RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 GUCY1A2P33402 732 aa13.39□□□□□ -0.27
DDX41-216ENST00000513562 PRAMEF19Q5SWL8 479 aa13.39□□□□□ -0.27
DDX41-216ENST00000513562 ABRAQ8N0Z2 381 aa13.39□□□□□ -0.27
DDX41-216ENST00000513562 ZNF576Q9H609 170 aa13.39□□□□□ -0.27
DDX41-216ENST00000513562 SLC5A4Q9NY91 659 aa13.39□□□□□ -0.27
DDX41-216ENST00000513562 ROBO3Q96MS0 1386 aa13.38□□□□□ -0.27
DDX41-216ENST00000513562 CT47B1P0C2W7 299 aaPredicted RBP13.38□□□□□ -0.27
DDX41-216ENST00000513562 CYP7A1P22680 504 aa13.38□□□□□ -0.27
DDX41-216ENST00000513562 SHMT1P34896 483 aa13.38□□□□□ -0.27
DDX41-216ENST00000513562 PLA2G5P39877 138 aa13.38□□□□□ -0.27
DDX41-216ENST00000513562 FPGSQ05932 587 aa13.38□□□□□ -0.27
DDX41-216ENST00000513562 G3BP1Q13283 466 aaKnown RBP eCLIP13.38□□□□□ -0.27
DDX41-216ENST00000513562 COG2Q14746 738 aa13.38□□□□□ -0.27
DDX41-216ENST00000513562 CCDC158Q5M9N0 1113 aa13.38□□□□□ -0.27
DDX41-216ENST00000513562 CERS3Q8IU89 383 aa13.38□□□□□ -0.27
DDX41-216ENST00000513562 ATXN2LQ8WWM7 1075 aaKnown RBP13.38□□□□□ -0.27
DDX41-216ENST00000513562 TIFAQ96CG3 184 aa13.38□□□□□ -0.27
DDX41-216ENST00000513562 MAML3Q96JK9 1138 aa13.38□□□□□ -0.27
DDX41-216ENST00000513562 ZNF512BQ96KM6 892 aaPredicted RBP13.38□□□□□ -0.27
DDX41-216ENST00000513562 DBNDD2Q9BQY9 259 aa13.38□□□□□ -0.27
DDX41-216ENST00000513562 MROH8Q9H579 483 aa13.38□□□□□ -0.27
DDX41-216ENST00000513562 CABP5Q9NP86 173 aa13.38□□□□□ -0.27
DDX41-216ENST00000513562 GPR108Q9NPR9 543 aa13.38□□□□□ -0.27
DDX41-216ENST00000513562 XPNPEP3Q9NQH7 507 aa13.38□□□□□ -0.27
DDX41-216ENST00000513562 PIH1D3Q9NQM4 214 aaKnown RBP13.38□□□□□ -0.27
DDX41-216ENST00000513562 HOXC10Q9NYD6 342 aa13.38□□□□□ -0.27
DDX41-216ENST00000513562 NRBP1Q9UHY1 535 aa13.38□□□□□ -0.27
DDX41-216ENST00000513562 FOCADQ5VW36 1801 aa13.37□□□□□ -0.27
DDX41-216ENST00000513562 PNMA6EA0A0J9YXQ4 647 aa13.37□□□□□ -0.27
DDX41-216ENST00000513562 A0A1W2PQ45 241 aaPredicted RBP13.37□□□□□ -0.27
DDX41-216ENST00000513562 A0A1W2PQY0 241 aa13.37□□□□□ -0.27
DDX41-216ENST00000513562 PQBP1O60828 265 aaKnown RBP13.37□□□□□ -0.27
DDX41-216ENST00000513562 RARBP10826 455 aa13.37□□□□□ -0.27
DDX41-216ENST00000513562 ZAP70P43403 619 aa13.37□□□□□ -0.27
DDX41-216ENST00000513562 USP5P45974 858 aa13.37□□□□□ -0.27
DDX41-216ENST00000513562 TNNI3KQ59H18 835 aa13.37□□□□□ -0.27
DDX41-216ENST00000513562 ANKRD33Q7Z3H0 272 aa13.37□□□□□ -0.27
DDX41-216ENST00000513562 TTC6Q86TZ1 520 aa13.37□□□□□ -0.27
DDX41-216ENST00000513562 TRMT2AQ8IZ69 625 aaKnown RBP13.37□□□□□ -0.27
DDX41-216ENST00000513562 MB21D1Q8N884 522 aa13.37□□□□□ -0.27
DDX41-216ENST00000513562 MIGA1Q8NAN2 632 aa13.37□□□□□ -0.27
DDX41-216ENST00000513562 FPGT-TNNI3KV9GXZ4 949 aa13.37□□□□□ -0.27
DDX41-216ENST00000513562 XIRP2A4UGR9 3374 aa13.36□□□□□ -0.27
DDX41-216ENST00000513562 A0A1W2PRG0 241 aa13.36□□□□□ -0.27
DDX41-216ENST00000513562 PLCD1P51178 756 aa13.36□□□□□ -0.27
DDX41-216ENST00000513562 FAAP100Q0VG06 881 aa13.36□□□□□ -0.27
DDX41-216ENST00000513562 AKNAD1Q5T1N1 836 aa13.36□□□□□ -0.27
DDX41-216ENST00000513562 RNF180Q86T96 592 aa13.36□□□□□ -0.27
DDX41-216ENST00000513562 ARHGAP45Q92619 1136 aa13.36□□□□□ -0.27
DDX41-216ENST00000513562 CDCA7LQ96GN5 454 aa13.36□□□□□ -0.27
DDX41-216ENST00000513562 TOX2Q96NM4 488 aa13.36□□□□□ -0.27
DDX41-216ENST00000513562 ASB2Q96Q27 587 aa13.36□□□□□ -0.27
DDX41-216ENST00000513562 TANGO6Q9C0B7 1094 aa13.36□□□□□ -0.27
DDX41-216ENST00000513562 TMEM39AQ9NV64 488 aa13.36□□□□□ -0.27
DDX41-216ENST00000513562 THEGQ9P2T0 379 aa13.36□□□□□ -0.27
DDX41-216ENST00000513562 A0A0G2JMZ2 1700 aa13.36□□□□□ -0.27
DDX41-216ENST00000513562 PGK1P00558 417 aa13.35□□□□□ -0.27
DDX41-216ENST00000513562 GNAI2P04899 355 aa13.35□□□□□ -0.27
DDX41-216ENST00000513562 GABPAQ06546 454 aa13.35□□□□□ -0.27
DDX41-216ENST00000513562 SEPT2Q15019 361 aa13.35□□□□□ -0.27
DDX41-216ENST00000513562 NCAPG2Q86XI2 1143 aa13.35□□□□□ -0.27
DDX41-216ENST00000513562 ADAMTS19Q8TE59 1207 aa13.35□□□□□ -0.27
DDX41-216ENST00000513562 GAS2L1Q99501 681 aaPredicted RBP13.35□□□□□ -0.27
DDX41-216ENST00000513562 CHD9Q3L8U1 2897 aa13.35□□□□□ -0.27
DDX41-216ENST00000513562 CDK5RAP2Q96SN8 1893 aa13.34□□□□□ -0.27
DDX41-216ENST00000513562 ADAMTS4O75173 837 aa13.34□□□□□ -0.27
DDX41-216ENST00000513562 IDH1O75874 414 aaKnown RBP13.34□□□□□ -0.27
DDX41-216ENST00000513562 FCER1AP12319 257 aa13.34□□□□□ -0.27
DDX41-216ENST00000513562 DSG3P32926 999 aa13.34□□□□□ -0.27
DDX41-216ENST00000513562 KIAA1755Q5JYT7 1200 aa13.34□□□□□ -0.27
DDX41-216ENST00000513562 RASIP1Q5U651 963 aa13.34□□□□□ -0.27
DDX41-216ENST00000513562 SLC44A5Q8NCS7 719 aa13.34□□□□□ -0.27
DDX41-216ENST00000513562 FAM122AQ96E09 287 aa13.34□□□□□ -0.27
DDX41-216ENST00000513562 UHRF1Q96T88 793 aaPredicted RBP13.34□□□□□ -0.27
DDX41-216ENST00000513562 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.34□□□□□ -0.274e-9■■□□□ 13.8
DDX41-216ENST00000513562 PBX4Q9BYU1 374 aa13.34□□□□□ -0.27
DDX41-216ENST00000513562 TBX21Q9UL17 535 aa13.34□□□□□ -0.27
DDX41-216ENST00000513562 TIMP1P01033 207 aa13.33□□□□□ -0.28
DDX41-216ENST00000513562 ZNF865P0CJ78 1059 aaPredicted RBP13.33□□□□□ -0.28
DDX41-216ENST00000513562 PBX2P40425 430 aa13.33□□□□□ -0.28
DDX41-216ENST00000513562 MRPS5P82675 430 aaKnown RBP13.33□□□□□ -0.28
DDX41-216ENST00000513562 PLS1Q14651 629 aa13.33□□□□□ -0.28
DDX41-216ENST00000513562 TMED8Q6PL24 325 aaPredicted RBP13.33□□□□□ -0.28
DDX41-216ENST00000513562 MAGEB6Q8N7X4 407 aa13.33□□□□□ -0.28
DDX41-216ENST00000513562 PPM1EQ8WY54 764 aa13.33□□□□□ -0.28
DDX41-216ENST00000513562 ATG4CQ96DT6 458 aa13.33□□□□□ -0.28
DDX41-216ENST00000513562 TINF2Q9BSI4 451 aa13.33□□□□□ -0.28
DDX41-216ENST00000513562 TSEN34Q9BSV6 310 aaKnown RBP13.33□□□□□ -0.28
DDX41-216ENST00000513562 PRDM12Q9H4Q4 367 aa13.33□□□□□ -0.28
DDX41-216ENST00000513562 DBNLQ9UJU6 430 aaKnown RBP13.33□□□□□ -0.28
DDX41-216ENST00000513562 DIS3Q9Y2L1 958 aaKnown RBP13.33□□□□□ -0.28
DDX41-216ENST00000513562 DCDC2CA8MYV0 355 aa13.32□□□□□ -0.28
DDX41-216ENST00000513562 FLOT1O75955 427 aa13.32□□□□□ -0.28
DDX41-216ENST00000513562 SLC25A27O95847 323 aa13.32□□□□□ -0.28
DDX41-216ENST00000513562 AKR1A1P14550 325 aa13.32□□□□□ -0.28
DDX41-216ENST00000513562 TAL1P17542 331 aaPredicted RBP13.32□□□□□ -0.28
DDX41-216ENST00000513562 ACLYP53396 1101 aa13.32□□□□□ -0.28
DDX41-216ENST00000513562 RARSP54136 660 aaKnown RBP13.32□□□□□ -0.28
DDX41-216ENST00000513562 MAP3K12Q12852 859 aa13.32□□□□□ -0.28
DDX41-216ENST00000513562 POLA2Q14181 598 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms