RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 KLHL10Q6JEL2 608 aa10.9□□□□□ -0.66
SYNE1-230ENST00000495090 ZNF572Q7Z3I7 529 aaPredicted RBP10.9□□□□□ -0.66
SYNE1-230ENST00000495090 AENQ8WTP8 325 aaKnown RBP10.9□□□□□ -0.66
SYNE1-230ENST00000495090 ZNF594Q96JF6 807 aaPredicted RBP10.9□□□□□ -0.66
SYNE1-230ENST00000495090 DNAJC7Q99615 494 aa10.9□□□□□ -0.66
SYNE1-230ENST00000495090 SH3GL2Q99962 352 aa10.9□□□□□ -0.66
SYNE1-230ENST00000495090 SLF1Q9BQI6 1058 aa10.9□□□□□ -0.66
SYNE1-230ENST00000495090 TACO1Q9BSH4 297 aaKnown RBP10.9□□□□□ -0.66
SYNE1-230ENST00000495090 PUS3Q9BZE2 481 aaKnown RBP10.9□□□□□ -0.66
SYNE1-230ENST00000495090 KAT14Q9H8E8 782 aa10.9□□□□□ -0.66
SYNE1-230ENST00000495090 FAM169AQ9Y6X4 670 aa10.9□□□□□ -0.66
SYNE1-230ENST00000495090 SHTN1A0MZ66 631 aa10.9□□□□□ -0.67
SYNE1-230ENST00000495090 GOLGA6BA6NDN3 693 aa10.9□□□□□ -0.67
SYNE1-230ENST00000495090 TRIM75PA6NK02 468 aa10.9□□□□□ -0.67
SYNE1-230ENST00000495090 CLSTN1O94985 981 aa10.9□□□□□ -0.67
SYNE1-230ENST00000495090 TATP17735 454 aaPredicted RBP10.9□□□□□ -0.67
SYNE1-230ENST00000495090 STX17P56962 302 aa10.9□□□□□ -0.67
SYNE1-230ENST00000495090 SKOR1P84550 965 aa10.9□□□□□ -0.67
SYNE1-230ENST00000495090 RTN1Q16799 776 aa10.9□□□□□ -0.67
SYNE1-230ENST00000495090 CCDC57Q2TAC2 916 aa10.9□□□□□ -0.67
SYNE1-230ENST00000495090 TCP11X2Q5H9J9 407 aa10.9□□□□□ -0.67
SYNE1-230ENST00000495090 CCDC70Q6NSX1 233 aa10.9□□□□□ -0.67
SYNE1-230ENST00000495090 CNPY4Q8N129 248 aa10.9□□□□□ -0.67
SYNE1-230ENST00000495090 OR8K1Q8NGG5 319 aa10.9□□□□□ -0.67
SYNE1-230ENST00000495090 MMS19Q96T76 1030 aa10.9□□□□□ -0.67
SYNE1-230ENST00000495090 A1CFQ9NQ94 594 aaKnown RBP10.9□□□□□ -0.67
SYNE1-230ENST00000495090 DENND2AQ9ULE3 1009 aa10.9□□□□□ -0.67
SYNE1-230ENST00000495090 MYH8P13535 1937 aa10.89□□□□□ -0.67
SYNE1-230ENST00000495090 COL22A1Q8NFW1 1626 aaPredicted RBP10.89□□□□□ -0.67
SYNE1-230ENST00000495090 A0A087X0B3 334 aa10.89□□□□□ -0.67
SYNE1-230ENST00000495090 PPP2R5BQ15173 497 aa10.89□□□□□ -0.67
SYNE1-230ENST00000495090 MEA1Q16626 185 aa10.89□□□□□ -0.67
SYNE1-230ENST00000495090 USP49Q70CQ1 688 aa10.89□□□□□ -0.67
SYNE1-230ENST00000495090 TMTC2Q8N394 836 aa10.89□□□□□ -0.67
SYNE1-230ENST00000495090 FNBP4Q8N3X1 1017 aaPredicted RBP10.89□□□□□ -0.67
SYNE1-230ENST00000495090 CRACR2BQ8N4Y2 399 aaPredicted RBP10.89□□□□□ -0.67
SYNE1-230ENST00000495090 NKX2-3Q8TAU0 364 aa10.89□□□□□ -0.67
SYNE1-230ENST00000495090 PLA2G12BQ9BX93 195 aa10.89□□□□□ -0.67
SYNE1-230ENST00000495090 CAPS2Q9BXY5 557 aa10.89□□□□□ -0.67
SYNE1-230ENST00000495090 KRT23Q9C075 422 aa10.89□□□□□ -0.67
SYNE1-230ENST00000495090 GUCA1BQ9UMX6 200 aa10.89□□□□□ -0.67
SYNE1-230ENST00000495090 CTNND2Q9UQB3 1225 aa10.89□□□□□ -0.67
SYNE1-230ENST00000495090 AXIN2Q9Y2T1 843 aa10.89□□□□□ -0.67
SYNE1-230ENST00000495090 AKAP11Q9UKA4 1901 aa10.89□□□□□ -0.67
SYNE1-230ENST00000495090 TRPM3Q9HCF6 1732 aaPredicted RBP10.89□□□□□ -0.67
SYNE1-230ENST00000495090 GRIN2DO15399 1336 aa10.89□□□□□ -0.67
SYNE1-230ENST00000495090 IFIT3O14879 490 aaKnown RBP10.88□□□□□ -0.67
SYNE1-230ENST00000495090 KRT86O43790 486 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 OPA1O60313 960 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 ZEB2O60315 1214 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 ATP1A1P05023 1023 aaKnown RBP10.88□□□□□ -0.67
SYNE1-230ENST00000495090 GUCY1A2P33402 732 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 CCT6AP40227 531 aaKnown RBP10.88□□□□□ -0.67
SYNE1-230ENST00000495090 CCT5P48643 541 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 PAK1Q13153 545 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 B4GALNT4Q76KP1 1039 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 MMGT1Q8N4V1 131 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 KAT2BQ92831 832 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 JAKMIP2Q96AA8 810 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 PURBQ96QR8 312 aaKnown RBP10.88□□□□□ -0.67
SYNE1-230ENST00000495090 PAGR1Q9BTK6 254 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 PLEKHA4Q9H4M7 779 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 RMND1Q9NWS8 449 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 KCNJ14Q9UNX9 436 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 RIC1Q4ADV7 1423 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 MEGF6O75095 1541 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 DCAF8L1A6NGE4 600 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 NBPF26B4DH59 902 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 KCNJ18B7U540 433 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 ANKRD65E5RJM6 399 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 H7C1D1 291 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 RNF225M0QZC1 329 aaPredicted RBP10.88□□□□□ -0.67
SYNE1-230ENST00000495090 HNRNPH1P31943 449 aaKnown RBP10.88□□□□□ -0.67
SYNE1-230ENST00000495090 MCAMP43121 646 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 AFMP43652 599 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 HERVK_113P62684 666 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 SEMA3FQ13275 785 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 NR5A1Q13285 461 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 KCNJ12Q14500 433 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 SART3Q15020 963 aaKnown RBP10.88□□□□□ -0.67
SYNE1-230ENST00000495090 HSP90AB3PQ58FF7 597 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 ESCO1Q5FWF5 840 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 CCDC122Q5T0U0 273 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 ALS2CLQ60I27 953 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 NBPF10Q6P3W6 841 aaKnown RBP10.88□□□□□ -0.67
SYNE1-230ENST00000495090 ANKLE2Q86XL3 938 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 CCDC170Q8IYT3 715 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 NBPF15Q8N660 670 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 PRPF38AQ8NAV1 312 aaKnown RBP10.88□□□□□ -0.67
SYNE1-230ENST00000495090 SYMPKQ92797 1274 aaKnown RBP10.88□□□□□ -0.67
SYNE1-230ENST00000495090 ZBTB9Q96C00 473 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 CHP1Q99653 195 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 MYL10Q9BUA6 226 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 RNF26Q9BY78 433 aaPredicted RBP10.88□□□□□ -0.67
SYNE1-230ENST00000495090 ZSWIM5Q9P217 1185 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 CAPN11Q9UMQ6 739 aa10.88□□□□□ -0.67
SYNE1-230ENST00000495090 CHD4Q14839 1912 aa10.87□□□□□ -0.67
SYNE1-230ENST00000495090 LOC102724159A0A0B4J2E5 919 aa10.87□□□□□ -0.67
SYNE1-230ENST00000495090 LGALS16A8MUM7 142 aa10.87□□□□□ -0.67
SYNE1-230ENST00000495090 UBE2Q2LH0YL09 131 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms