RNA–Protein interactions for RNA: ENST00000514402.1

MATR3-223, Transcript of matrin 3, human

TSL 2

Gene MATR3, Length 556 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-223	ENST00000514402	VWCE	Q96DN2	955 aa		7.11	□□□□□ -1.27
MATR3-223	ENST00000514402	KIF2C	Q99661	725 aa		7.11	□□□□□ -1.27
MATR3-223	ENST00000514402	KRTAP4-12	Q9BQ66	201 aa		7.11	□□□□□ -1.27
MATR3-223	ENST00000514402	DUSP15	Q9H1R2	295 aa	Predicted RBP	7.11	□□□□□ -1.27
MATR3-223	ENST00000514402	CARS2	Q9HA77	564 aa	Known RBP	7.11	□□□□□ -1.27
MATR3-223	ENST00000514402	ZSWIM5	Q9P217	1185 aa		7.11	□□□□□ -1.27
MATR3-223	ENST00000514402	CLC	Q05315	142 aa		7.1	□□□□□ -1.27
MATR3-223	ENST00000514402	GK5	Q6ZS86	529 aa		7.1	□□□□□ -1.27
MATR3-223	ENST00000514402	NLRC3	Q7RTR2	1065 aa		7.1	□□□□□ -1.27
MATR3-223	ENST00000514402	ATG4C	Q96DT6	458 aa		7.1	□□□□□ -1.27
MATR3-223	ENST00000514402	ZNRF3	Q9ULT6	936 aa		7.1	□□□□□ -1.27
MATR3-223	ENST00000514402	RNF114	Q9Y508	228 aa		7.1	□□□□□ -1.27
MATR3-223	ENST00000514402	TNFRSF10C	O14798	259 aa		7.09	□□□□□ -1.27
MATR3-223	ENST00000514402	UBOX5	O94941	541 aa		7.09	□□□□□ -1.27
MATR3-223	ENST00000514402	GAB4	Q2WGN9	574 aa		7.09	□□□□□ -1.27
MATR3-223	ENST00000514402	TSPYL5	Q86VY4	417 aa	Predicted RBP	7.09	□□□□□ -1.27
MATR3-223	ENST00000514402	METTL16	Q86W50	562 aa	Known RBP	7.09	□□□□□ -1.27
MATR3-223	ENST00000514402	TAB3	Q8N5C8	712 aa	Predicted RBP	7.09	□□□□□ -1.27
MATR3-223	ENST00000514402	ENOX1	Q8TC92	643 aa	Known RBP	7.09	□□□□□ -1.27
MATR3-223	ENST00000514402	ESR1	P03372	595 aa		7.08	□□□□□ -1.28
MATR3-223	ENST00000514402	NME1	P15531	152 aa	Known RBP	7.08	□□□□□ -1.28
MATR3-223	ENST00000514402	TPP2	P29144	1249 aa	Predicted RBP	7.08	□□□□□ -1.28
MATR3-223	ENST00000514402	RACK1	P63244	317 aa	Known RBP	7.08	□□□□□ -1.28
MATR3-223	ENST00000514402	INTS3	Q68E01	1043 aa	Known RBP	7.08	□□□□□ -1.28
MATR3-223	ENST00000514402	ALPK1	Q96QP1	1244 aa		7.08	□□□□□ -1.28
MATR3-223	ENST00000514402	CTNND2	Q9UQB3	1225 aa		7.08	□□□□□ -1.28
MATR3-223	ENST00000514402	PCDHGB7	Q9Y5F8	929 aa		7.08	□□□□□ -1.28
MATR3-223	ENST00000514402	GDNF	P39905	211 aa		7.07	□□□□□ -1.28
MATR3-223	ENST00000514402	AFM	P43652	599 aa		7.07	□□□□□ -1.28
MATR3-223	ENST00000514402	RBBP8NL	Q8NC74	664 aa	Predicted RBP	7.07	□□□□□ -1.28
MATR3-223	ENST00000514402	ASCC2	Q9H1I8	757 aa	Predicted RBP	7.07	□□□□□ -1.28
MATR3-223	ENST00000514402	PRDM7	Q9NQW5	492 aa		7.07	□□□□□ -1.28
MATR3-223	ENST00000514402	KIAA1522	Q9P206	1035 aa	Predicted RBP	7.07	□□□□□ -1.28
MATR3-223	ENST00000514402	DUSP13	Q9UII6	198 aa		7.07	□□□□□ -1.28
MATR3-223	ENST00000514402	NBPF12	Q5TAG4	269 aa	Predicted RBP	7.06	□□□□□ -1.28
MATR3-223	ENST00000514402	RASGRP4	Q8TDF6	673 aa		7.06	□□□□□ -1.28
MATR3-223	ENST00000514402	TM9SF2	Q99805	663 aa		7.06	□□□□□ -1.28
MATR3-223	ENST00000514402	UNCX	A6NJT0	531 aa		7.05	□□□□□ -1.28
MATR3-223	ENST00000514402	CLEC3A	O75596	197 aa		7.05	□□□□□ -1.28
MATR3-223	ENST00000514402	HDLBP	Q00341	1268 aa	Known RBP	7.05	□□□□□ -1.28
MATR3-223	ENST00000514402	CREG2	Q8IUH2	290 aa		7.05	□□□□□ -1.28
MATR3-223	ENST00000514402	FAM168A	Q92567	244 aa		7.05	□□□□□ -1.28
MATR3-223	ENST00000514402	FERD3L	Q96RJ6	166 aa		7.05	□□□□□ -1.28
MATR3-223	ENST00000514402	TMEM59L	Q9UK28	342 aa		7.05	□□□□□ -1.28
MATR3-223	ENST00000514402	LRRN2	O75325	713 aa		7.04	□□□□□ -1.28
MATR3-223	ENST00000514402	PAK2	Q13177	524 aa		7.04	□□□□□ -1.28
MATR3-223	ENST00000514402	CLEC16A	Q2KHT3	1053 aa		7.04	□□□□□ -1.28
MATR3-223	ENST00000514402	ZSWIM9	Q86XI8	627 aa		7.04	□□□□□ -1.28
MATR3-223	ENST00000514402	NT5DC4	Q86YG4	428 aa		7.04	□□□□□ -1.28
MATR3-223	ENST00000514402	DAGLB	Q8NCG7	672 aa		7.04	□□□□□ -1.28
MATR3-223	ENST00000514402	SYTL5	Q8TDW5	730 aa	Predicted RBP	7.04	□□□□□ -1.28
MATR3-223	ENST00000514402	SYTL4	Q96C24	671 aa	Predicted RBP	7.04	□□□□□ -1.28
MATR3-223	ENST00000514402	DHRS1	Q96LJ7	313 aa		7.04	□□□□□ -1.28
MATR3-223	ENST00000514402	TGIF2	Q9GZN2	237 aa		7.04	□□□□□ -1.28
MATR3-223	ENST00000514402	PRR13	Q9NZ81	148 aa		7.04	□□□□□ -1.28
MATR3-223	ENST00000514402	CARMIL2	Q6F5E8	1435 aa		7.03	□□□□□ -1.28
MATR3-223	ENST00000514402	LTK	P29376	864 aa		7.03	□□□□□ -1.28
MATR3-223	ENST00000514402	POLR2B	P30876	1174 aa	Known RBP	7.03	□□□□□ -1.28
MATR3-223	ENST00000514402	GJA8	P48165	433 aa		7.03	□□□□□ -1.28
MATR3-223	ENST00000514402	EGR3	Q06889	387 aa		7.03	□□□□□ -1.28
MATR3-223	ENST00000514402	NMI	Q13287	307 aa	Predicted RBP	7.03	□□□□□ -1.28
MATR3-223	ENST00000514402	NBPF9	Q3BBW0	867 aa		7.03	□□□□□ -1.28
MATR3-223	ENST00000514402	DHX38	Q92620	1227 aa	Known RBP	7.03	□□□□□ -1.28
MATR3-223	ENST00000514402	SMARCC1	Q92922	1105 aa	Predicted RBP	7.03	□□□□□ -1.28
MATR3-223	ENST00000514402	GPRASP2	Q96D09	838 aa		7.03	□□□□□ -1.28
MATR3-223	ENST00000514402	C19orf73	Q9NVV2	129 aa		7.03	□□□□□ -1.28
MATR3-223	ENST00000514402	FAM53C	Q9NYF3	392 aa		7.03	□□□□□ -1.28
MATR3-223	ENST00000514402	SLAMF8	Q9P0V8	285 aa		7.03	□□□□□ -1.28
MATR3-223	ENST00000514402	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	7.03	□□□□□ -1.28
MATR3-223	ENST00000514402	RAC2	P15153	192 aa		7.02	□□□□□ -1.29
MATR3-223	ENST00000514402	SOX9	P48436	509 aa		7.02	□□□□□ -1.29
MATR3-223	ENST00000514402	KCNMB1	Q16558	191 aa		7.02	□□□□□ -1.29
MATR3-223	ENST00000514402	ZNF655	Q8N720	491 aa	Predicted RBP	7.02	□□□□□ -1.29
MATR3-223	ENST00000514402	HDAC8	Q9BY41	377 aa		7.02	□□□□□ -1.29
MATR3-223	ENST00000514402	KRTAP9-9	Q9BYP9	154 aa		7.02	□□□□□ -1.29
MATR3-223	ENST00000514402	KRTAP9-4	Q9BYQ2	154 aa		7.02	□□□□□ -1.29
MATR3-223	ENST00000514402	ANTXR1	Q9H6X2	564 aa		7.02	□□□□□ -1.29
MATR3-223	ENST00000514402	RNF111	Q6ZNA4	994 aa		7.01	□□□□□ -1.29
MATR3-223	ENST00000514402	TTC6	Q86TZ1	520 aa		7.01	□□□□□ -1.29
MATR3-223	ENST00000514402	TMEM192	Q8IY95	271 aa		7.01	□□□□□ -1.29
MATR3-223	ENST00000514402	POU5F2	Q8N7G0	328 aa		7.01	□□□□□ -1.29
MATR3-223	ENST00000514402	OR6P1	Q8NGX9	317 aa		7.01	□□□□□ -1.29
MATR3-223	ENST00000514402	KIRREL1	Q96J84	757 aa		7.01	□□□□□ -1.29
MATR3-223	ENST00000514402	SLC6A18	Q96N87	628 aa		7.01	□□□□□ -1.29
MATR3-223	ENST00000514402	SLC9A7	Q96T83	725 aa		7.01	□□□□□ -1.29
MATR3-223	ENST00000514402	SUCO	Q9UBS9	1254 aa	Known RBP	7.01	□□□□□ -1.29
MATR3-223	ENST00000514402	PCDHA11	Q9Y5I1	949 aa		7.01	□□□□□ -1.29
MATR3-223	ENST00000514402	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	7.01	□□□□□ -1.29
MATR3-223	ENST00000514402	DNAJC25-GNG10	A0A024R161	153 aa		7	□□□□□ -1.29
MATR3-223	ENST00000514402	SHISA3	A0PJX4	238 aa		7	□□□□□ -1.29
MATR3-223	ENST00000514402	WASH4P	A8MWX3	477 aa		7	□□□□□ -1.29
MATR3-223	ENST00000514402	SIGLEC6	O43699	453 aa		7	□□□□□ -1.29
MATR3-223	ENST00000514402	HPX	P02790	462 aa		7	□□□□□ -1.29
MATR3-223	ENST00000514402	GLI1	P08151	1106 aa		7	□□□□□ -1.29
MATR3-223	ENST00000514402	ENDOU	P21128	410 aa	Known RBP	7	□□□□□ -1.29
MATR3-223	ENST00000514402	GUCY2C	P25092	1073 aa		7	□□□□□ -1.29
MATR3-223	ENST00000514402	DUSP4	Q13115	394 aa		7	□□□□□ -1.29
MATR3-223	ENST00000514402	RALGPS1	Q5JS13	557 aa		7	□□□□□ -1.29
MATR3-223	ENST00000514402	PDZD8	Q8NEN9	1154 aa		7	□□□□□ -1.29
MATR3-223	ENST00000514402	MKRN2	Q9H000	416 aa	Known RBP	7	□□□□□ -1.29

Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms