 364 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-222ENST00000515847 IL27Q8NEV9 243 aa9.13□□□□□ -0.95
LIMCH1-222ENST00000515847 NCOA7Q8NI08 942 aa9.13□□□□□ -0.95
LIMCH1-222ENST00000515847 SAGE1Q9NXZ1 904 aa9.13□□□□□ -0.95
LIMCH1-222ENST00000515847 RBM8AQ9Y5S9 174 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-222ENST00000515847 GREB1LQ9C091 1923 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-222ENST00000515847 USP17L10C9JJH3 530 aa9.12□□□□□ -0.95
LIMCH1-222ENST00000515847 PRDM1O75626 825 aa9.12□□□□□ -0.95
LIMCH1-222ENST00000515847 TTLL1O95922 423 aa9.12□□□□□ -0.95
LIMCH1-222ENST00000515847 CTCFP49711 727 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-222ENST00000515847 HAND2P61296 217 aa9.12□□□□□ -0.95
LIMCH1-222ENST00000515847 CTDSPL2Q05D32 466 aa9.12□□□□□ -0.95
LIMCH1-222ENST00000515847 SPP2Q13103 211 aa9.12□□□□□ -0.95
LIMCH1-222ENST00000515847 DGKZQ13574 1117 aa9.12□□□□□ -0.95
LIMCH1-222ENST00000515847 MTMR2Q13614 643 aa9.12□□□□□ -0.95
LIMCH1-222ENST00000515847 RRP12Q5JTH9 1297 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-222ENST00000515847 USP17L2Q6R6M4 530 aa9.12□□□□□ -0.95
LIMCH1-222ENST00000515847 GADL1Q6ZQY3 521 aa9.12□□□□□ -0.95
LIMCH1-222ENST00000515847 CLEC10AQ8IUN9 316 aa9.12□□□□□ -0.95
LIMCH1-222ENST00000515847 FAM43AQ8N2R8 423 aa9.12□□□□□ -0.95
LIMCH1-222ENST00000515847 NEDD1Q8NHV4 660 aa9.12□□□□□ -0.95
LIMCH1-222ENST00000515847 PARK7Q99497 189 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-222ENST00000515847 LSG1Q9H089 658 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-222ENST00000515847 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.12□□□□□ -0.95
LIMCH1-222ENST00000515847 SLC45A1Q9Y2W3 748 aa9.12□□□□□ -0.95
LIMCH1-222ENST00000515847 TBC1D8O95759 1140 aa9.11□□□□□ -0.95
LIMCH1-222ENST00000515847 FGRP09769 529 aa9.11□□□□□ -0.95
LIMCH1-222ENST00000515847 RASA1P20936 1047 aa9.11□□□□□ -0.95
LIMCH1-222ENST00000515847 OSBPP22059 807 aa9.11□□□□□ -0.95
LIMCH1-222ENST00000515847 LBX1P52954 281 aa9.11□□□□□ -0.95
LIMCH1-222ENST00000515847 EMP3P54852 163 aa9.11□□□□□ -0.95
LIMCH1-222ENST00000515847 HMGCS2P54868 508 aa9.11□□□□□ -0.95
LIMCH1-222ENST00000515847 BACE1P56817 501 aa9.11□□□□□ -0.95
LIMCH1-222ENST00000515847 TFAP4Q01664 338 aa9.11□□□□□ -0.95
LIMCH1-222ENST00000515847 ACER1Q8TDN7 264 aa9.11□□□□□ -0.95
LIMCH1-222ENST00000515847 TTC14Q96N46 770 aa9.11□□□□□ -0.95
LIMCH1-222ENST00000515847 KIAA1683Q9H0B3 1180 aa9.11□□□□□ -0.95
LIMCH1-222ENST00000515847 R3HDMLQ9H3Y0 253 aa9.11□□□□□ -0.95
LIMCH1-222ENST00000515847 TCP11L1Q9NUJ3 509 aa9.11□□□□□ -0.95
LIMCH1-222ENST00000515847 NYAP2Q9P242 653 aa9.11□□□□□ -0.95
LIMCH1-222ENST00000515847 TACC3Q9Y6A5 838 aa9.11□□□□□ -0.95
LIMCH1-222ENST00000515847 WDR19Q8NEZ3 1342 aa9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 PDHXO00330 501 aa9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 MCM5P33992 734 aa9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 ANAPC15P60006 121 aa9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 IRX3P78415 501 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 FGD1P98174 961 aa9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 ATP2B2Q01814 1243 aa9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 CRHR2Q13324 411 aa9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 ARHGEF6Q15052 776 aa9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 TAF1CQ15572 869 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 ZYXQ15942 572 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 SH3D19Q5HYK7 790 aa9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 TREML2Q5T2D2 321 aa9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 CREB3L3Q68CJ9 461 aa9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 RCSD1Q6JBY9 416 aa9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 GPAT2Q6NUI2 795 aa9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 ANKRD23Q86SG2 305 aa9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 TBC1D10CQ8IV04 446 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms