RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 UQCRHP07919 91 aa9.24□□□□□ -0.93
LIMCH1-219ENST00000514096 ASNSP08243 561 aa9.24□□□□□ -0.93
LIMCH1-219ENST00000514096 CETPP11597 493 aa9.24□□□□□ -0.93
LIMCH1-219ENST00000514096 GSPT1P15170 499 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-219ENST00000514096 SP3Q02447 781 aa9.24□□□□□ -0.93
LIMCH1-219ENST00000514096 KIF22Q14807 665 aa9.24□□□□□ -0.93
LIMCH1-219ENST00000514096 LRRFIP1Q32MZ4 808 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-219ENST00000514096 CMTR1Q8N1G2 835 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-219ENST00000514096 MCOLN1Q9GZU1 580 aa9.24□□□□□ -0.93
LIMCH1-219ENST00000514096 EPB41L4AQ9HCS5 686 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-219ENST00000514096 PITPNM2Q9BZ72 1349 aa9.24□□□□□ -0.93
LIMCH1-219ENST00000514096 ERICH4A6NGS2 130 aa9.24□□□□□ -0.93
LIMCH1-219ENST00000514096 EEF2P13639 858 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-219ENST00000514096 HDAC1Q13547 482 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-219ENST00000514096 FAM83BQ5T0W9 1011 aa9.24□□□□□ -0.93
LIMCH1-219ENST00000514096 SPRYD3Q8NCJ5 442 aa9.24□□□□□ -0.93
LIMCH1-219ENST00000514096 HOOK2Q96ED9 719 aa9.24□□□□□ -0.93
LIMCH1-219ENST00000514096 P2RX7Q99572 595 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-219ENST00000514096 MYH2Q9UKX2 1941 aa9.24□□□□□ -0.93
LIMCH1-219ENST00000514096 GAKO14976 1311 aa9.24□□□□□ -0.93
LIMCH1-219ENST00000514096 SZT2Q5T011 3432 aa9.24□□□□□ -0.93
LIMCH1-219ENST00000514096 MANSC4A6NHS7 340 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-219ENST00000514096 ZNF213O14771 459 aa9.23□□□□□ -0.93
LIMCH1-219ENST00000514096 MCMDC2Q4G0Z9 681 aa9.23□□□□□ -0.93
LIMCH1-219ENST00000514096 NFXL1Q6ZNB6 911 aa9.23□□□□□ -0.93
LIMCH1-219ENST00000514096 SEMA3FQ13275 785 aa9.23□□□□□ -0.93
LIMCH1-219ENST00000514096 LDLRAD1Q5T700 205 aa9.23□□□□□ -0.93
LIMCH1-219ENST00000514096 SMC5Q8IY18 1101 aa9.23□□□□□ -0.93
LIMCH1-219ENST00000514096 MTMR14Q8NCE2 650 aa9.23□□□□□ -0.93
LIMCH1-219ENST00000514096 PPP1R13LQ8WUF5 828 aa9.23□□□□□ -0.93
LIMCH1-219ENST00000514096 UBA5Q9GZZ9 404 aa9.23□□□□□ -0.93
LIMCH1-219ENST00000514096 RPAP3Q9H6T3 665 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-219ENST00000514096 DICER1Q9UPY3 1922 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-219ENST00000514096 A0A1W2PRG0 241 aa9.23□□□□□ -0.93
LIMCH1-219ENST00000514096 PPARAQ07869 468 aa9.23□□□□□ -0.93
LIMCH1-219ENST00000514096 USH1GQ495M9 461 aa9.23□□□□□ -0.93
LIMCH1-219ENST00000514096 SLC9C1Q4G0N8 1177 aa9.23□□□□□ -0.93
LIMCH1-219ENST00000514096 IDI2Q9BXS1 227 aa9.23□□□□□ -0.93
LIMCH1-219ENST00000514096 DHX36Q9H2U1 1008 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-219ENST00000514096 TAF6LQ9Y6J9 622 aa9.23□□□□□ -0.93
LIMCH1-219ENST00000514096 SPDYE5A6NIY4 337 aa9.22□□□□□ -0.93
LIMCH1-219ENST00000514096 FKTNO75072 461 aa9.22□□□□□ -0.93
LIMCH1-219ENST00000514096 IBSPP21815 317 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-219ENST00000514096 PTH1RQ03431 593 aa9.22□□□□□ -0.93
LIMCH1-219ENST00000514096 ZNF513Q8N8E2 541 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-219ENST00000514096 GPHNQ9NQX3 736 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-219ENST00000514096 CTNND1O60716 968 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-219ENST00000514096 HSPD1P10809 573 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-219ENST00000514096 SHMT1P34896 483 aa9.22□□□□□ -0.93
LIMCH1-219ENST00000514096 PDE4BQ07343 736 aa9.22□□□□□ -0.93
LIMCH1-219ENST00000514096 RALYLQ86SE5 291 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-219ENST00000514096 FOXP4Q8IVH2 680 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-219ENST00000514096 CEP95Q96GE4 821 aa9.22□□□□□ -0.93
LIMCH1-219ENST00000514096 SLC3A2P08195 630 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-219ENST00000514096 FKBP1AP62942 108 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-219ENST00000514096 TRDNQ13061 729 aa9.22□□□□□ -0.93
LIMCH1-219ENST00000514096 UBE3CQ15386 1083 aa9.22□□□□□ -0.93
LIMCH1-219ENST00000514096 MFSD6Q6ZSS7 791 aa9.22□□□□□ -0.93
LIMCH1-219ENST00000514096 ASCC2Q9H1I8 757 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-219ENST00000514096 MYO5AQ9Y4I1 1855 aaKnown RBP9.21□□□□□ -0.93
LIMCH1-219ENST00000514096 TCRBV5S4A2TA0A5A2 114 aa9.21□□□□□ -0.93
LIMCH1-219ENST00000514096 PGK2P07205 417 aa9.21□□□□□ -0.93
LIMCH1-219ENST00000514096 CAP1Q01518 475 aa9.21□□□□□ -0.93
LIMCH1-219ENST00000514096 NSMFQ6X4W1 530 aa9.21□□□□□ -0.93
LIMCH1-219ENST00000514096 ARMCX6Q7L4S7 300 aa9.21□□□□□ -0.93
LIMCH1-219ENST00000514096 IVNS1ABPQ9Y6Y0 642 aa9.21□□□□□ -0.93
LIMCH1-219ENST00000514096 TTC41PQ6P2S7 1318 aa9.21□□□□□ -0.94
LIMCH1-219ENST00000514096 SALL1Q9NSC2 1324 aa9.21□□□□□ -0.94
LIMCH1-219ENST00000514096 TMEM232C9JQI7 657 aa9.21□□□□□ -0.94
LIMCH1-219ENST00000514096 FKBP1BP68106 108 aa9.21□□□□□ -0.94
LIMCH1-219ENST00000514096 TTC22Q5TAA0 569 aa9.21□□□□□ -0.94
LIMCH1-219ENST00000514096 ATG4CQ96DT6 458 aa9.21□□□□□ -0.94
LIMCH1-219ENST00000514096 ABHD8Q96I13 439 aa9.21□□□□□ -0.94
LIMCH1-219ENST00000514096 AS3MTQ9HBK9 375 aa9.21□□□□□ -0.94
LIMCH1-219ENST00000514096 PPP2R3BQ9Y5P8 575 aa9.21□□□□□ -0.94
LIMCH1-219ENST00000514096 SCN4AP35499 1836 aa9.21□□□□□ -0.94
LIMCH1-219ENST00000514096 PHF20L1A8MW92 1017 aa9.21□□□□□ -0.94
LIMCH1-219ENST00000514096 LETM1O95202 739 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-219ENST00000514096 KIF20AO95235 890 aa9.21□□□□□ -0.94
LIMCH1-219ENST00000514096 SLC1A4P43007 532 aa9.21□□□□□ -0.94
LIMCH1-219ENST00000514096 MTFR1Q15390 333 aa9.21□□□□□ -0.94
LIMCH1-219ENST00000514096 MS4A4AQ96JQ5 239 aa9.21□□□□□ -0.94
LIMCH1-219ENST00000514096 PORCNQ9H237 461 aa9.21□□□□□ -0.94
LIMCH1-219ENST00000514096 GABRQQ9UN88 632 aa9.21□□□□□ -0.94
LIMCH1-219ENST00000514096 PTCH2Q9Y6C5 1203 aa9.21□□□□□ -0.94
LIMCH1-219ENST00000514096 SSC5DA1L4H1 1573 aa9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 WDR90Q96KV7 1748 aa9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 BACE1P56817 501 aa9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 PRKCZQ05513 592 aa9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 STK3Q13188 491 aa9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 Q3C1V9 767 aa9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 FOXD4L6Q3SYB3 417 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 C12orf60Q5U649 245 aa9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 USP17L2Q6R6M4 530 aa9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 FOXD4L3Q6VB84 417 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 DPP9Q86TI2 863 aa9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 NKX2-3Q8TAU0 364 aa9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 VTI1AQ96AJ9 217 aa9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 UBAC1Q9BSL1 405 aa9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 RNF208Q9H0X6 261 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms