RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 CTNND2Q9UQB3 1225 aa18.24■□□□□ 0.51
CCDC88B-209ENST00000494080 CHGBP05060 677 aa18.24■□□□□ 0.51
CCDC88B-209ENST00000494080 FCHSD1Q86WN1 690 aa18.24■□□□□ 0.51
CCDC88B-209ENST00000494080 CCDC42Q96M95 316 aa18.24■□□□□ 0.51
CCDC88B-209ENST00000494080 AIFM3Q96NN9 605 aa18.24■□□□□ 0.51
CCDC88B-209ENST00000494080 ARPP21Q9UBL0 812 aaPredicted RBP18.24■□□□□ 0.51
CCDC88B-209ENST00000494080 TNS3Q68CZ2 1445 aa18.24■□□□□ 0.51
CCDC88B-209ENST00000494080 MACROD2A1Z1Q3 448 aa18.24■□□□□ 0.51
CCDC88B-209ENST00000494080 NEFHP12036 1026 aa18.24■□□□□ 0.51
CCDC88B-209ENST00000494080 MRPL12P52815 198 aaKnown RBP18.24■□□□□ 0.51
CCDC88B-209ENST00000494080 CFAP58Q5T655 872 aa18.24■□□□□ 0.51
CCDC88B-209ENST00000494080 BANK1Q8NDB2 785 aa18.24■□□□□ 0.51
CCDC88B-209ENST00000494080 GOLGA6BA6NDN3 693 aa18.23■□□□□ 0.51
CCDC88B-209ENST00000494080 GOLGA8HP0CJ92 632 aa18.23■□□□□ 0.51
CCDC88B-209ENST00000494080 POTEDQ86YR6 584 aa18.23■□□□□ 0.51
CCDC88B-209ENST00000494080 CNKSR2Q8WXI2 1034 aa18.23■□□□□ 0.51
CCDC88B-209ENST00000494080 CARMIL3Q8ND23 1372 aa18.23■□□□□ 0.51
CCDC88B-209ENST00000494080 FRMPD1Q5SYB0 1578 aa18.23■□□□□ 0.51
CCDC88B-209ENST00000494080 VWDEQ8N2E2 1590 aa18.23■□□□□ 0.51
CCDC88B-209ENST00000494080 APBA3O96018 575 aa18.23■□□□□ 0.51
CCDC88B-209ENST00000494080 ZNF827Q17R98 1081 aa18.23■□□□□ 0.51
CCDC88B-209ENST00000494080 B4GALNT4Q76KP1 1039 aa18.23■□□□□ 0.51
CCDC88B-209ENST00000494080 PNMA1Q8ND90 353 aa18.23■□□□□ 0.51
CCDC88B-209ENST00000494080 GJB4Q9NTQ9 266 aa18.23■□□□□ 0.51
CCDC88B-209ENST00000494080 ANKRD65E5RJM6 399 aa18.23■□□□□ 0.51
CCDC88B-209ENST00000494080 ZYXQ15942 572 aaKnown RBP18.23■□□□□ 0.51
CCDC88B-209ENST00000494080 MLKLQ8NB16 471 aa18.23■□□□□ 0.51
CCDC88B-209ENST00000494080 SLF1Q9BQI6 1058 aa18.23■□□□□ 0.51
CCDC88B-209ENST00000494080 PARD6BQ9BYG5 372 aa18.23■□□□□ 0.51
CCDC88B-209ENST00000494080 MED23Q9ULK4 1368 aa18.23■□□□□ 0.51
CCDC88B-209ENST00000494080 CYP2D7A0A087X1C5 515 aa18.23■□□□□ 0.51
CCDC88B-209ENST00000494080 PPARDQ03181 441 aa18.23■□□□□ 0.51
CCDC88B-209ENST00000494080 BLZF1Q9H2G9 400 aa18.23■□□□□ 0.51
CCDC88B-209ENST00000494080 ZSWIM5Q9P217 1185 aa18.23■□□□□ 0.51
CCDC88B-209ENST00000494080 PREX1Q8TCU6 1659 aa18.22■□□□□ 0.51
CCDC88B-209ENST00000494080 ERCC3P19447 782 aa18.22■□□□□ 0.51
CCDC88B-209ENST00000494080 EXOC4Q96A65 974 aa18.22■□□□□ 0.51
CCDC88B-209ENST00000494080 FAN1Q9Y2M0 1017 aa18.22■□□□□ 0.51
CCDC88B-209ENST00000494080 JRKLQ9Y4A0 524 aa18.22■□□□□ 0.51
CCDC88B-209ENST00000494080 KRT9P35527 623 aa18.22■□□□□ 0.51
CCDC88B-209ENST00000494080 TOB2Q14106 344 aaPredicted RBP18.22■□□□□ 0.51
CCDC88B-209ENST00000494080 E2F4Q16254 413 aa18.22■□□□□ 0.51
CCDC88B-209ENST00000494080 PLA2G4DQ86XP0 818 aa18.22■□□□□ 0.51
CCDC88B-209ENST00000494080 ATP10DQ9P241 1426 aa18.22■□□□□ 0.51
CCDC88B-209ENST00000494080 PDE4DQ08499 809 aa18.22■□□□□ 0.51
CCDC88B-209ENST00000494080 SCNN1DP51172 638 aa18.22■□□□□ 0.51
CCDC88B-209ENST00000494080 DOK7Q18PE1 504 aa18.22■□□□□ 0.51
CCDC88B-209ENST00000494080 SLC1A4P43007 532 aa18.21■□□□□ 0.51
CCDC88B-209ENST00000494080 GPKOWQ92917 476 aaPredicted RBP eCLIP18.21■□□□□ 0.51
CCDC88B-209ENST00000494080 EFCC1Q9HA90 598 aa18.21■□□□□ 0.51
CCDC88B-209ENST00000494080 PALLDQ8WX93 1383 aa18.21■□□□□ 0.51
CCDC88B-209ENST00000494080 CTIFO43310 598 aaKnown RBP18.21■□□□□ 0.51
CCDC88B-209ENST00000494080 NAA25Q14CX7 972 aa18.21■□□□□ 0.51
CCDC88B-209ENST00000494080 NONOQ15233 471 aaKnown RBP eCLIP18.21■□□□□ 0.51
CCDC88B-209ENST00000494080 PHLPP2Q6ZVD8 1323 aa18.21■□□□□ 0.51
CCDC88B-209ENST00000494080 PLCD1P51178 756 aa18.21■□□□□ 0.51
CCDC88B-209ENST00000494080 SND1Q7KZF4 910 aaKnown RBP eCLIP18.21■□□□□ 0.51
CCDC88B-209ENST00000494080 JDP2Q8WYK2 163 aa18.21■□□□□ 0.51
CCDC88B-209ENST00000494080 ADAM21Q9UKJ8 722 aa18.21■□□□□ 0.51
CCDC88B-209ENST00000494080 CETN1Q12798 172 aa18.2■□□□□ 0.5
CCDC88B-209ENST00000494080 TBC1D22AQ8WUA7 517 aa18.2■□□□□ 0.5
CCDC88B-209ENST00000494080 INCENPQ9NQS7 918 aa18.2■□□□□ 0.5
CCDC88B-209ENST00000494080 CMA1P23946 247 aa18.2■□□□□ 0.5
CCDC88B-209ENST00000494080 RBM6P78332 1123 aaKnown RBP18.2■□□□□ 0.5
CCDC88B-209ENST00000494080 SV2BQ7L1I2 683 aa18.2■□□□□ 0.5
CCDC88B-209ENST00000494080 FAM204AQ9H8W3 233 aa18.2■□□□□ 0.5
CCDC88B-209ENST00000494080 USP40Q9NVE5 1235 aa18.2■□□□□ 0.5
CCDC88B-209ENST00000494080 FOXO4P98177 505 aa18.2■□□□□ 0.5
CCDC88B-209ENST00000494080 STXBP4Q6ZWJ1 553 aa18.2■□□□□ 0.5
CCDC88B-209ENST00000494080 TMTC1Q8IUR5 882 aa18.2■□□□□ 0.5
CCDC88B-209ENST00000494080 IL25Q9H293 177 aa18.2■□□□□ 0.5
CCDC88B-209ENST00000494080 PLEKHA4Q9H4M7 779 aa18.2■□□□□ 0.5
CCDC88B-209ENST00000494080 CYP19A1P11511 503 aaPredicted RBP18.2■□□□□ 0.5
CCDC88B-209ENST00000494080 HPDP32754 393 aaPredicted RBP18.2■□□□□ 0.5
CCDC88B-209ENST00000494080 TRAF1Q13077 416 aa18.2■□□□□ 0.5
CCDC88B-209ENST00000494080 CPLX4Q7Z7G2 160 aa18.2■□□□□ 0.5
CCDC88B-209ENST00000494080 TTC14Q96N46 770 aa18.2■□□□□ 0.5
CCDC88B-209ENST00000494080 PKD2L1Q9P0L9 805 aa18.2■□□□□ 0.5
CCDC88B-209ENST00000494080 GOLGA6L10A0A0M3HER8 536 aa18.19■□□□□ 0.5
CCDC88B-209ENST00000494080 CCDC151A5D8V7 595 aa18.19■□□□□ 0.5
CCDC88B-209ENST00000494080 H0YIN7 160 aa18.19■□□□□ 0.5
CCDC88B-209ENST00000494080 CLGNO14967 610 aa18.19■□□□□ 0.5
CCDC88B-209ENST00000494080 PRPF4BQ13523 1007 aaKnown RBP18.19■□□□□ 0.5
CCDC88B-209ENST00000494080 SCARF1Q14162 830 aa18.19■□□□□ 0.5
CCDC88B-209ENST00000494080 CYP26C1Q6V0L0 522 aa18.19■□□□□ 0.5
CCDC88B-209ENST00000494080 ARFGAP2Q8N6H7 521 aa18.19■□□□□ 0.5
CCDC88B-209ENST00000494080 BCAS4Q8TDM0 211 aa18.19■□□□□ 0.5
CCDC88B-209ENST00000494080 ISCA1Q9BUE6 129 aa18.19■□□□□ 0.5
CCDC88B-209ENST00000494080 CD163L1Q9NR16 1453 aa18.19■□□□□ 0.5
CCDC88B-209ENST00000494080 RCOR1Q9UKL0 485 aa18.19■□□□□ 0.5
CCDC88B-209ENST00000494080 TECPR2O15040 1411 aa18.19■□□□□ 0.5
CCDC88B-209ENST00000494080 BICDL2A1A5D9 508 aa18.19■□□□□ 0.5
CCDC88B-209ENST00000494080 SRGAP1Q7Z6B7 1085 aa18.19■□□□□ 0.5
CCDC88B-209ENST00000494080 KIAA0825Q8IV33 1275 aa18.19■□□□□ 0.5
CCDC88B-209ENST00000494080 FERMT2Q96AC1 680 aa18.19■□□□□ 0.5
CCDC88B-209ENST00000494080 SYNRGQ9UMZ2 1314 aa18.19■□□□□ 0.5
CCDC88B-209ENST00000494080 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.19■□□□□ 0.5
CCDC88B-209ENST00000494080 BTDP43251 543 aa18.19■□□□□ 0.5
CCDC88B-209ENST00000494080 FAM71BQ8TC56 605 aa18.19■□□□□ 0.5
CCDC88B-209ENST00000494080 EPC1Q9H2F5 836 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms