RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 SLC39A14Q15043 492 aa12.63□□□□□ -0.39
SH3RF1-203ENST00000508685 ELOA2Q8IYF1 753 aaPredicted RBP12.63□□□□□ -0.39
SH3RF1-203ENST00000508685 TEX11Q8IYF3 940 aa12.63□□□□□ -0.39
SH3RF1-203ENST00000508685 TRIM22Q8IYM9 498 aa12.63□□□□□ -0.39
SH3RF1-203ENST00000508685 CCAR2Q8N163 923 aaKnown RBP12.63□□□□□ -0.39
SH3RF1-203ENST00000508685 CDK5RAP2Q96SN8 1893 aa12.63□□□□□ -0.39
SH3RF1-203ENST00000508685 ZNF219Q9P2Y4 722 aaPredicted RBP12.63□□□□□ -0.39
SH3RF1-203ENST00000508685 KCNJ14Q9UNX9 436 aa12.63□□□□□ -0.39
SH3RF1-203ENST00000508685 ROBO3Q96MS0 1386 aa12.63□□□□□ -0.39
SH3RF1-203ENST00000508685 DLEC1Q9Y238 1755 aa12.63□□□□□ -0.39
SH3RF1-203ENST00000508685 FLT1P17948 1338 aa12.63□□□□□ -0.39
SH3RF1-203ENST00000508685 A0A1B0GVL5 298 aa12.62□□□□□ -0.39
SH3RF1-203ENST00000508685 CBFA2T2O43439 604 aa12.62□□□□□ -0.39
SH3RF1-203ENST00000508685 ZNF202O95125 648 aa12.62□□□□□ -0.39
SH3RF1-203ENST00000508685 GNL2Q13823 731 aaKnown RBP12.62□□□□□ -0.39
SH3RF1-203ENST00000508685 RCSD1Q6JBY9 416 aa12.62□□□□□ -0.39
SH3RF1-203ENST00000508685 GAKO14976 1311 aa12.62□□□□□ -0.39
SH3RF1-203ENST00000508685 FAM237AA0A1B0GTK4 181 aa12.62□□□□□ -0.39
SH3RF1-203ENST00000508685 DEXIO95424 95 aa12.62□□□□□ -0.39
SH3RF1-203ENST00000508685 TFAP4Q01664 338 aa12.62□□□□□ -0.39
SH3RF1-203ENST00000508685 DMTNQ08495 405 aa12.62□□□□□ -0.39
SH3RF1-203ENST00000508685 FILIP1Q7Z7B0 1213 aa12.62□□□□□ -0.39
SH3RF1-203ENST00000508685 ERO1AQ96HE7 468 aa12.62□□□□□ -0.39
SH3RF1-203ENST00000508685 IL17RBQ9NRM6 502 aa12.62□□□□□ -0.39
SH3RF1-203ENST00000508685 DAGLAQ9Y4D2 1042 aa12.62□□□□□ -0.39
SH3RF1-203ENST00000508685 DDX60LQ5H9U9 1706 aaKnown RBP12.61□□□□□ -0.39
SH3RF1-203ENST00000508685 H0YIN7 160 aa12.61□□□□□ -0.39
SH3RF1-203ENST00000508685 MMP1P03956 469 aa12.61□□□□□ -0.39
SH3RF1-203ENST00000508685 U2AF2P26368 475 aaKnown RBP eCLIP12.61□□□□□ -0.399e-8■■■■■ 32.2
SH3RF1-203ENST00000508685 FUT2Q10981 343 aa12.61□□□□□ -0.39
SH3RF1-203ENST00000508685 AMOTL1Q8IY63 956 aa12.61□□□□□ -0.39
SH3RF1-203ENST00000508685 WASF1Q92558 559 aa12.61□□□□□ -0.39
SH3RF1-203ENST00000508685 SHISA4Q96DD7 197 aa12.61□□□□□ -0.39
SH3RF1-203ENST00000508685 FAM163AQ96GL9 167 aaPredicted RBP12.61□□□□□ -0.39
SH3RF1-203ENST00000508685 FHDC1Q9C0D6 1143 aaPredicted RBP12.61□□□□□ -0.39
SH3RF1-203ENST00000508685 TMX4Q9H1E5 349 aaPredicted RBP12.61□□□□□ -0.39
SH3RF1-203ENST00000508685 DBNDD1Q9H9R9 158 aa12.61□□□□□ -0.39
SH3RF1-203ENST00000508685 MKNK2Q9HBH9 465 aa12.61□□□□□ -0.39
SH3RF1-203ENST00000508685 KCNQ5Q9NR82 932 aa12.61□□□□□ -0.39
SH3RF1-203ENST00000508685 USP17L3A6NCW0 530 aa12.61□□□□□ -0.39
SH3RF1-203ENST00000508685 USP17L4A6NCW7 530 aa12.61□□□□□ -0.39
SH3RF1-203ENST00000508685 BTBD18B2RXH4 712 aa12.61□□□□□ -0.39
SH3RF1-203ENST00000508685 SFPQP23246 707 aaKnown RBP eCLIP12.61□□□□□ -0.39
SH3RF1-203ENST00000508685 AXDND1Q5T1B0 1012 aaPredicted RBP12.61□□□□□ -0.39
SH3RF1-203ENST00000508685 USP17L1Q7RTZ2 530 aa12.61□□□□□ -0.39
SH3RF1-203ENST00000508685 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.61□□□□□ -0.39
SH3RF1-203ENST00000508685 HOOK1Q9UJC3 728 aaKnown RBP12.61□□□□□ -0.39
SH3RF1-203ENST00000508685 TUBE1Q9UJT0 475 aa12.61□□□□□ -0.39
SH3RF1-203ENST00000508685 SLX4Q8IY92 1834 aa12.6□□□□□ -0.39
SH3RF1-203ENST00000508685 ADAMTSL1Q8N6G6 1762 aa12.6□□□□□ -0.39
SH3RF1-203ENST00000508685 DDAH1O94760 285 aa12.6□□□□□ -0.39
SH3RF1-203ENST00000508685 SCNN1DP51172 638 aa12.6□□□□□ -0.39
SH3RF1-203ENST00000508685 PKN1Q16512 942 aa12.6□□□□□ -0.39
SH3RF1-203ENST00000508685 SLF2Q8IX21 1173 aa12.6□□□□□ -0.39
SH3RF1-203ENST00000508685 DIS3L2Q8IYB7 885 aaKnown RBP12.6□□□□□ -0.39
SH3RF1-203ENST00000508685 RNF26Q9BY78 433 aaPredicted RBP12.6□□□□□ -0.39
SH3RF1-203ENST00000508685 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.6□□□□□ -0.39
SH3RF1-203ENST00000508685 TTF2Q9UNY4 1162 aaKnown RBP12.6□□□□□ -0.39
SH3RF1-203ENST00000508685 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 G3V3G9 751 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 CALM1P0DP23 149 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 CALM2P0DP24 149 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 CALM3P0DP25 149 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 PFKFB1P16118 471 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 ZSCAN20P17040 1043 aaPredicted RBP12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 RASA1P20936 1047 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 SYKP43405 635 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 CBX1P83916 185 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 NR5A1Q13285 461 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 PICALMQ13492 652 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 PPP2R5BQ15173 497 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 DCAF8Q5TAQ9 597 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 TMTC3Q6ZXV5 915 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 CERS3Q8IU89 383 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 NOSTRINQ8IVI9 506 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 ZNF397Q8NF99 534 aaPredicted RBP12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 SYT17Q9BSW7 474 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 RBM28Q9NW13 759 aaKnown RBP12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 VPS54Q9P1Q0 977 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 PRDM4Q9UKN5 801 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 V9GY48 417 aaPredicted RBP12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 CUTAO60888 179 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 SMC2O95347 1197 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 SLU7O95391 586 aaKnown RBP12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 TSPY3P0CV98 308 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 TSPY8P0CW00 308 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 PLCG2P16885 1265 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 MARCKSP29966 332 aaPredicted RBP12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 DPCR1Q3MIW9 517 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 STYK1Q6J9G0 422 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 SRBD1Q8N5C6 995 aaKnown RBP12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 CTCFLQ8NI51 663 aaPredicted RBP12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 OXER1Q8TDS5 423 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 ZNF592Q92610 1267 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 XPO4Q9C0E2 1151 aaKnown RBP12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 HPSEQ9Y251 543 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 SNED1Q8TER0 1413 aa12.59□□□□□ -0.39
SH3RF1-203ENST00000508685 CNTNAP5Q8WYK1 1306 aa12.58□□□□□ -0.39
SH3RF1-203ENST00000508685 BAZ2BQ9UIF8 2168 aaKnown RBP12.58□□□□□ -0.4
SH3RF1-203ENST00000508685 MYH6P13533 1939 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms