RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 GOLGA5Q8TBA6 731 aa12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 CLSTN2Q9H4D0 955 aa12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 CEP131Q9UPN4 1083 aa12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 EBAG9O00559 213 aa12.12□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 PPIP5K2O43314 1243 aa12.12□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 TUBB4AP04350 444 aa12.12□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 PRR5LQ6MZQ0 368 aa12.12□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 KRI1Q8N9T8 703 aaKnown RBP12.12□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 CERKQ8TCT0 537 aa12.12□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 BIN2Q9UBW5 565 aaPredicted RBP12.12□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 FMN2Q9NZ56 1722 aa12.12□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 RGPD2P0DJD1 1756 aa12.12□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 AKAP12Q02952 1782 aa12.12□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 C21orf2O43822 256 aa12.12□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 CHMP4BP1P59074 171 aa12.12□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 PPFIBP1Q86W92 1011 aa12.12□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 AMIGO3Q86WK7 504 aa12.12□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 LARGE2Q8N3Y3 721 aa12.12□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 OGFOD1Q8N543 542 aa12.12□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 PCDHB6Q9Y5E3 794 aa12.12□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.12□□□□□ -0.474e-8■■□□□ 12.5
MSH5-SAPCD1-207ENST00000493662 MED1Q15648 1581 aaPredicted RBP12.12□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 BCL9O00512 1426 aa12.12□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 UBASH3AP57075 661 aa12.12□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 INF2Q27J81 1249 aa12.12□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 RASGRP2Q7LDG7 609 aa12.12□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 GOLGA1Q92805 767 aa12.12□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 CCDC47Q96A33 483 aaKnown RBP12.12□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 ZMYM6O95789 1325 aa12.12□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 KIF5CO60282 957 aa12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 GDF11O95390 407 aa12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 TXKP42681 527 aa12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 BRAPQ7Z569 592 aa12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 SLF2Q8IX21 1173 aa12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 CACTINQ8WUQ7 758 aaKnown RBP12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 SERTAD1Q9UHV2 236 aa12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 XDHP47989 1333 aa12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 PXDNLA1KZ92 1463 aa12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 POTEB2H3BUK9 544 aa12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 CCT6AP40227 531 aaKnown RBP12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 KIF23Q02241 960 aaPredicted RBP12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 GRAPQ13588 217 aa12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 DPCR1Q3MIW9 517 aa12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 WDR78Q5VTH9 848 aa12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 RRAGBQ5VZM2 374 aa12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 NOSTRINQ8IVI9 506 aa12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 GRAPLQ8TC17 118 aaPredicted RBP12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 GOLPH3LQ9H4A5 285 aa12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 PPEF1O14829 653 aaPredicted RBP12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 ZBTB7AO95365 584 aa12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 SP4Q02446 784 aa12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 DNAJC21Q5F1R6 531 aaKnown RBP12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 RNF216Q9NWF9 866 aaPredicted RBP12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 SETD1AO15047 1707 aaKnown RBP12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 PARP1P09874 1014 aaKnown RBP12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 NWD1Q149M9 1564 aa12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 KNDC1Q76NI1 1749 aa12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 ENAHQ8N8S7 591 aaPredicted RBP12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 DCP1AQ9NPI6 582 aaPredicted RBP12.11□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 EPB41L2O43491 1005 aaKnown RBP12.1□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 PNMA6AP0CW24 399 aaPredicted RBP12.1□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 FDPSP14324 419 aaKnown RBP12.1□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 STAT6P42226 847 aa12.1□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 EXOSC10Q01780 885 aaKnown RBP12.1□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 PPP2R3AQ06190 1150 aa12.1□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 ARID5BQ14865 1188 aa12.1□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 MAP9Q49MG5 647 aa12.1□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 KCTD1Q719H9 257 aa12.1□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 LRRC4BQ9NT99 713 aa12.1□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 DCCP43146 1447 aa12.1□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 KLRF2D3W0D1 207 aa12.1□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 CCNT1O60563 726 aaKnown RBP12.1□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 ARID4AP29374 1257 aaPredicted RBP12.1□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 CLCN6P51797 869 aa12.1□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 DEFB132Q7Z7B7 95 aa12.1□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 LY9Q9HBG7 655 aa12.1□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 CD209Q9NNX6 404 aa12.1□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 ABCC12Q96J65 1359 aa12.1□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 JCADQ9P266 1359 aa12.1□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 TRIM66O15016 1216 aa12.1□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 RXRBP28702 533 aa12.1□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 MIGA2Q7L4E1 593 aa12.1□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 CEP57Q86XR8 500 aa12.1□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 HOMER2Q9NSB8 354 aa12.1□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 STK32BQ9NY57 414 aa12.1□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 GOLGA6L9A6NEM1 432 aa12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 FOXN1O15353 648 aa12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 SEC31AO94979 1220 aaKnown RBP12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 EPSTI1Q96J88 318 aa12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 POLD4Q9HCU8 107 aa12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 CALM1P0DP23 149 aa12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 CALM2P0DP24 149 aa12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 CALM3P0DP25 149 aa12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 GRIK5Q16478 980 aa12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 TTC38Q5R3I4 469 aa12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 LRRC8AQ8IWT6 810 aa12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 CPXCR1Q8N123 301 aa12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 COA7Q96BR5 231 aa12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 PLA2G12BQ9BX93 195 aa12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 TCP11L1Q9NUJ3 509 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms