RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 CYP2D6P10635 497 aa17.29■□□□□ 0.36
HMGCS1-203ENST00000507004 AAMPQ13685 434 aa17.29■□□□□ 0.36
HMGCS1-203ENST00000507004 MFSD14CQ5VZR4 134 aa17.29■□□□□ 0.36
HMGCS1-203ENST00000507004 STRBPQ96SI9 672 aaKnown RBP17.29■□□□□ 0.36
HMGCS1-203ENST00000507004 TANGO6Q9C0B7 1094 aa17.29■□□□□ 0.36
HMGCS1-203ENST00000507004 PUS7LQ9H0K6 701 aaKnown RBP17.29■□□□□ 0.36
HMGCS1-203ENST00000507004 VCPKMTQ9H867 229 aa17.29■□□□□ 0.36
HMGCS1-203ENST00000507004 SLC5A4Q9NY91 659 aa17.29■□□□□ 0.36
HMGCS1-203ENST00000507004 MYH8P13535 1937 aa17.28■□□□□ 0.36
HMGCS1-203ENST00000507004 A0A1W2PRG0 241 aa17.28■□□□□ 0.36
HMGCS1-203ENST00000507004 MSCO60682 206 aa17.28■□□□□ 0.36
HMGCS1-203ENST00000507004 CNMDO75829 334 aa17.28■□□□□ 0.36
HMGCS1-203ENST00000507004 PRKAR2AP13861 404 aaKnown RBP17.28■□□□□ 0.36
HMGCS1-203ENST00000507004 AKR1B1P15121 316 aa17.28■□□□□ 0.36
HMGCS1-203ENST00000507004 PTPREP23469 700 aa17.28■□□□□ 0.36
HMGCS1-203ENST00000507004 WDR78Q5VTH9 848 aa17.28■□□□□ 0.36
HMGCS1-203ENST00000507004 CTR9Q6PD62 1173 aa17.28■□□□□ 0.36
HMGCS1-203ENST00000507004 SLC44A5Q8NCS7 719 aa17.28■□□□□ 0.36
HMGCS1-203ENST00000507004 DYNLL2Q96FJ2 89 aa17.28■□□□□ 0.36
HMGCS1-203ENST00000507004 NBPF3Q9H094 633 aa17.28■□□□□ 0.36
HMGCS1-203ENST00000507004 GOPCQ9HD26 462 aa17.28■□□□□ 0.36
HMGCS1-203ENST00000507004 OGDHLQ9ULD0 1010 aa17.28■□□□□ 0.36
HMGCS1-203ENST00000507004 EVI5O60447 810 aa17.27■□□□□ 0.36
HMGCS1-203ENST00000507004 DSG3P32926 999 aa17.27■□□□□ 0.36
HMGCS1-203ENST00000507004 RRP1P56182 461 aaKnown RBP17.27■□□□□ 0.36
HMGCS1-203ENST00000507004 GRB14Q14449 540 aa17.27■□□□□ 0.36
HMGCS1-203ENST00000507004 NACAP1Q9BZK3 213 aa17.27■□□□□ 0.36
HMGCS1-203ENST00000507004 MROH8Q9H579 483 aa17.27■□□□□ 0.36
HMGCS1-203ENST00000507004 PLXNB2O15031 1838 aa17.26■□□□□ 0.35
HMGCS1-203ENST00000507004 FLOT1O75955 427 aa17.26■□□□□ 0.35
HMGCS1-203ENST00000507004 COPB2P35606 906 aa17.26■□□□□ 0.35
HMGCS1-203ENST00000507004 TICAM2Q86XR7 235 aa17.26■□□□□ 0.35
HMGCS1-203ENST00000507004 ABRAQ8N0Z2 381 aa17.26■□□□□ 0.35
HMGCS1-203ENST00000507004 PAWRQ96IZ0 340 aaKnown RBP17.26■□□□□ 0.35
HMGCS1-203ENST00000507004 SPATC1LQ9H0A9 340 aa17.26■□□□□ 0.35
HMGCS1-203ENST00000507004 MKNK2Q9HBH9 465 aa17.26■□□□□ 0.35
HMGCS1-203ENST00000507004 BTBD7Q9P203 1132 aa17.26■□□□□ 0.35
HMGCS1-203ENST00000507004 SYNPO2Q9UMS6 1093 aa17.26■□□□□ 0.35
HMGCS1-203ENST00000507004 BRCA2P51587 3418 aa17.25■□□□□ 0.35
HMGCS1-203ENST00000507004 BAZ2AQ9UIF9 1905 aaKnown RBP17.25■□□□□ 0.35
HMGCS1-203ENST00000507004 GPAA1O43292 621 aa17.25■□□□□ 0.35
HMGCS1-203ENST00000507004 SLC25A27O95847 323 aa17.25■□□□□ 0.35
HMGCS1-203ENST00000507004 ATP2B2Q01814 1243 aa17.25■□□□□ 0.35
HMGCS1-203ENST00000507004 SLFNL1Q499Z3 407 aa17.25■□□□□ 0.35
HMGCS1-203ENST00000507004 POTEEQ6S8J3 1075 aa17.25■□□□□ 0.35
HMGCS1-203ENST00000507004 COLQQ9Y215 455 aaPredicted RBP17.25■□□□□ 0.35
HMGCS1-203ENST00000507004 PCDHB15Q9Y5E8 787 aa17.25■□□□□ 0.35
HMGCS1-203ENST00000507004 ROBO3Q96MS0 1386 aa17.25■□□□□ 0.35
HMGCS1-203ENST00000507004 A0A1W2PPC1 479 aa17.24■□□□□ 0.35
HMGCS1-203ENST00000507004 GSG1L2A8MUP6 293 aa17.24■□□□□ 0.35
HMGCS1-203ENST00000507004 PEX10O60683 326 aa17.24■□□□□ 0.35
HMGCS1-203ENST00000507004 SLC3A2P08195 630 aaKnown RBP17.24■□□□□ 0.35
HMGCS1-203ENST00000507004 EEF2P13639 858 aaKnown RBP17.24■□□□□ 0.35
HMGCS1-203ENST00000507004 TDO2P48775 406 aa17.24■□□□□ 0.35
HMGCS1-203ENST00000507004 CACNB2Q08289 660 aaPredicted RBP17.24■□□□□ 0.35
HMGCS1-203ENST00000507004 PPP4R3BQ5MIZ7 849 aa17.24■□□□□ 0.35
HMGCS1-203ENST00000507004 OSBP2Q969R2 916 aa17.24■□□□□ 0.35
HMGCS1-203ENST00000507004 MOV10L1Q9BXT6 1211 aaKnown RBP17.24■□□□□ 0.35
HMGCS1-203ENST00000507004 C11orf49Q9H6J7 331 aa17.24■□□□□ 0.35
HMGCS1-203ENST00000507004 MKI67P46013 3256 aaKnown RBP17.24■□□□□ 0.35
HMGCS1-203ENST00000507004 CEP290O15078 2479 aa17.24■□□□□ 0.35
HMGCS1-203ENST00000507004 CYP2D7A0A087X1C5 515 aa17.23■□□□□ 0.35
HMGCS1-203ENST00000507004 PATL2C9JE40 543 aaKnown RBP17.23■□□□□ 0.35
HMGCS1-203ENST00000507004 MX1P20591 662 aa17.23■□□□□ 0.35
HMGCS1-203ENST00000507004 EVX2Q03828 476 aa17.23■□□□□ 0.35
HMGCS1-203ENST00000507004 TRIM32Q13049 653 aa17.23■□□□□ 0.35
HMGCS1-203ENST00000507004 OLFML2BQ68BL8 750 aa17.23■□□□□ 0.35
HMGCS1-203ENST00000507004 DPP9Q86TI2 863 aa17.23■□□□□ 0.35
HMGCS1-203ENST00000507004 SIAH1Q8IUQ4 282 aa17.23■□□□□ 0.35
HMGCS1-203ENST00000507004 ZNF444Q8N0Y2 327 aaPredicted RBP17.23■□□□□ 0.35
HMGCS1-203ENST00000507004 NYAP2Q9P242 653 aa17.23■□□□□ 0.35
HMGCS1-203ENST00000507004 MINDY4BA8MYZ0 360 aa17.22■□□□□ 0.35
HMGCS1-203ENST00000507004 APPP05067 770 aa17.22■□□□□ 0.35
HMGCS1-203ENST00000507004 ERCC3P19447 782 aa17.22■□□□□ 0.35
HMGCS1-203ENST00000507004 HDAC1Q13547 482 aaPredicted RBP17.22■□□□□ 0.35
HMGCS1-203ENST00000507004 PI4K2BQ8TCG2 481 aa17.22■□□□□ 0.35
HMGCS1-203ENST00000507004 FSD1Q9BTV5 496 aa17.22■□□□□ 0.35
HMGCS1-203ENST00000507004 ADAMTS5Q9UNA0 930 aa17.22■□□□□ 0.35
HMGCS1-203ENST00000507004 CHGBP05060 677 aa17.21■□□□□ 0.35
HMGCS1-203ENST00000507004 PDE4BQ07343 736 aa17.21■□□□□ 0.35
HMGCS1-203ENST00000507004 CCL14Q16627 93 aa17.21■□□□□ 0.35
HMGCS1-203ENST00000507004 CHRDL2Q6WN34 429 aa17.21■□□□□ 0.35
HMGCS1-203ENST00000507004 SPICE1Q8N0Z3 855 aa17.21■□□□□ 0.35
HMGCS1-203ENST00000507004 ZNF236Q9UL36 1845 aa17.21■□□□□ 0.35
HMGCS1-203ENST00000507004 FCER1AP12319 257 aa17.2■□□□□ 0.34
HMGCS1-203ENST00000507004 RASA1P20936 1047 aa17.2■□□□□ 0.34
HMGCS1-203ENST00000507004 ADORA2AP29274 412 aa17.2■□□□□ 0.34
HMGCS1-203ENST00000507004 PLS1Q14651 629 aa17.2■□□□□ 0.34
HMGCS1-203ENST00000507004 NCAPG2Q86XI2 1143 aa17.2■□□□□ 0.34
HMGCS1-203ENST00000507004 IFNL3Q8IZI9 196 aa17.2■□□□□ 0.34
HMGCS1-203ENST00000507004 ATG4CQ96DT6 458 aa17.2■□□□□ 0.34
HMGCS1-203ENST00000507004 DDX20Q9UHI6 824 aaKnown RBP17.2■□□□□ 0.34
HMGCS1-203ENST00000507004 NRBP1Q9UHY1 535 aa17.2■□□□□ 0.34
HMGCS1-203ENST00000507004 PPP1R9AQ9ULJ8 1098 aa17.2■□□□□ 0.34
HMGCS1-203ENST00000507004 A0A0G2JMZ2 1700 aa17.2■□□□□ 0.34
HMGCS1-203ENST00000507004 CCND3P30281 292 aaPredicted RBP17.19■□□□□ 0.34
HMGCS1-203ENST00000507004 FXR1P51114 621 aaKnown RBP eCLIP17.19■□□□□ 0.341e-6■■■■□ 20.2
HMGCS1-203ENST00000507004 ZMYM1Q5SVZ6 1142 aa17.19■□□□□ 0.34
HMGCS1-203ENST00000507004 ANKRD45Q5TZF3 282 aa17.19■□□□□ 0.34
HMGCS1-203ENST00000507004 TSHZ3Q63HK5 1081 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms