RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 UBLCP1Q8WVY7 318 aaPredicted RBP6.42□□□□□ -1.38
USF3-204ENST00000496826 NUP88Q99567 741 aaPredicted RBP6.42□□□□□ -1.38
USF3-204ENST00000496826 IFT122Q9HBG6 1241 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 SMARCAL1Q9NZC9 954 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 EEF1GP26641 437 aaKnown RBP6.42□□□□□ -1.38
USF3-204ENST00000496826 HERC4Q5GLZ8 1057 aaPredicted RBP6.42□□□□□ -1.38
USF3-204ENST00000496826 SEL1L2Q5TEA6 688 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 TPTE2Q6XPS3 522 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 NAPBQ9H115 298 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 MRGBPQ9NV56 204 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 DACT1Q9NYF0 836 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 UVRAGQ9P2Y5 699 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 CAPZA2P47755 286 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 VPS41P49754 854 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 ARHGDIBP52566 201 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 CHMP4BP1P59074 171 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 ABCE1P61221 599 aaKnown RBP6.42□□□□□ -1.38
USF3-204ENST00000496826 IGBP1P78318 339 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 DRP2Q13474 957 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 PRKG1Q13976 671 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 C1orf228Q6PIY5 440 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 SERTAD1Q9UHV2 236 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 MID2Q9UJV3 735 aa6.42□□□□□ -1.38
USF3-204ENST00000496826 ANGPT2O15123 496 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 ORC4O43929 436 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 PGM3O95394 542 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 HLA-DOAP06340 250 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 MMEP08473 750 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 RAD23BP54727 409 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 CSE1LP55060 971 aaKnown RBP6.41□□□□□ -1.38
USF3-204ENST00000496826 RPGRQ92834 1020 aaKnown RBP6.41□□□□□ -1.38
USF3-204ENST00000496826 GPBP1L1Q9HC44 474 aaPredicted RBP6.41□□□□□ -1.38
USF3-204ENST00000496826 SFMBT1Q9UHJ3 866 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 CHP2O43745 196 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 GCKP35557 465 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 GARSP41250 739 aaKnown RBP6.41□□□□□ -1.38
USF3-204ENST00000496826 ANKRD20A3Q5VUR7 823 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 NBPF6Q5VWK0 638 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 RASSF6Q6ZTQ3 369 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 NUDCD3Q8IVD9 361 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 EFHD2Q96C19 240 aaPredicted RBP6.41□□□□□ -1.38
USF3-204ENST00000496826 NBPF4Q96M43 638 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 SH3GL2Q99962 352 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 KRT82Q9NSB4 513 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 ANAPC5Q9UJX4 755 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 GGA1Q9UJY5 639 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 MCM5P33992 734 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 HNRNPH2P55795 449 aaKnown RBP6.41□□□□□ -1.38
USF3-204ENST00000496826 AP3B2Q13367 1082 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 SV2BQ7L1I2 683 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 GDAP1Q8TB36 358 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 ATP5HO75947 161 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 TROVE2P10155 538 aaKnown RBP eCLIP6.41□□□□□ -1.38
USF3-204ENST00000496826 IBSPP21815 317 aaPredicted RBP6.41□□□□□ -1.38
USF3-204ENST00000496826 PTPN9P43378 593 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 SPARCL1Q14515 664 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 GJC2Q5T442 439 aaPredicted RBP6.41□□□□□ -1.38
USF3-204ENST00000496826 FBXO42Q6P3S6 717 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 ATAD3AQ9NVI7 634 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 PSME1Q06323 249 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 ITGADQ13349 1161 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 SPOUT1Q5T280 376 aaKnown RBP6.41□□□□□ -1.38
USF3-204ENST00000496826 COG3Q96JB2 828 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 DHX36Q9H2U1 1008 aaKnown RBP6.41□□□□□ -1.38
USF3-204ENST00000496826 KDM1AO60341 852 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 CES1P23141 567 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 ATN1P54259 1190 aaPredicted RBP6.41□□□□□ -1.38
USF3-204ENST00000496826 MRPS15P82914 257 aaKnown RBP6.41□□□□□ -1.38
USF3-204ENST00000496826 MTERF2Q49AM1 385 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 ANKRD13AQ8IZ07 590 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 FSTL5Q8N475 847 aaPredicted RBP6.41□□□□□ -1.38
USF3-204ENST00000496826 SNX29Q8TEQ0 813 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 CLCC1Q96S66 551 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 VPS11Q9H270 941 aa6.41□□□□□ -1.38
USF3-204ENST00000496826 CAB39Q9Y376 341 aaPredicted RBP6.41□□□□□ -1.38
USF3-204ENST00000496826 MIA2Q96PC5 1412 aa6.4□□□□□ -1.38
USF3-204ENST00000496826 KRT2P35908 639 aa6.4□□□□□ -1.38
USF3-204ENST00000496826 RAD51AP2Q09MP3 1159 aa6.4□□□□□ -1.38
USF3-204ENST00000496826 PLS1Q14651 629 aa6.4□□□□□ -1.38
USF3-204ENST00000496826 HIF1AQ16665 826 aa6.4□□□□□ -1.38
USF3-204ENST00000496826 PPP1R2P3Q6NXS1 205 aa6.4□□□□□ -1.38
USF3-204ENST00000496826 HORMAD1Q86X24 394 aa6.4□□□□□ -1.38
USF3-204ENST00000496826 SMC5Q8IY18 1101 aa6.4□□□□□ -1.38
USF3-204ENST00000496826 KIRREL3Q8IZU9 778 aa6.4□□□□□ -1.38
USF3-204ENST00000496826 CATSPER1Q8NEC5 780 aa6.4□□□□□ -1.38
USF3-204ENST00000496826 HOMER3Q9NSC5 361 aa6.4□□□□□ -1.38
USF3-204ENST00000496826 EIF2S3P41091 472 aaKnown RBP6.4□□□□□ -1.38
USF3-204ENST00000496826 CLNS1AP54105 237 aaKnown RBP6.4□□□□□ -1.38
USF3-204ENST00000496826 MMRN1Q13201 1228 aa6.4□□□□□ -1.38
USF3-204ENST00000496826 BFSP2Q13515 415 aa6.4□□□□□ -1.38
USF3-204ENST00000496826 RIC3Q7Z5B4 369 aa6.4□□□□□ -1.38
USF3-204ENST00000496826 CSGALNACT2Q8N6G5 542 aa6.4□□□□□ -1.38
USF3-204ENST00000496826 ZNF280CQ8ND82 737 aa6.4□□□□□ -1.38
USF3-204ENST00000496826 ARMC2Q8NEN0 867 aa6.4□□□□□ -1.38
USF3-204ENST00000496826 TEKT4Q8WW24 435 aa6.4□□□□□ -1.38
USF3-204ENST00000496826 RSPH1Q8WYR4 309 aa6.4□□□□□ -1.38
USF3-204ENST00000496826 N4BP2L2Q92802 583 aaPredicted RBP6.4□□□□□ -1.38
USF3-204ENST00000496826 ZNF496Q96IT1 587 aaPredicted RBP6.4□□□□□ -1.38
USF3-204ENST00000496826 RIPOR2Q9Y4F9 1068 aa6.4□□□□□ -1.38
USF3-204ENST00000496826 PDE6BP35913 854 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms