RNA–Protein interactions for RNA: ENST00000496445.5

VTI1A-209, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 853 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-209ENST00000496445 SALL3Q9BXA9 1300 aa17.16■□□□□ 0.34
VTI1A-209ENST00000496445 GSG1L2A8MUP6 293 aa17.15■□□□□ 0.34
VTI1A-209ENST00000496445 M0R2C6 588 aa17.15■□□□□ 0.34
VTI1A-209ENST00000496445 RNF113AO15541 343 aaKnown RBP17.15■□□□□ 0.34
VTI1A-209ENST00000496445 FARP2O94887 1054 aaPredicted RBP17.15■□□□□ 0.34
VTI1A-209ENST00000496445 ICA1Q05084 483 aa17.15■□□□□ 0.34
VTI1A-209ENST00000496445 PLEKHH3Q7Z736 793 aa17.15■□□□□ 0.34
VTI1A-209ENST00000496445 AMOTL1Q8IY63 956 aa17.15■□□□□ 0.34
VTI1A-209ENST00000496445 NUDT12Q9BQG2 462 aa17.15■□□□□ 0.34
VTI1A-209ENST00000496445 CRISPLD2Q9H0B8 497 aa17.15■□□□□ 0.34
VTI1A-209ENST00000496445 EPB41L4AQ9HCS5 686 aaPredicted RBP17.15■□□□□ 0.34
VTI1A-209ENST00000496445 MYH4Q9Y623 1939 aa17.14■□□□□ 0.33
VTI1A-209ENST00000496445 MAP3K21Q5TCX8 1036 aa17.14■□□□□ 0.33
VTI1A-209ENST00000496445 DDRGK1Q96HY6 314 aa17.14■□□□□ 0.33
VTI1A-209ENST00000496445 TMX2Q9Y320 296 aa17.14■□□□□ 0.33
VTI1A-209ENST00000496445 GPAA1O43292 621 aa17.13■□□□□ 0.33
VTI1A-209ENST00000496445 ZFYP08048 801 aaPredicted RBP17.13■□□□□ 0.33
VTI1A-209ENST00000496445 XRCC5P13010 732 aaKnown RBP17.13■□□□□ 0.33
VTI1A-209ENST00000496445 RGS2P41220 211 aa17.13■□□□□ 0.33
VTI1A-209ENST00000496445 CCL14Q16627 93 aa17.13■□□□□ 0.33
VTI1A-209ENST00000496445 SBK1Q52WX2 424 aa17.13■□□□□ 0.33
VTI1A-209ENST00000496445 CCDC17Q96LX7 622 aa17.13■□□□□ 0.33
VTI1A-209ENST00000496445 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.13■□□□□ 0.33
VTI1A-209ENST00000496445 VCPKMTQ9H867 229 aa17.13■□□□□ 0.33
VTI1A-209ENST00000496445 ARHGEF10LQ9HCE6 1279 aa17.13■□□□□ 0.33
VTI1A-209ENST00000496445 RPTORQ8N122 1335 aa17.13■□□□□ 0.33
VTI1A-209ENST00000496445 H0YGN5 161 aa17.12■□□□□ 0.33
VTI1A-209ENST00000496445 TFRCP02786 760 aaKnown RBP17.12■□□□□ 0.33
VTI1A-209ENST00000496445 PRKAR2AP13861 404 aaKnown RBP17.12■□□□□ 0.33
VTI1A-209ENST00000496445 ZKSCAN1P17029 563 aaPredicted RBP17.12■□□□□ 0.33
VTI1A-209ENST00000496445 MX1P20591 662 aa17.12■□□□□ 0.33
VTI1A-209ENST00000496445 CCNA1P78396 465 aa17.12■□□□□ 0.33
VTI1A-209ENST00000496445 GIMAP6Q6P9H5 292 aa17.12■□□□□ 0.33
VTI1A-209ENST00000496445 CCAR1Q8IX12 1150 aaKnown RBP17.12■□□□□ 0.33
VTI1A-209ENST00000496445 SPICE1Q8N0Z3 855 aa17.12■□□□□ 0.33
VTI1A-209ENST00000496445 DIS3LQ8TF46 1054 aaKnown RBP17.12■□□□□ 0.33
VTI1A-209ENST00000496445 LPAR1Q92633 364 aa17.12■□□□□ 0.33
VTI1A-209ENST00000496445 GCC1Q96CN9 775 aa17.12■□□□□ 0.33
VTI1A-209ENST00000496445 APBA2Q99767 749 aa17.12■□□□□ 0.33
VTI1A-209ENST00000496445 TANGO6Q9C0B7 1094 aa17.12■□□□□ 0.33
VTI1A-209ENST00000496445 DNAH12Q6ZR08 3092 aa17.12■□□□□ 0.33
VTI1A-209ENST00000496445 LAMA3Q16787 3333 aa17.11■□□□□ 0.33
VTI1A-209ENST00000496445 ERC2O15083 957 aa17.11■□□□□ 0.33
VTI1A-209ENST00000496445 GLRX3O76003 335 aaKnown RBP17.11■□□□□ 0.33
VTI1A-209ENST00000496445 EEF2P13639 858 aaKnown RBP17.11■□□□□ 0.33
VTI1A-209ENST00000496445 SEC62Q99442 399 aaKnown RBP17.11■□□□□ 0.33
VTI1A-209ENST00000496445 SH2D4AQ9H788 454 aa17.11■□□□□ 0.33
VTI1A-209ENST00000496445 HMX1Q9NP08 348 aaPredicted RBP17.11■□□□□ 0.33
VTI1A-209ENST00000496445 RASA1P20936 1047 aa17.1■□□□□ 0.33
VTI1A-209ENST00000496445 PTPREP23469 700 aa17.1■□□□□ 0.33
VTI1A-209ENST00000496445 DSG3P32926 999 aa17.1■□□□□ 0.33
VTI1A-209ENST00000496445 CACNB2Q08289 660 aaPredicted RBP17.1■□□□□ 0.33
VTI1A-209ENST00000496445 MAP2K5Q13163 448 aa17.1■□□□□ 0.33
VTI1A-209ENST00000496445 GRB14Q14449 540 aa17.1■□□□□ 0.33
VTI1A-209ENST00000496445 COG2Q14746 738 aa17.1■□□□□ 0.33
VTI1A-209ENST00000496445 HABP4Q5JVS0 413 aaKnown RBP17.1■□□□□ 0.33
VTI1A-209ENST00000496445 WDR78Q5VTH9 848 aa17.1■□□□□ 0.33
VTI1A-209ENST00000496445 TRMT44Q8IYL2 757 aaKnown RBP17.1■□□□□ 0.33
VTI1A-209ENST00000496445 STK11IPQ8N1F8 1099 aa17.1■□□□□ 0.33
VTI1A-209ENST00000496445 FSD1Q9BTV5 496 aa17.1■□□□□ 0.33
VTI1A-209ENST00000496445 MOV10L1Q9BXT6 1211 aaKnown RBP17.1■□□□□ 0.33
VTI1A-209ENST00000496445 CWC22Q9HCG8 908 aaKnown RBP17.1■□□□□ 0.33
VTI1A-209ENST00000496445 FLRT1Q9NZU1 646 aa17.1■□□□□ 0.33
VTI1A-209ENST00000496445 SLC15A5A6NIM6 579 aa17.09■□□□□ 0.33
VTI1A-209ENST00000496445 MINDY4BA8MYZ0 360 aa17.09■□□□□ 0.33
VTI1A-209ENST00000496445 WDR46O15213 610 aaKnown RBP17.09■□□□□ 0.33
VTI1A-209ENST00000496445 FLOT1O75955 427 aa17.09■□□□□ 0.33
VTI1A-209ENST00000496445 CAPN2P17655 700 aa17.09■□□□□ 0.33
VTI1A-209ENST00000496445 GNAT2P19087 354 aa17.09■□□□□ 0.33
VTI1A-209ENST00000496445 MNX1P50219 401 aaPredicted RBP17.09■□□□□ 0.33
VTI1A-209ENST00000496445 HDAC1Q13547 482 aaPredicted RBP17.09■□□□□ 0.33
VTI1A-209ENST00000496445 ZMYM1Q5SVZ6 1142 aa17.09■□□□□ 0.33
VTI1A-209ENST00000496445 DPF3Q92784 378 aa17.09■□□□□ 0.33
VTI1A-209ENST00000496445 ATG4CQ96DT6 458 aa17.09■□□□□ 0.33
VTI1A-209ENST00000496445 HTATIP2Q9BUP3 242 aa17.09■□□□□ 0.33
VTI1A-209ENST00000496445 SPATC1LQ9H0A9 340 aa17.09■□□□□ 0.33
VTI1A-209ENST00000496445 KANSL2Q9H9L4 492 aa17.09■□□□□ 0.33
VTI1A-209ENST00000496445 ZNFX1Q9P2E3 1918 aaKnown RBP17.08■□□□□ 0.33
VTI1A-209ENST00000496445 PLXNA1Q9UIW2 1896 aa17.08■□□□□ 0.33
VTI1A-209ENST00000496445 CCND3P30281 292 aaPredicted RBP17.08■□□□□ 0.32
VTI1A-209ENST00000496445 TDO2P48775 406 aa17.08■□□□□ 0.32
VTI1A-209ENST00000496445 ATP2B2Q01814 1243 aa17.08■□□□□ 0.32
VTI1A-209ENST00000496445 C1QBPQ07021 282 aaKnown RBP17.08■□□□□ 0.32
VTI1A-209ENST00000496445 ANKRD45Q5TZF3 282 aa17.08■□□□□ 0.32
VTI1A-209ENST00000496445 IFNL3Q8IZI9 196 aa17.08■□□□□ 0.32
VTI1A-209ENST00000496445 PAWRQ96IZ0 340 aaKnown RBP17.08■□□□□ 0.32
VTI1A-209ENST00000496445 HOXC10Q9NYD6 342 aa17.08■□□□□ 0.32
VTI1A-209ENST00000496445 OGDHLQ9ULD0 1010 aa17.08■□□□□ 0.32
VTI1A-209ENST00000496445 COLQQ9Y215 455 aaPredicted RBP17.08■□□□□ 0.32
VTI1A-209ENST00000496445 TRIOBPQ9H2D6 2365 aa17.08■□□□□ 0.32
VTI1A-209ENST00000496445 IGKV6D-41A0A0C4DH26 115 aa17.07■□□□□ 0.32
VTI1A-209ENST00000496445 PATL2C9JE40 543 aaKnown RBP17.07■□□□□ 0.32
VTI1A-209ENST00000496445 IGHA2P01877 340 aa17.07■□□□□ 0.32
VTI1A-209ENST00000496445 HOXC6P09630 235 aa17.07■□□□□ 0.32
VTI1A-209ENST00000496445 ERCC3P19447 782 aa17.07■□□□□ 0.32
VTI1A-209ENST00000496445 LRRFIP1Q32MZ4 808 aaKnown RBP17.07■□□□□ 0.32
VTI1A-209ENST00000496445 MB21D1Q8N884 522 aa17.07■□□□□ 0.32
VTI1A-209ENST00000496445 ANKLE1Q8NAG6 615 aa17.07■□□□□ 0.32
VTI1A-209ENST00000496445 NPLOC4Q8TAT6 608 aa17.07■□□□□ 0.32
VTI1A-209ENST00000496445 FBXO28Q9NVF7 368 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms