RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 MYO5BQ9ULV0 1848 aa12.06□□□□□ -0.48
LIMCH1-205ENST00000503057 STK36Q9NRP7 1315 aa12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 SMCO2A6NFE2 343 aa12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 ADKP55263 362 aaKnown RBP12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 HS2ST1Q7LGA3 356 aa12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 CCDC24Q8N4L8 307 aa12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 SNX29Q8TEQ0 813 aa12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 GSDMAQ96QA5 445 aa12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 PCDHA5Q9Y5H7 936 aa12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 KCNJ18B7U540 433 aa12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 U2AF2P26368 475 aaKnown RBP eCLIP12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 PRPF4BQ13523 1007 aaKnown RBP12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 KCNJ12Q14500 433 aa12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 CCDC174Q6PII3 467 aa12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 ATG9AQ7Z3C6 839 aa12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 MAATS1Q7Z4T9 603 aa12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 MB21D2Q8IYB1 491 aaPredicted RBP12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 ZHX1Q9UKY1 873 aaPredicted RBP12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 PPP2R2CQ9Y2T4 447 aa12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 IVLP07476 585 aa12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 SUSD4Q5VX71 490 aa12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 USPL1Q5W0Q7 1092 aa12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 PGBD1Q96JS3 809 aa12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 NBPF26B4DH59 902 aa12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 PRKAB2O43741 272 aa12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 EIF6P56537 245 aaKnown RBP12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 ERFEQ4G0M1 354 aa12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 NBPF10Q6P3W6 841 aaKnown RBP12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 NBPF15Q8N660 670 aa12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 STAG1Q8WVM7 1258 aa12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 PLA2G12BQ9BX93 195 aa12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 ZMYND15Q9H091 742 aa12.05□□□□□ -0.48
LIMCH1-205ENST00000503057 MACROD2A1Z1Q3 448 aa12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 LAD1O00515 517 aa12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 NT5C2P49902 561 aa12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 PTGDRQ13258 359 aa12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 TRIM28Q13263 835 aaKnown RBP12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 STAMQ92783 540 aa12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 SH2D4AQ9H788 454 aa12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 MAGEF1Q9HAY2 307 aa12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 LEMD3Q9Y2U8 911 aa12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 PRPF3O43395 683 aaKnown RBP12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 ARID5AQ03989 594 aa12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 SLIT1O75093 1534 aa12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 SIGLEC1Q9BZZ2 1709 aa12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 GBP2P32456 591 aaPredicted RBP12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 DPP8Q6V1X1 898 aaPredicted RBP12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 USP21Q9UK80 565 aa12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 ZNF609O15014 1411 aa12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 H7C1D1 291 aa12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 CALUO43852 315 aaPredicted RBP12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 STX10O60499 249 aa12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 EPB41P11171 864 aaKnown RBP12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 MFSD14BQ5SR56 506 aa12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 PPP1R13BQ96KQ4 1090 aa12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 XDHP47989 1333 aa12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 ETF1P62495 437 aaKnown RBP12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 ZNF827Q17R98 1081 aa12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 CACTINQ8WUQ7 758 aaKnown RBP12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 PLVAPQ9BX97 442 aa12.04□□□□□ -0.48
LIMCH1-205ENST00000503057 RPN1P04843 607 aaKnown RBP12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 GABPB1Q06547 395 aaPredicted RBP12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 SLFNL1Q499Z3 407 aa12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 TBC1D10CQ8IV04 446 aa12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 SECISBP2LQ93073 1101 aaKnown RBP12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 BSDC1Q9NW68 430 aaPredicted RBP12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 BCCIPQ9P287 314 aaKnown RBP eCLIP12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 SRPRBQ9Y5M8 271 aaKnown RBP12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 KDM3AQ9Y4C1 1321 aa12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 OR52Z1P0C646 297 aa12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 RCAN1P53805 252 aa12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 CCDC84Q86UT8 332 aaPredicted RBP12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 NT5C3AQ9H0P0 336 aa12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 PCDHA4Q9UN74 947 aa12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 TMED8Q6PL24 325 aaPredicted RBP12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 CLEC4GQ6UXB4 293 aa12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 NEK8Q86SG6 692 aa12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 MTA3Q9BTC8 594 aa12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 KLRF2D3W0D1 207 aa12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 NEFHP12036 1026 aa12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 BTDP43251 543 aa12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 DYNLL1P63167 89 aaKnown RBP12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 PDIA6Q15084 440 aa12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 ALX1Q15699 326 aa12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 KIAA0753Q2KHM9 967 aa12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 RESP18Q5W5W9 173 aa12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 BPIFA3Q9BQP9 254 aa12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 RASAL2Q9UJF2 1139 aa12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 MAN1B1Q9UKM7 699 aa12.03□□□□□ -0.48
LIMCH1-205ENST00000503057 CYP19A1P11511 503 aaPredicted RBP12.02□□□□□ -0.48
LIMCH1-205ENST00000503057 INF2Q27J81 1249 aa12.02□□□□□ -0.48
LIMCH1-205ENST00000503057 GPR161Q8N6U8 529 aaKnown RBP12.02□□□□□ -0.48
LIMCH1-205ENST00000503057 GPKOWQ92917 476 aaPredicted RBP eCLIP12.02□□□□□ -0.48
LIMCH1-205ENST00000503057 ARHGEF10LQ9HCE6 1279 aa12.02□□□□□ -0.48
LIMCH1-205ENST00000503057 GPHNQ9NQX3 736 aaPredicted RBP12.02□□□□□ -0.48
LIMCH1-205ENST00000503057 BIN2Q9UBW5 565 aaPredicted RBP12.02□□□□□ -0.48
LIMCH1-205ENST00000503057 NEDD4P46934 1319 aa12.02□□□□□ -0.48
LIMCH1-205ENST00000503057 SALL3Q9BXA9 1300 aa12.02□□□□□ -0.48
LIMCH1-205ENST00000503057 SLC1A4P43007 532 aa12.02□□□□□ -0.49
LIMCH1-205ENST00000503057 EXOSC10Q01780 885 aaKnown RBP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms