RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 ACER1Q8TDN7 264 aa9.65□□□□□ -0.86
LIMCH1-206ENST00000505705 KCNB2Q92953 911 aa9.65□□□□□ -0.86
LIMCH1-206ENST00000505705 CHMP4CQ96CF2 233 aa9.65□□□□□ -0.86
LIMCH1-206ENST00000505705 TTC14Q96N46 770 aa9.65□□□□□ -0.86
LIMCH1-206ENST00000505705 GOPCQ9HD26 462 aa9.65□□□□□ -0.86
LIMCH1-206ENST00000505705 DOCK1Q14185 1865 aa9.64□□□□□ -0.87
LIMCH1-206ENST00000505705 IGKV6D-41A0A0C4DH26 115 aa9.64□□□□□ -0.87
LIMCH1-206ENST00000505705 A0A1W2PRG0 241 aa9.64□□□□□ -0.87
LIMCH1-206ENST00000505705 CCDC69A6NI79 296 aa9.64□□□□□ -0.87
LIMCH1-206ENST00000505705 FAM155AB1AL88 458 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-206ENST00000505705 ANAPC15P60006 121 aa9.64□□□□□ -0.87
LIMCH1-206ENST00000505705 SYNE3Q6ZMZ3 975 aa9.64□□□□□ -0.87
LIMCH1-206ENST00000505705 MB21D2Q8IYB1 491 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-206ENST00000505705 SPICE1Q8N0Z3 855 aa9.64□□□□□ -0.87
LIMCH1-206ENST00000505705 LRRC47Q8N1G4 583 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-206ENST00000505705 SP7Q8TDD2 431 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-206ENST00000505705 TCEANC2Q96MN5 208 aa9.64□□□□□ -0.87
LIMCH1-206ENST00000505705 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.64□□□□□ -0.87
LIMCH1-206ENST00000505705 LRRC2Q9BYS8 371 aa9.64□□□□□ -0.87
LIMCH1-206ENST00000505705 IL17RBQ9NRM6 502 aa9.64□□□□□ -0.87
LIMCH1-206ENST00000505705 NAP1L2Q9ULW6 460 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-206ENST00000505705 KCNH4Q9UQ05 1017 aa9.64□□□□□ -0.87
LIMCH1-206ENST00000505705 TMX2Q9Y320 296 aa9.64□□□□□ -0.87
LIMCH1-206ENST00000505705 CYP46A1Q9Y6A2 500 aa9.64□□□□□ -0.87
LIMCH1-206ENST00000505705 PLIN4Q96Q06 1357 aa9.63□□□□□ -0.87
LIMCH1-206ENST00000505705 OTOFQ9HC10 1997 aa9.63□□□□□ -0.87
LIMCH1-206ENST00000505705 A0A0G2JLL6 359 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-206ENST00000505705 F5H6K3 240 aa9.63□□□□□ -0.87
LIMCH1-206ENST00000505705 TOP1P11387 765 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-206ENST00000505705 CPA1P15085 419 aa9.63□□□□□ -0.87
LIMCH1-206ENST00000505705 MAP2K2P36507 400 aa9.63□□□□□ -0.87
LIMCH1-206ENST00000505705 KLRC3Q07444 240 aa9.63□□□□□ -0.87
LIMCH1-206ENST00000505705 PABPC4Q13310 644 aaKnown RBP eCLIP9.63□□□□□ -0.87
LIMCH1-206ENST00000505705 DGKZQ13574 1117 aa9.63□□□□□ -0.87
LIMCH1-206ENST00000505705 SLFN13Q68D06 897 aa9.63□□□□□ -0.87
LIMCH1-206ENST00000505705 RUFY3Q7L099 469 aa9.63□□□□□ -0.87
LIMCH1-206ENST00000505705 PRRT2Q7Z6L0 340 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-206ENST00000505705 SIAH1Q8IUQ4 282 aa9.63□□□□□ -0.87
LIMCH1-206ENST00000505705 TMTC2Q8N394 836 aa9.63□□□□□ -0.87
LIMCH1-206ENST00000505705 PROCA1Q8NCQ7 364 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-206ENST00000505705 NKX2-3Q8TAU0 364 aa9.63□□□□□ -0.87
LIMCH1-206ENST00000505705 MKL1Q969V6 931 aa9.63□□□□□ -0.87
LIMCH1-206ENST00000505705 TMEM87BQ96K49 555 aa9.63□□□□□ -0.87
LIMCH1-206ENST00000505705 TMEM47Q9BQJ4 181 aa9.63□□□□□ -0.87
LIMCH1-206ENST00000505705 BEGAINQ9BUH8 593 aa9.63□□□□□ -0.87
LIMCH1-206ENST00000505705 KIAA1683Q9H0B3 1180 aa9.63□□□□□ -0.87
LIMCH1-206ENST00000505705 VCPKMTQ9H867 229 aa9.63□□□□□ -0.87
LIMCH1-206ENST00000505705 PDRG1Q9NUG6 133 aa9.63□□□□□ -0.87
LIMCH1-206ENST00000505705 LAMA4Q16363 1823 aa9.63□□□□□ -0.87
LIMCH1-206ENST00000505705 ATAD5Q96QE3 1844 aa9.63□□□□□ -0.87
LIMCH1-206ENST00000505705 OSBPP22059 807 aa9.62□□□□□ -0.87
LIMCH1-206ENST00000505705 RPS6KB1P23443 525 aa9.62□□□□□ -0.87
LIMCH1-206ENST00000505705 SLC1A4P43007 532 aa9.62□□□□□ -0.87
LIMCH1-206ENST00000505705 ANTXR2P58335 489 aa9.62□□□□□ -0.87
LIMCH1-206ENST00000505705 IRX3P78415 501 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-206ENST00000505705 IKQ13123 557 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-206ENST00000505705 CCDC96Q2M329 555 aa9.62□□□□□ -0.87
LIMCH1-206ENST00000505705 SH3D19Q5HYK7 790 aa9.62□□□□□ -0.87
LIMCH1-206ENST00000505705 Q6ZUG5 572 aa9.62□□□□□ -0.87
LIMCH1-206ENST00000505705 CATIPQ7Z7H3 387 aa9.62□□□□□ -0.87
LIMCH1-206ENST00000505705 ENAHQ8N8S7 591 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-206ENST00000505705 PNMA1Q8ND90 353 aa9.62□□□□□ -0.87
LIMCH1-206ENST00000505705 NUP133Q8WUM0 1156 aa9.62□□□□□ -0.87
LIMCH1-206ENST00000505705 LPAR1Q92633 364 aa9.62□□□□□ -0.87
LIMCH1-206ENST00000505705 MS4A4AQ96JQ5 239 aa9.62□□□□□ -0.87
LIMCH1-206ENST00000505705 ZIC5Q96T25 663 aa9.62□□□□□ -0.87
LIMCH1-206ENST00000505705 MTA3Q9BTC8 594 aa9.62□□□□□ -0.87
LIMCH1-206ENST00000505705 UPF3BQ9BZI7 483 aaKnown RBP9.62□□□□□ -0.87
LIMCH1-206ENST00000505705 TM6SF1Q9BZW5 370 aa9.62□□□□□ -0.87
LIMCH1-206ENST00000505705 TANGO6Q9C0B7 1094 aa9.62□□□□□ -0.87
LIMCH1-206ENST00000505705 EMILIN3Q9NT22 766 aa9.62□□□□□ -0.87
LIMCH1-206ENST00000505705 WDR19Q8NEZ3 1342 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 USP17L15C9J2P7 530 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 BTBD19C9JJ37 291 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 USP17L13C9JLJ4 530 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 USP17L11C9JVI0 530 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 USP17L18D6R9N7 530 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 USP17L22D6RA61 530 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 USP17L17D6RBQ6 530 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 USP17L19D6RCP7 530 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 USP17L20D6RJB6 530 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 PDHXO00330 501 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 SH2B2O14492 632 aaPredicted RBP9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 ALDH1A1P00352 501 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 BMP3P12645 472 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 VCAM1P19320 739 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 TM4SF4P48230 202 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 RBM25P49756 843 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 NEK4P51957 841 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 EXOSC10Q01780 885 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 MAP2K1Q02750 393 aaPredicted RBP9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 USP17L24Q0WX57 530 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 FAM83BQ5T0W9 1011 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 TREML2Q5T2D2 321 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 ANKRD23Q86SG2 305 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 IFNL1Q8IU54 200 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 GMCL1P1Q8NEA9 526 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 IGDCC4Q8TDY8 1250 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 BRI3BPQ8WY22 251 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 RPAP3Q9H6T3 665 aaPredicted RBP9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms