RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 SLFN13Q68D06 897 aa9.58□□□□□ -0.88
USP54-215ENST00000497106 DPF2Q92785 391 aa9.58□□□□□ -0.88
USP54-215ENST00000497106 TDRD3Q9H7E2 651 aaKnown RBP9.58□□□□□ -0.88
USP54-215ENST00000497106 TMOD4Q9NZQ9 345 aa9.58□□□□□ -0.88
USP54-215ENST00000497106 NYAP2Q9P242 653 aa9.58□□□□□ -0.88
USP54-215ENST00000497106 PPP2R3BQ9Y5P8 575 aa9.58□□□□□ -0.88
USP54-215ENST00000497106 CUTAO60888 179 aa9.58□□□□□ -0.88
USP54-215ENST00000497106 ASNSP08243 561 aa9.58□□□□□ -0.88
USP54-215ENST00000497106 FAM83AQ86UY5 434 aa9.58□□□□□ -0.88
USP54-215ENST00000497106 ANKRD20A12PQ8NF67 263 aa9.58□□□□□ -0.88
USP54-215ENST00000497106 CLRN2A0PK11 232 aa9.57□□□□□ -0.88
USP54-215ENST00000497106 RASA1P20936 1047 aa9.57□□□□□ -0.88
USP54-215ENST00000497106 TTLL12Q14166 644 aaPredicted RBP9.57□□□□□ -0.88
USP54-215ENST00000497106 FAM160B2Q86V87 743 aa9.57□□□□□ -0.88
USP54-215ENST00000497106 KRI1Q8N9T8 703 aaKnown RBP9.57□□□□□ -0.88
USP54-215ENST00000497106 LEO1Q8WVC0 666 aaPredicted RBP9.57□□□□□ -0.88
USP54-215ENST00000497106 TMEM47Q9BQJ4 181 aa9.57□□□□□ -0.88
USP54-215ENST00000497106 USP25Q9UHP3 1055 aa9.57□□□□□ -0.88
USP54-215ENST00000497106 SPDYE2BA6NHP3 402 aa9.57□□□□□ -0.88
USP54-215ENST00000497106 WDHD1O75717 1129 aaPredicted RBP9.57□□□□□ -0.88
USP54-215ENST00000497106 SPDYE6P0CI01 402 aa9.57□□□□□ -0.88
USP54-215ENST00000497106 RESTQ13127 1097 aa9.57□□□□□ -0.88
USP54-215ENST00000497106 SULF1Q8IWU6 871 aa9.57□□□□□ -0.88
USP54-215ENST00000497106 FERMT2Q96AC1 680 aa9.57□□□□□ -0.88
USP54-215ENST00000497106 MPHOSPH6Q99547 160 aaKnown RBP9.57□□□□□ -0.88
USP54-215ENST00000497106 GPCPD1Q9NPB8 672 aa9.57□□□□□ -0.88
USP54-215ENST00000497106 LMBRD1Q9NUN5 540 aa9.57□□□□□ -0.88
USP54-215ENST00000497106 RTEL1Q9NZ71 1219 aa9.57□□□□□ -0.88
USP54-215ENST00000497106 MMP1P03956 469 aa9.57□□□□□ -0.88
USP54-215ENST00000497106 TPM2P07951 284 aa9.57□□□□□ -0.88
USP54-215ENST00000497106 KIF4BQ2VIQ3 1234 aa9.57□□□□□ -0.88
USP54-215ENST00000497106 ILDR1Q86SU0 546 aaPredicted RBP9.57□□□□□ -0.88
USP54-215ENST00000497106 TEX2Q8IWB9 1127 aa9.57□□□□□ -0.88
USP54-215ENST00000497106 SPZ1Q9BXG8 430 aa9.57□□□□□ -0.88
USP54-215ENST00000497106 ZNF341Q9BYN7 854 aa9.57□□□□□ -0.88
USP54-215ENST00000497106 POLR3EQ9NVU0 708 aa9.57□□□□□ -0.88
USP54-215ENST00000497106 ANO10Q9NW15 660 aa9.57□□□□□ -0.88
USP54-215ENST00000497106 ORC2Q13416 577 aaPredicted RBP9.56□□□□□ -0.88
USP54-215ENST00000497106 NONOQ15233 471 aaKnown RBP eCLIP9.56□□□□□ -0.88
USP54-215ENST00000497106 BLIDQ8IZY5 108 aa9.56□□□□□ -0.88
USP54-215ENST00000497106 KIF23Q02241 960 aaPredicted RBP9.56□□□□□ -0.88
USP54-215ENST00000497106 SAMD1Q6SPF0 538 aaPredicted RBP9.56□□□□□ -0.88
USP54-215ENST00000497106 MYOZ2Q9NPC6 264 aa9.56□□□□□ -0.88
USP54-215ENST00000497106 TPD52L1Q16890 204 aaPredicted RBP9.56□□□□□ -0.88
USP54-215ENST00000497106 SPDYE3A6NKU9 549 aa9.56□□□□□ -0.88
USP54-215ENST00000497106 B4DLN1 442 aa9.56□□□□□ -0.88
USP54-215ENST00000497106 LAD1O00515 517 aa9.56□□□□□ -0.88
USP54-215ENST00000497106 RHBDL3P58872 404 aa9.56□□□□□ -0.88
USP54-215ENST00000497106 PFKFB3Q16875 520 aaPredicted RBP9.56□□□□□ -0.88
USP54-215ENST00000497106 DRC7Q8IY82 874 aa9.56□□□□□ -0.88
USP54-215ENST00000497106 MTMR4Q9NYA4 1195 aa9.56□□□□□ -0.88
USP54-215ENST00000497106 PCDHA4Q9UN74 947 aa9.56□□□□□ -0.88
USP54-215ENST00000497106 TAF6LQ9Y6J9 622 aa9.56□□□□□ -0.88
USP54-215ENST00000497106 COL1A1P02452 1464 aaPredicted RBP9.56□□□□□ -0.88
USP54-215ENST00000497106 PPP1R12BO60237 982 aaPredicted RBP9.55□□□□□ -0.88
USP54-215ENST00000497106 PPP6R2O75170 966 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 NASPP49321 788 aaPredicted RBP9.55□□□□□ -0.88
USP54-215ENST00000497106 FAM160A1Q05DH4 1040 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 STIM1Q13586 685 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 SEC23AQ15436 765 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 SPDYE2Q495Y8 402 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 TTC38Q5R3I4 469 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 LRRC47Q8N1G4 583 aaKnown RBP9.55□□□□□ -0.88
USP54-215ENST00000497106 MTMR14Q8NCE2 650 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 GDPD2Q9HCC8 539 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 BMP2KQ9NSY1 1161 aaPredicted RBP9.55□□□□□ -0.88
USP54-215ENST00000497106 A0A1W2PQ27 194 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 A0A1W2PQ64 194 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 A0A1W2PQD8 194 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 SMTNL1A8MU46 457 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 AMPD3Q01432 767 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 UVSSAQ2YD98 709 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 APOBEC3HQ6NTF7 200 aaKnown RBP9.55□□□□□ -0.88
USP54-215ENST00000497106 MICALL2Q8IY33 904 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 CEP95Q96GE4 821 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 CALML4Q96GE6 196 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 CSADQ9Y600 493 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 IQCA1LA6NCM1 817 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 ZBED4O75132 1171 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 FOSP01100 380 aaPredicted RBP9.55□□□□□ -0.88
USP54-215ENST00000497106 FDX1P10109 184 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 SYKP43405 635 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 LRSAM1Q6UWE0 723 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 REXO1Q8N1G1 1221 aaKnown RBP9.55□□□□□ -0.88
USP54-215ENST00000497106 GPHNQ9NQX3 736 aaPredicted RBP9.55□□□□□ -0.88
USP54-215ENST00000497106 BMP3P12645 472 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 CXCL9Q07325 125 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 ZSCAN23Q3MJ62 389 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 ADALQ6DHV7 355 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 ERMNQ8TAM6 284 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 CCDC43Q96MW1 224 aaKnown RBP9.55□□□□□ -0.88
USP54-215ENST00000497106 RNF181Q9P0P0 153 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 VPS54Q9P1Q0 977 aa9.55□□□□□ -0.88
USP54-215ENST00000497106 CNOT7Q9UIV1 285 aaKnown RBP9.55□□□□□ -0.88
USP54-215ENST00000497106 PNMA6FA0A0J9YX94 578 aa9.54□□□□□ -0.88
USP54-215ENST00000497106 PLCD1P51178 756 aa9.54□□□□□ -0.88
USP54-215ENST00000497106 STX1AQ16623 288 aa9.54□□□□□ -0.88
USP54-215ENST00000497106 CNNM3Q8NE01 707 aa9.54□□□□□ -0.88
USP54-215ENST00000497106 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.54□□□□□ -0.88
USP54-215ENST00000497106 HPS5Q9UPZ3 1129 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms