RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 ZMYM1Q5SVZ6 1142 aa18.8■□□□□ 0.6
HDAC4-213ENST00000496347 POTEEQ6S8J3 1075 aa18.8■□□□□ 0.6
HDAC4-213ENST00000496347 TICAM2Q86XR7 235 aa18.8■□□□□ 0.6
HDAC4-213ENST00000496347 CLEC10AQ8IUN9 316 aa18.8■□□□□ 0.6
HDAC4-213ENST00000496347 CCAR1Q8IX12 1150 aaKnown RBP18.8■□□□□ 0.6
HDAC4-213ENST00000496347 SMC5Q8IY18 1101 aa18.8■□□□□ 0.6
HDAC4-213ENST00000496347 EVI5LQ96CN4 794 aa18.8■□□□□ 0.6
HDAC4-213ENST00000496347 NUDT12Q9BQG2 462 aa18.8■□□□□ 0.6
HDAC4-213ENST00000496347 TANGO6Q9C0B7 1094 aa18.8■□□□□ 0.6
HDAC4-213ENST00000496347 ZNF287Q9HBT7 754 aa18.8■□□□□ 0.6
HDAC4-213ENST00000496347 WDR46O15213 610 aaKnown RBP18.79■□□□□ 0.6
HDAC4-213ENST00000496347 XRCC5P13010 732 aaKnown RBP18.79■□□□□ 0.6
HDAC4-213ENST00000496347 GPR142Q7Z601 462 aa18.79■□□□□ 0.6
HDAC4-213ENST00000496347 UNC93B1Q9H1C4 597 aa18.79■□□□□ 0.6
HDAC4-213ENST00000496347 PORCNQ9H237 461 aa18.79■□□□□ 0.6
HDAC4-213ENST00000496347 VCPKMTQ9H867 229 aa18.79■□□□□ 0.6
HDAC4-213ENST00000496347 PAK6Q9NQU5 681 aaPredicted RBP18.79■□□□□ 0.6
HDAC4-213ENST00000496347 PLIN4Q96Q06 1357 aa18.79■□□□□ 0.6
HDAC4-213ENST00000496347 PEX10O60683 326 aa18.78■□□□□ 0.6
HDAC4-213ENST00000496347 CNMDO75829 334 aa18.78■□□□□ 0.6
HDAC4-213ENST00000496347 APPP05067 770 aa18.78■□□□□ 0.6
HDAC4-213ENST00000496347 RASA1P20936 1047 aa18.78■□□□□ 0.6
HDAC4-213ENST00000496347 SIAH1Q8IUQ4 282 aa18.78■□□□□ 0.6
HDAC4-213ENST00000496347 TRMT44Q8IYL2 757 aaKnown RBP18.78■□□□□ 0.6
HDAC4-213ENST00000496347 MB21D1Q8N884 522 aa18.78■□□□□ 0.6
HDAC4-213ENST00000496347 APBA2Q99767 749 aa18.78■□□□□ 0.6
HDAC4-213ENST00000496347 GOPCQ9HD26 462 aa18.78■□□□□ 0.6
HDAC4-213ENST00000496347 COL11A1P12107 1806 aaPredicted RBP18.78■□□□□ 0.6
HDAC4-213ENST00000496347 MINDY4BA8MYZ0 360 aa18.77■□□□□ 0.6
HDAC4-213ENST00000496347 PATL2C9JE40 543 aaKnown RBP18.77■□□□□ 0.6
HDAC4-213ENST00000496347 RGS2P41220 211 aa18.77■□□□□ 0.6
HDAC4-213ENST00000496347 COG2Q14746 738 aa18.77■□□□□ 0.6
HDAC4-213ENST00000496347 PLEKHH3Q7Z736 793 aa18.77■□□□□ 0.6
HDAC4-213ENST00000496347 U2AF1L4Q8WU68 220 aaKnown RBP18.77■□□□□ 0.6
HDAC4-213ENST00000496347 LNPKQ9C0E8 428 aa18.77■□□□□ 0.6
HDAC4-213ENST00000496347 NAPBQ9H115 298 aa18.77■□□□□ 0.6
HDAC4-213ENST00000496347 MKNK2Q9HBH9 465 aa18.77■□□□□ 0.6
HDAC4-213ENST00000496347 CWC22Q9HCG8 908 aaKnown RBP18.77■□□□□ 0.6
HDAC4-213ENST00000496347 HOXC10Q9NYD6 342 aa18.77■□□□□ 0.6
HDAC4-213ENST00000496347 EEF2P13639 858 aaKnown RBP18.76■□□□□ 0.59
HDAC4-213ENST00000496347 ZKSCAN1P17029 563 aaPredicted RBP18.76■□□□□ 0.59
HDAC4-213ENST00000496347 Q3C1V9 767 aa18.76■□□□□ 0.59
HDAC4-213ENST00000496347 MORN1Q5T089 497 aa18.76■□□□□ 0.59
HDAC4-213ENST00000496347 IFNL3Q8IZI9 196 aa18.76■□□□□ 0.59
HDAC4-213ENST00000496347 SPICE1Q8N0Z3 855 aa18.76■□□□□ 0.59
HDAC4-213ENST00000496347 TRIB2Q92519 343 aa18.76■□□□□ 0.59
HDAC4-213ENST00000496347 USP6NLQ92738 828 aa18.76■□□□□ 0.59
HDAC4-213ENST00000496347 SEC62Q99442 399 aaKnown RBP18.76■□□□□ 0.59
HDAC4-213ENST00000496347 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.76■□□□□ 0.59
HDAC4-213ENST00000496347 FRMPD3Q5JV73 1810 aa18.75■□□□□ 0.59
HDAC4-213ENST00000496347 FLOT1O75955 427 aa18.75■□□□□ 0.59
HDAC4-213ENST00000496347 SLC3A2P08195 630 aaKnown RBP18.75■□□□□ 0.59
HDAC4-213ENST00000496347 KIAA1755Q5JYT7 1200 aa18.75■□□□□ 0.59
HDAC4-213ENST00000496347 UBE2Q1Q7Z7E8 422 aa18.75■□□□□ 0.59
HDAC4-213ENST00000496347 EXOC6Q8TAG9 804 aa18.75■□□□□ 0.59
HDAC4-213ENST00000496347 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.75■□□□□ 0.59
HDAC4-213ENST00000496347 BTBD7Q9P203 1132 aa18.75■□□□□ 0.59
HDAC4-213ENST00000496347 SYNPO2Q9UMS6 1093 aa18.75■□□□□ 0.59
HDAC4-213ENST00000496347 IVNS1ABPQ9Y6Y0 642 aa18.75■□□□□ 0.59
HDAC4-213ENST00000496347 SGPL1O95470 568 aa18.74■□□□□ 0.59
HDAC4-213ENST00000496347 CYP2B6P20813 491 aa18.74■□□□□ 0.59
HDAC4-213ENST00000496347 ATP2B2Q01814 1243 aa18.74■□□□□ 0.59
HDAC4-213ENST00000496347 NUCB1Q02818 461 aa18.74■□□□□ 0.59
HDAC4-213ENST00000496347 PDE4BQ07343 736 aa18.74■□□□□ 0.59
HDAC4-213ENST00000496347 GRB14Q14449 540 aa18.74■□□□□ 0.59
HDAC4-213ENST00000496347 MAP3K21Q5TCX8 1036 aa18.74■□□□□ 0.59
HDAC4-213ENST00000496347 CHD1LQ86WJ1 897 aa18.74■□□□□ 0.59
HDAC4-213ENST00000496347 SHCBP1Q8NEM2 672 aa18.74■□□□□ 0.59
HDAC4-213ENST00000496347 RPTORQ8N122 1335 aa18.74■□□□□ 0.59
HDAC4-213ENST00000496347 LAMA4Q16363 1823 aa18.73■□□□□ 0.59
HDAC4-213ENST00000496347 SLC15A5A6NIM6 579 aa18.73■□□□□ 0.59
HDAC4-213ENST00000496347 FARP2O94887 1054 aaPredicted RBP18.73■□□□□ 0.59
HDAC4-213ENST00000496347 DSG3P32926 999 aa18.73■□□□□ 0.59
HDAC4-213ENST00000496347 MAP2K5Q13163 448 aa18.73■□□□□ 0.59
HDAC4-213ENST00000496347 DEFB118Q96PH6 123 aa18.73■□□□□ 0.59
HDAC4-213ENST00000496347 SPATC1LQ9H0A9 340 aa18.73■□□□□ 0.59
HDAC4-213ENST00000496347 CRISPLD2Q9H0B8 497 aa18.73■□□□□ 0.59
HDAC4-213ENST00000496347 HELLSQ9NRZ9 838 aa18.73■□□□□ 0.59
HDAC4-213ENST00000496347 NYAP2Q9P242 653 aa18.73■□□□□ 0.59
HDAC4-213ENST00000496347 IGKV6D-41A0A0C4DH26 115 aa18.72■□□□□ 0.59
HDAC4-213ENST00000496347 FOXP2O15409 715 aa18.72■□□□□ 0.59
HDAC4-213ENST00000496347 HOXC6P09630 235 aa18.72■□□□□ 0.59
HDAC4-213ENST00000496347 PRKAR2AP13861 404 aaKnown RBP18.72■□□□□ 0.59
HDAC4-213ENST00000496347 PPARAQ07869 468 aa18.72■□□□□ 0.59
HDAC4-213ENST00000496347 WDR78Q5VTH9 848 aa18.72■□□□□ 0.59
HDAC4-213ENST00000496347 OSBPL3Q9H4L5 887 aa18.72■□□□□ 0.59
HDAC4-213ENST00000496347 HMX1Q9NP08 348 aaPredicted RBP18.72■□□□□ 0.59
HDAC4-213ENST00000496347 ZMYM6O95789 1325 aa18.72■□□□□ 0.59
HDAC4-213ENST00000496347 RANBP2P49792 3224 aaKnown RBP18.72■□□□□ 0.59
HDAC4-213ENST00000496347 PTPREP23469 700 aa18.71■□□□□ 0.59
HDAC4-213ENST00000496347 CCDC129Q6ZRS4 1044 aa18.71■□□□□ 0.59
HDAC4-213ENST00000496347 ZNF444Q8N0Y2 327 aaPredicted RBP18.71■□□□□ 0.59
HDAC4-213ENST00000496347 ATG4CQ96DT6 458 aa18.71■□□□□ 0.59
HDAC4-213ENST00000496347 MOV10L1Q9BXT6 1211 aaKnown RBP18.71■□□□□ 0.59
HDAC4-213ENST00000496347 PRDM1O75626 825 aa18.7■□□□□ 0.58
HDAC4-213ENST00000496347 IGHDP01880 384 aa18.7■□□□□ 0.58
HDAC4-213ENST00000496347 PPP4R3BQ5MIZ7 849 aa18.7■□□□□ 0.58
HDAC4-213ENST00000496347 B4GALNT3Q6L9W6 998 aa18.7■□□□□ 0.58
HDAC4-213ENST00000496347 STK11IPQ8N1F8 1099 aa18.7■□□□□ 0.58
HDAC4-213ENST00000496347 HTATIP2Q9BUP3 242 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms