RNA–Protein interactions for RNA: ENST00000513984.5

VCAN-211, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-211ENST00000513984 RTKN2Q8IZC4 609 aa17.2■□□□□ 0.34
VCAN-211ENST00000513984 TNFRSF25Q93038 417 aa17.2■□□□□ 0.34
VCAN-211ENST00000513984 PSMD1Q99460 953 aa17.2■□□□□ 0.34
VCAN-211ENST00000513984 LZTS2Q9BRK4 669 aa17.2■□□□□ 0.34
VCAN-211ENST00000513984 EHD4Q9H223 541 aa17.2■□□□□ 0.34
VCAN-211ENST00000513984 BRMS1Q9HCU9 246 aa17.2■□□□□ 0.34
VCAN-211ENST00000513984 SERPINA10Q9UK55 444 aa17.2■□□□□ 0.34
VCAN-211ENST00000513984 CUTAO60888 179 aa17.19■□□□□ 0.34
VCAN-211ENST00000513984 NPM3O75607 178 aaKnown RBP17.19■□□□□ 0.34
VCAN-211ENST00000513984 KCNA3P22001 575 aa17.19■□□□□ 0.34
VCAN-211ENST00000513984 SASS6Q6UVJ0 657 aa17.19■□□□□ 0.34
VCAN-211ENST00000513984 FAM200AQ8TCP9 573 aa17.19■□□□□ 0.34
VCAN-211ENST00000513984 IDI2Q9BXS1 227 aa17.19■□□□□ 0.34
VCAN-211ENST00000513984 SH3GLB2Q9NR46 395 aa17.19■□□□□ 0.34
VCAN-211ENST00000513984 IGKV6D-41A0A0C4DH26 115 aa17.19■□□□□ 0.34
VCAN-211ENST00000513984 YDJCA8MPS7 323 aa17.19■□□□□ 0.34
VCAN-211ENST00000513984 HLA-DOAP06340 250 aa17.19■□□□□ 0.34
VCAN-211ENST00000513984 PFKFB1P16118 471 aa17.19■□□□□ 0.34
VCAN-211ENST00000513984 NFIAQ12857 509 aa17.19■□□□□ 0.34
VCAN-211ENST00000513984 HPSEQ9Y251 543 aa17.19■□□□□ 0.34
VCAN-211ENST00000513984 DPEP1P16444 411 aa17.18■□□□□ 0.34
VCAN-211ENST00000513984 SLC35G1Q2M3R5 365 aa17.18■□□□□ 0.34
VCAN-211ENST00000513984 RESP18Q5W5W9 173 aa17.18■□□□□ 0.34
VCAN-211ENST00000513984 SHC4Q6S5L8 630 aa17.18■□□□□ 0.34
VCAN-211ENST00000513984 FAM177A1Q8N128 213 aaPredicted RBP17.18■□□□□ 0.34
VCAN-211ENST00000513984 TRIM44Q96DX7 344 aaPredicted RBP17.18■□□□□ 0.34
VCAN-211ENST00000513984 SPZ1Q9BXG8 430 aa17.18■□□□□ 0.34
VCAN-211ENST00000513984 CABP5Q9NP86 173 aa17.18■□□□□ 0.34
VCAN-211ENST00000513984 MTMR4Q9NYA4 1195 aa17.18■□□□□ 0.34
VCAN-211ENST00000513984 CEP131Q9UPN4 1083 aa17.18■□□□□ 0.34
VCAN-211ENST00000513984 FER1L6Q2WGJ9 1857 aa17.18■□□□□ 0.34
VCAN-211ENST00000513984 CYTH3O43739 400 aa17.17■□□□□ 0.34
VCAN-211ENST00000513984 CAVIN2O95810 425 aa17.17■□□□□ 0.34
VCAN-211ENST00000513984 AKR1B1P15121 316 aa17.17■□□□□ 0.34
VCAN-211ENST00000513984 SHMT1P34896 483 aa17.17■□□□□ 0.34
VCAN-211ENST00000513984 ANO6Q4KMQ2 910 aa17.17■□□□□ 0.34
VCAN-211ENST00000513984 KRI1Q8N9T8 703 aaKnown RBP17.17■□□□□ 0.34
VCAN-211ENST00000513984 DHX36Q9H2U1 1008 aaKnown RBP17.17■□□□□ 0.34
VCAN-211ENST00000513984 PCDHB6Q9Y5E3 794 aa17.17■□□□□ 0.34
VCAN-211ENST00000513984 PCDHAC2Q9Y5I4 1007 aa17.17■□□□□ 0.34
VCAN-211ENST00000513984 COL4A5P29400 1685 aa17.17■□□□□ 0.34
VCAN-211ENST00000513984 ZNF202O95125 648 aa17.17■□□□□ 0.34
VCAN-211ENST00000513984 VEGFAP15692 232 aaPredicted RBP17.17■□□□□ 0.34
VCAN-211ENST00000513984 PTPREP23469 700 aa17.17■□□□□ 0.34
VCAN-211ENST00000513984 CALML3P27482 149 aa17.17■□□□□ 0.34
VCAN-211ENST00000513984 SMARCA1P28370 1054 aa17.17■□□□□ 0.34
VCAN-211ENST00000513984 EARS2Q5JPH6 523 aaKnown RBP17.17■□□□□ 0.34
VCAN-211ENST00000513984 TIGD1Q96MW7 591 aa17.17■□□□□ 0.34
VCAN-211ENST00000513984 COL2A1P02458 1487 aaPredicted RBP17.16■□□□□ 0.34
VCAN-211ENST00000513984 ARFGEF1Q9Y6D6 1849 aa17.16■□□□□ 0.34
VCAN-211ENST00000513984 FAM205CA6NFA0 338 aa17.16■□□□□ 0.34
VCAN-211ENST00000513984 PARP1P09874 1014 aaKnown RBP17.16■□□□□ 0.34
VCAN-211ENST00000513984 NLRP5P59047 1200 aa17.16■□□□□ 0.34
VCAN-211ENST00000513984 CCDC125Q86Z20 511 aa17.16■□□□□ 0.34
VCAN-211ENST00000513984 CLIC6Q96NY7 704 aa17.16■□□□□ 0.34
VCAN-211ENST00000513984 VPS33BQ9H267 617 aa17.16■□□□□ 0.34
VCAN-211ENST00000513984 FAM198AQ9UFP1 575 aa17.16■□□□□ 0.34
VCAN-211ENST00000513984 FBXO2Q9UK22 296 aaPredicted RBP17.16■□□□□ 0.34
VCAN-211ENST00000513984 NOL7Q9UMY1 257 aaKnown RBP17.16■□□□□ 0.34
VCAN-211ENST00000513984 TRIM75PA6NK02 468 aa17.15■□□□□ 0.34
VCAN-211ENST00000513984 KLRF2D3W0D1 207 aa17.15■□□□□ 0.34
VCAN-211ENST00000513984 RBM5P52756 815 aaKnown RBP eCLIP17.15■□□□□ 0.34
VCAN-211ENST00000513984 ZFPM1Q8IX07 1006 aa17.15■□□□□ 0.34
VCAN-211ENST00000513984 ZNF579Q8NAF0 562 aaKnown RBP17.15■□□□□ 0.34
VCAN-211ENST00000513984 SDF4Q9BRK5 362 aa17.15■□□□□ 0.34
VCAN-211ENST00000513984 BMP15O95972 392 aa17.14■□□□□ 0.34
VCAN-211ENST00000513984 SYKP43405 635 aa17.14■□□□□ 0.34
VCAN-211ENST00000513984 STX1AQ16623 288 aa17.14■□□□□ 0.34
VCAN-211ENST00000513984 HS1BP3Q53T59 392 aa17.14■□□□□ 0.34
VCAN-211ENST00000513984 PIBF1Q8WXW3 757 aa17.14■□□□□ 0.34
VCAN-211ENST00000513984 USP25Q9UHP3 1055 aa17.14■□□□□ 0.34
VCAN-211ENST00000513984 SRPRBQ9Y5M8 271 aaKnown RBP17.14■□□□□ 0.34
VCAN-211ENST00000513984 TTLL1O95922 423 aa17.14■□□□□ 0.33
VCAN-211ENST00000513984 PDHBP11177 359 aa17.14■□□□□ 0.33
VCAN-211ENST00000513984 TRAPPC10P48553 1259 aa17.14■□□□□ 0.33
VCAN-211ENST00000513984 SOGA3Q5TF21 947 aa17.14■□□□□ 0.33
VCAN-211ENST00000513984 RASGRP2Q7LDG7 609 aa17.14■□□□□ 0.33
VCAN-211ENST00000513984 FAM43AQ8N2R8 423 aa17.14■□□□□ 0.33
VCAN-211ENST00000513984 DAGLBQ8NCG7 672 aa17.14■□□□□ 0.33
VCAN-211ENST00000513984 CCDC148Q8NFR7 591 aa17.14■□□□□ 0.33
VCAN-211ENST00000513984 GPKOWQ92917 476 aaPredicted RBP eCLIP17.14■□□□□ 0.33
VCAN-211ENST00000513984 CCDC17Q96LX7 622 aa17.14■□□□□ 0.33
VCAN-211ENST00000513984 DNAJC18Q9H819 358 aa17.14■□□□□ 0.33
VCAN-211ENST00000513984 CBX8Q9HC52 389 aa17.14■□□□□ 0.33
VCAN-211ENST00000513984 MTMR7Q9Y216 660 aa17.14■□□□□ 0.33
VCAN-211ENST00000513984 ATRNL1Q5VV63 1379 aa17.13■□□□□ 0.33
VCAN-211ENST00000513984 GOLGA8HP0CJ92 632 aa17.13■□□□□ 0.33
VCAN-211ENST00000513984 SNHG28P0DPA3 235 aa17.13■□□□□ 0.33
VCAN-211ENST00000513984 CACNB3P54284 484 aa17.13■□□□□ 0.33
VCAN-211ENST00000513984 CFAP100Q494V2 611 aa17.13■□□□□ 0.33
VCAN-211ENST00000513984 PPP4R3BQ5MIZ7 849 aa17.13■□□□□ 0.33
VCAN-211ENST00000513984 WWC2Q6AWC2 1192 aa17.13■□□□□ 0.33
VCAN-211ENST00000513984 GALNT17Q6IS24 598 aa17.13■□□□□ 0.33
VCAN-211ENST00000513984 RSBN1LQ6PCB5 846 aaPredicted RBP17.13■□□□□ 0.33
VCAN-211ENST00000513984 USP17L2Q6R6M4 530 aa17.13■□□□□ 0.33
VCAN-211ENST00000513984 BLIDQ8IZY5 108 aa17.13■□□□□ 0.33
VCAN-211ENST00000513984 DNAJC25Q9H1X3 360 aa17.13■□□□□ 0.33
VCAN-211ENST00000513984 BARHL2Q9NY43 387 aa17.13■□□□□ 0.33
VCAN-211ENST00000513984 KIAA1468Q9P260 1216 aa17.13■□□□□ 0.33
VCAN-211ENST00000513984 PI4KBQ9UBF8 816 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms