RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 WDR89Q96FK6 387 aaPredicted RBP6.79□□□□□ -1.32
CSMD3-208ENST00000497026 C8orf37Q96NL8 207 aa6.79□□□□□ -1.32
CSMD3-208ENST00000497026 GPN3Q9UHW5 284 aaPredicted RBP6.79□□□□□ -1.32
CSMD3-208ENST00000497026 BCL9LQ86UU0 1499 aa6.79□□□□□ -1.32
CSMD3-208ENST00000497026 PIK3C2AO00443 1686 aa6.79□□□□□ -1.32
CSMD3-208ENST00000497026 EVC2Q86UK5 1308 aa6.78□□□□□ -1.32
CSMD3-208ENST00000497026 AOC2O75106 756 aa6.78□□□□□ -1.32
CSMD3-208ENST00000497026 MAPK8P45983 427 aa6.78□□□□□ -1.32
CSMD3-208ENST00000497026 IRAK1P51617 712 aa6.78□□□□□ -1.32
CSMD3-208ENST00000497026 DSC3Q14574 896 aa6.78□□□□□ -1.32
CSMD3-208ENST00000497026 NGDNQ8NEJ9 315 aaKnown RBP6.78□□□□□ -1.32
CSMD3-208ENST00000497026 CCDC86Q9H6F5 360 aaKnown RBP6.78□□□□□ -1.32
CSMD3-208ENST00000497026 ATG3Q9NT62 314 aa6.78□□□□□ -1.32
CSMD3-208ENST00000497026 FAM105AQ9NUU6 356 aa6.78□□□□□ -1.32
CSMD3-208ENST00000497026 AKAP2Q9Y2D5 859 aa6.78□□□□□ -1.32
CSMD3-208ENST00000497026 USP6P35125 1406 aa6.78□□□□□ -1.32
CSMD3-208ENST00000497026 SSH2Q76I76 1423 aa6.78□□□□□ -1.32
CSMD3-208ENST00000497026 CD163L1Q9NR16 1453 aa6.78□□□□□ -1.32
CSMD3-208ENST00000497026 CDK12Q9NYV4 1490 aaPredicted RBP6.78□□□□□ -1.32
CSMD3-208ENST00000497026 TREHO43280 583 aa6.77□□□□□ -1.33
CSMD3-208ENST00000497026 GRIK1P39086 918 aa6.77□□□□□ -1.33
CSMD3-208ENST00000497026 ASPAP45381 313 aa6.77□□□□□ -1.33
CSMD3-208ENST00000497026 PTPN12Q05209 780 aaKnown RBP6.77□□□□□ -1.33
CSMD3-208ENST00000497026 ZNF772Q68DY9 489 aaPredicted RBP6.77□□□□□ -1.33
CSMD3-208ENST00000497026 TBC1D32Q96NH3 1257 aa6.77□□□□□ -1.33
CSMD3-208ENST00000497026 TESK2Q96S53 571 aa6.77□□□□□ -1.33
CSMD3-208ENST00000497026 WDR18Q9BV38 432 aa6.77□□□□□ -1.33
CSMD3-208ENST00000497026 OSBPL1AQ9BXW6 950 aa6.77□□□□□ -1.33
CSMD3-208ENST00000497026 WWC3Q9ULE0 1092 aa6.77□□□□□ -1.33
CSMD3-208ENST00000497026 PPP1R9AQ9ULJ8 1098 aa6.77□□□□□ -1.33
CSMD3-208ENST00000497026 ATRNO75882 1429 aa6.77□□□□□ -1.33
CSMD3-208ENST00000497026 GLI3P10071 1580 aa6.77□□□□□ -1.33
CSMD3-208ENST00000497026 USP47Q96K76 1375 aa6.77□□□□□ -1.33
CSMD3-208ENST00000497026 USP54Q70EL1 1684 aa6.77□□□□□ -1.33
CSMD3-208ENST00000497026 COL14A1Q05707 1796 aaKnown RBP6.77□□□□□ -1.33
CSMD3-208ENST00000497026 RGS12O14924 1447 aa6.76□□□□□ -1.33
CSMD3-208ENST00000497026 CPSF1Q10570 1443 aaKnown RBP6.76□□□□□ -1.33
CSMD3-208ENST00000497026 FAM170BA6NMN3 283 aa6.76□□□□□ -1.33
CSMD3-208ENST00000497026 KIAA1324LA8MWY0 1029 aaPredicted RBP6.76□□□□□ -1.33
CSMD3-208ENST00000497026 EIF4EBP3O60516 100 aaPredicted RBP6.76□□□□□ -1.33
CSMD3-208ENST00000497026 AP3B2Q13367 1082 aa6.76□□□□□ -1.33
CSMD3-208ENST00000497026 ENOX2Q16206 610 aaKnown RBP6.76□□□□□ -1.33
CSMD3-208ENST00000497026 STK35Q8TDR2 534 aa6.76□□□□□ -1.33
CSMD3-208ENST00000497026 SEMA6CQ9H3T2 930 aa6.76□□□□□ -1.33
CSMD3-208ENST00000497026 PIM2Q9P1W9 311 aa6.76□□□□□ -1.33
CSMD3-208ENST00000497026 PRKAG2Q9UGJ0 569 aa6.76□□□□□ -1.33
CSMD3-208ENST00000497026 DAGLAQ9Y4D2 1042 aa6.76□□□□□ -1.33
CSMD3-208ENST00000497026 MYOM1P52179 1685 aa6.76□□□□□ -1.33
CSMD3-208ENST00000497026 LMO7Q8WWI1 1683 aa6.76□□□□□ -1.33
CSMD3-208ENST00000497026 SLIT3O75094 1523 aa6.76□□□□□ -1.33
CSMD3-208ENST00000497026 ST20-MTHFSA0A0A6YYL1 179 aa6.76□□□□□ -1.33
CSMD3-208ENST00000497026 DYNC1LI2O43237 492 aaPredicted RBP6.76□□□□□ -1.33
CSMD3-208ENST00000497026 RPS26P11Q5JNZ5 115 aaPredicted RBP6.76□□□□□ -1.33
CSMD3-208ENST00000497026 EZH1Q92800 747 aaPredicted RBP6.76□□□□□ -1.33
CSMD3-208ENST00000497026 YIPF2Q9BWQ6 316 aa6.76□□□□□ -1.33
CSMD3-208ENST00000497026 ZFYVE1Q9HBF4 777 aa6.76□□□□□ -1.33
CSMD3-208ENST00000497026 PPP4R2Q9NY27 417 aa6.76□□□□□ -1.33
CSMD3-208ENST00000497026 LEMD3Q9Y2U8 911 aa6.76□□□□□ -1.33
CSMD3-208ENST00000497026 USP19O94966 1318 aa6.75□□□□□ -1.33
CSMD3-208ENST00000497026 ZNF862O60290 1169 aa6.75□□□□□ -1.33
CSMD3-208ENST00000497026 SPINK2P20155 84 aa6.75□□□□□ -1.33
CSMD3-208ENST00000497026 HP1BP3Q5SSJ5 553 aaPredicted RBP6.75□□□□□ -1.33
CSMD3-208ENST00000497026 INTS5Q6P9B9 1019 aaKnown RBP6.75□□□□□ -1.33
CSMD3-208ENST00000497026 ZAR1Q86SH2 424 aa6.75□□□□□ -1.33
CSMD3-208ENST00000497026 GIMAP7Q8NHV1 300 aa6.75□□□□□ -1.33
CSMD3-208ENST00000497026 KCNB2Q92953 911 aa6.75□□□□□ -1.33
CSMD3-208ENST00000497026 ACSS3Q9H6R3 686 aa6.75□□□□□ -1.33
CSMD3-208ENST00000497026 TMEM39AQ9NV64 488 aa6.75□□□□□ -1.33
CSMD3-208ENST00000497026 RNF114Q9Y508 228 aa6.75□□□□□ -1.33
CSMD3-208ENST00000497026 BRD4O60885 1362 aaPredicted RBP6.75□□□□□ -1.33
CSMD3-208ENST00000497026 COL18A1P39060 1754 aa6.74□□□□□ -1.33
CSMD3-208ENST00000497026 BRWD3Q6RI45 1802 aa6.74□□□□□ -1.33
CSMD3-208ENST00000497026 FAM83GA6ND36 823 aa6.74□□□□□ -1.33
CSMD3-208ENST00000497026 FBXO24O75426 580 aa6.74□□□□□ -1.33
CSMD3-208ENST00000497026 GSTP1P09211 210 aaKnown RBP6.74□□□□□ -1.33
CSMD3-208ENST00000497026 RBM6P78332 1123 aaKnown RBP6.74□□□□□ -1.33
CSMD3-208ENST00000497026 TRPC5Q9UL62 973 aaPredicted RBP6.74□□□□□ -1.33
CSMD3-208ENST00000497026 OAS3Q9Y6K5 1087 aaKnown RBP6.74□□□□□ -1.33
CSMD3-208ENST00000497026 A0A1W2PP64 1363 aa6.74□□□□□ -1.33
CSMD3-208ENST00000497026 CAMTA1Q9Y6Y1 1673 aa6.73□□□□□ -1.33
CSMD3-208ENST00000497026 KIAA0232Q92628 1395 aa6.73□□□□□ -1.33
CSMD3-208ENST00000497026 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.73□□□□□ -1.33
CSMD3-208ENST00000497026 TMPRSS2O15393 492 aa6.73□□□□□ -1.33
CSMD3-208ENST00000497026 GP2P55259 537 aaKnown RBP6.73□□□□□ -1.33
CSMD3-208ENST00000497026 KCNA1Q09470 495 aa6.73□□□□□ -1.33
CSMD3-208ENST00000497026 MAP7Q14244 749 aa6.73□□□□□ -1.33
CSMD3-208ENST00000497026 TPTE2Q6XPS3 522 aa6.73□□□□□ -1.33
CSMD3-208ENST00000497026 DTX1Q86Y01 620 aa6.73□□□□□ -1.33
CSMD3-208ENST00000497026 UNC5CLQ8IV45 518 aa6.73□□□□□ -1.33
CSMD3-208ENST00000497026 ZSCAN29Q8IWY8 852 aaPredicted RBP6.73□□□□□ -1.33
CSMD3-208ENST00000497026 GATA6Q92908 595 aa6.73□□□□□ -1.33
CSMD3-208ENST00000497026 PUS7Q96PZ0 661 aaKnown RBP6.73□□□□□ -1.33
CSMD3-208ENST00000497026 SLC12A5Q9H2X9 1139 aa6.73□□□□□ -1.33
CSMD3-208ENST00000497026 LRRC4CQ9HCJ2 640 aa6.73□□□□□ -1.33
CSMD3-208ENST00000497026 NFAT5O94916 1531 aa6.73□□□□□ -1.33
CSMD3-208ENST00000497026 TTC21BQ7Z4L5 1316 aa6.72□□□□□ -1.33
CSMD3-208ENST00000497026 RGPD5Q99666 1765 aa6.72□□□□□ -1.33
CSMD3-208ENST00000497026 ARID1BQ8NFD5 2236 aaPredicted RBP6.72□□□□□ -1.33
CSMD3-208ENST00000497026 CPDO75976 1380 aa6.72□□□□□ -1.33
CSMD3-208ENST00000497026 KTN1Q86UP2 1357 aaKnown RBP6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms