RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 PHF20Q9BVI0 1012 aa18.84■□□□□ 0.61
CCDC88B-210ENST00000494566 SRPRBQ9Y5M8 271 aaKnown RBP18.84■□□□□ 0.61
CCDC88B-210ENST00000494566 TRIM75PA6NK02 468 aa18.83■□□□□ 0.61
CCDC88B-210ENST00000494566 TSPY2A6NKD2 308 aa18.83■□□□□ 0.61
CCDC88B-210ENST00000494566 ETF1P62495 437 aaKnown RBP18.83■□□□□ 0.61
CCDC88B-210ENST00000494566 SLC10A5Q5PT55 438 aa18.83■□□□□ 0.61
CCDC88B-210ENST00000494566 DZIP1Q86YF9 867 aaKnown RBP18.83■□□□□ 0.61
CCDC88B-210ENST00000494566 NEK11Q8NG66 645 aa18.83■□□□□ 0.61
CCDC88B-210ENST00000494566 CNTNAP4Q9C0A0 1308 aa18.83■□□□□ 0.6
CCDC88B-210ENST00000494566 RPS6KA4O75676 772 aa18.83■□□□□ 0.6
CCDC88B-210ENST00000494566 CRNKL1Q9BZJ0 848 aaKnown RBP18.83■□□□□ 0.6
CCDC88B-210ENST00000494566 TM4SF1P30408 202 aa18.82■□□□□ 0.6
CCDC88B-210ENST00000494566 TPTE2Q6XPS3 522 aa18.82■□□□□ 0.6
CCDC88B-210ENST00000494566 SMARCE1Q969G3 411 aa18.82■□□□□ 0.6
CCDC88B-210ENST00000494566 NOL10Q9BSC4 688 aaKnown RBP18.82■□□□□ 0.6
CCDC88B-210ENST00000494566 RTCBQ9Y3I0 505 aaKnown RBP18.82■□□□□ 0.6
CCDC88B-210ENST00000494566 NFE2L3Q9Y4A8 694 aa18.82■□□□□ 0.6
CCDC88B-210ENST00000494566 ACTN4O43707 911 aaKnown RBP18.82■□□□□ 0.6
CCDC88B-210ENST00000494566 NPY5RQ15761 445 aa18.82■□□□□ 0.6
CCDC88B-210ENST00000494566 TMTC3Q6ZXV5 915 aa18.82■□□□□ 0.6
CCDC88B-210ENST00000494566 RASGRP2Q7LDG7 609 aa18.82■□□□□ 0.6
CCDC88B-210ENST00000494566 SYMPKQ92797 1274 aaKnown RBP18.82■□□□□ 0.6
CCDC88B-210ENST00000494566 MED15Q96RN5 788 aa18.82■□□□□ 0.6
CCDC88B-210ENST00000494566 PUF60Q9UHX1 559 aaKnown RBP18.82■□□□□ 0.6
CCDC88B-210ENST00000494566 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.82■□□□□ 0.6
CCDC88B-210ENST00000494566 VWA3AA6NCI4 1184 aa18.81■□□□□ 0.6
CCDC88B-210ENST00000494566 SYCP1Q15431 976 aa18.81■□□□□ 0.6
CCDC88B-210ENST00000494566 SLC44A5Q8NCS7 719 aa18.81■□□□□ 0.6
CCDC88B-210ENST00000494566 RGS22Q8NE09 1264 aa18.81■□□□□ 0.6
CCDC88B-210ENST00000494566 GPKOWQ92917 476 aaPredicted RBP eCLIP18.81■□□□□ 0.6
CCDC88B-210ENST00000494566 NYXQ9GZU5 481 aa18.81■□□□□ 0.6
CCDC88B-210ENST00000494566 IMPACTQ9P2X3 320 aa18.81■□□□□ 0.6
CCDC88B-210ENST00000494566 FHOD1Q9Y613 1164 aa18.81■□□□□ 0.6
CCDC88B-210ENST00000494566 CNTNAP5Q8WYK1 1306 aa18.81■□□□□ 0.6
CCDC88B-210ENST00000494566 PRPF3O43395 683 aaKnown RBP18.81■□□□□ 0.6
CCDC88B-210ENST00000494566 PNMA6AP0CW24 399 aaPredicted RBP18.81■□□□□ 0.6
CCDC88B-210ENST00000494566 TRIM65Q6PJ69 517 aa18.81■□□□□ 0.6
CCDC88B-210ENST00000494566 PIK3AP1Q6ZUJ8 805 aa18.81■□□□□ 0.6
CCDC88B-210ENST00000494566 VGLL3A8MV65 326 aa18.8■□□□□ 0.6
CCDC88B-210ENST00000494566 XBP1P17861 261 aa18.8■□□□□ 0.6
CCDC88B-210ENST00000494566 CTCFLQ8NI51 663 aaPredicted RBP18.8■□□□□ 0.6
CCDC88B-210ENST00000494566 RASGRP4Q8TDF6 673 aa18.8■□□□□ 0.6
CCDC88B-210ENST00000494566 LTBP4Q8N2S1 1624 aa18.8■□□□□ 0.6
CCDC88B-210ENST00000494566 CDC25AP30304 524 aa18.8■□□□□ 0.6
CCDC88B-210ENST00000494566 SH3RF3Q8TEJ3 882 aaPredicted RBP18.8■□□□□ 0.6
CCDC88B-210ENST00000494566 RNF216Q9NWF9 866 aaPredicted RBP18.8■□□□□ 0.6
CCDC88B-210ENST00000494566 SAP30BPQ9UHR5 308 aaKnown RBP18.8■□□□□ 0.6
CCDC88B-210ENST00000494566 PPP2R2CQ9Y2T4 447 aa18.8■□□□□ 0.6
CCDC88B-210ENST00000494566 REXO1L1PQ8IX06 675 aa18.8■□□□□ 0.6
CCDC88B-210ENST00000494566 STAG2Q8N3U4 1231 aa18.8■□□□□ 0.6
CCDC88B-210ENST00000494566 MTA3Q9BTC8 594 aa18.8■□□□□ 0.6
CCDC88B-210ENST00000494566 USP17L3A6NCW0 530 aa18.79■□□□□ 0.6
CCDC88B-210ENST00000494566 USP17L4A6NCW7 530 aa18.79■□□□□ 0.6
CCDC88B-210ENST00000494566 SOWAHDA6NJG2 315 aa18.79■□□□□ 0.6
CCDC88B-210ENST00000494566 TEX33O43247 280 aa18.79■□□□□ 0.6
CCDC88B-210ENST00000494566 PLA2G4AP47712 749 aa18.79■□□□□ 0.6
CCDC88B-210ENST00000494566 TMCO3Q6UWJ1 677 aa18.79■□□□□ 0.6
CCDC88B-210ENST00000494566 USP17L1Q7RTZ2 530 aa18.79■□□□□ 0.6
CCDC88B-210ENST00000494566 CEP131Q9UPN4 1083 aa18.79■□□□□ 0.6
CCDC88B-210ENST00000494566 MCM7P33993 719 aa18.79■□□□□ 0.6
CCDC88B-210ENST00000494566 USP5P45974 858 aa18.79■□□□□ 0.6
CCDC88B-210ENST00000494566 NLRP5P59047 1200 aa18.79■□□□□ 0.6
CCDC88B-210ENST00000494566 ST5P78524 1137 aa18.79■□□□□ 0.6
CCDC88B-210ENST00000494566 TFAP4Q01664 338 aa18.79■□□□□ 0.6
CCDC88B-210ENST00000494566 PTGDRQ13258 359 aa18.79■□□□□ 0.6
CCDC88B-210ENST00000494566 CPVLQ9H3G5 476 aa18.79■□□□□ 0.6
CCDC88B-210ENST00000494566 RFC4P35249 363 aa18.78■□□□□ 0.6
CCDC88B-210ENST00000494566 RCAN1P53805 252 aa18.78■□□□□ 0.6
CCDC88B-210ENST00000494566 RCSD1Q6JBY9 416 aa18.78■□□□□ 0.6
CCDC88B-210ENST00000494566 BAG1Q99933 345 aaPredicted RBP18.78■□□□□ 0.6
CCDC88B-210ENST00000494566 ANKRD2Q9GZV1 360 aa18.78■□□□□ 0.6
CCDC88B-210ENST00000494566 BLZF1Q9H2G9 400 aa18.78■□□□□ 0.6
CCDC88B-210ENST00000494566 MAPK8IP1Q9UQF2 711 aa18.78■□□□□ 0.6
CCDC88B-210ENST00000494566 FGRP09769 529 aa18.78■□□□□ 0.6
CCDC88B-210ENST00000494566 TTC38Q5R3I4 469 aa18.78■□□□□ 0.6
CCDC88B-210ENST00000494566 GPIHBP1Q8IV16 184 aa18.78■□□□□ 0.6
CCDC88B-210ENST00000494566 VSTM4Q8IW00 320 aa18.78■□□□□ 0.6
CCDC88B-210ENST00000494566 EEF2KMTQ96G04 330 aa18.78■□□□□ 0.6
CCDC88B-210ENST00000494566 RBM28Q9NW13 759 aaKnown RBP18.78■□□□□ 0.6
CCDC88B-210ENST00000494566 GABPB1Q06547 395 aaPredicted RBP18.77■□□□□ 0.6
CCDC88B-210ENST00000494566 MORC3Q14149 939 aa18.77■□□□□ 0.6
CCDC88B-210ENST00000494566 VPS72Q15906 364 aa18.77■□□□□ 0.6
CCDC88B-210ENST00000494566 CCDC93Q567U6 631 aa18.77■□□□□ 0.6
CCDC88B-210ENST00000494566 WWC2Q6AWC2 1192 aa18.77■□□□□ 0.6
CCDC88B-210ENST00000494566 L2HGDHQ9H9P8 463 aa18.77■□□□□ 0.6
CCDC88B-210ENST00000494566 IL17RBQ9NRM6 502 aa18.77■□□□□ 0.6
CCDC88B-210ENST00000494566 TNRC6CQ9HCJ0 1690 aaKnown RBP18.77■□□□□ 0.6
CCDC88B-210ENST00000494566 CD44P16070 742 aaKnown RBP18.77■□□□□ 0.6
CCDC88B-210ENST00000494566 H2AFXP16104 143 aaPredicted RBP18.77■□□□□ 0.6
CCDC88B-210ENST00000494566 CASQ1P31415 396 aa18.77■□□□□ 0.6
CCDC88B-210ENST00000494566 SARSP49591 514 aaKnown RBP18.77■□□□□ 0.6
CCDC88B-210ENST00000494566 SKIDA1Q1XH10 827 aa18.77■□□□□ 0.6
CCDC88B-210ENST00000494566 FAM196AQ6ZSG2 479 aa18.77■□□□□ 0.6
CCDC88B-210ENST00000494566 CCDC12Q8WUD4 166 aaPredicted RBP18.77■□□□□ 0.6
CCDC88B-210ENST00000494566 TGFBRAP1Q8WUH2 860 aa18.77■□□□□ 0.6
CCDC88B-210ENST00000494566 PODXL2Q9NZ53 605 aa18.77■□□□□ 0.6
CCDC88B-210ENST00000494566 HOOK1Q9UJC3 728 aaKnown RBP18.77■□□□□ 0.6
CCDC88B-210ENST00000494566 PARP3Q9Y6F1 533 aa18.77■□□□□ 0.6
CCDC88B-210ENST00000494566 BTAF1O14981 1849 aa18.77■□□□□ 0.6
CCDC88B-210ENST00000494566 PSDA5PKW4 1024 aaPredicted RBP18.77■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms