RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 KDM3BQ7LBC6 1761 aa13.14□□□□□ -0.31
HDAC4-210ENST00000493582 TTC26A0AVF1 554 aa13.14□□□□□ -0.31
HDAC4-210ENST00000493582 OPA1O60313 960 aa13.14□□□□□ -0.31
HDAC4-210ENST00000493582 LRRC24Q50LG9 513 aa13.14□□□□□ -0.31
HDAC4-210ENST00000493582 NFXL1Q6ZNB6 911 aa13.14□□□□□ -0.31
HDAC4-210ENST00000493582 ZNF594Q96JF6 807 aaPredicted RBP13.14□□□□□ -0.31
HDAC4-210ENST00000493582 INCENPQ9NQS7 918 aa13.14□□□□□ -0.31
HDAC4-210ENST00000493582 HEG1Q9ULI3 1381 aa13.13□□□□□ -0.31
HDAC4-210ENST00000493582 MED1Q15648 1581 aaPredicted RBP13.13□□□□□ -0.31
HDAC4-210ENST00000493582 MACROD2A1Z1Q3 448 aa13.13□□□□□ -0.31
HDAC4-210ENST00000493582 COPB1P53618 953 aaKnown RBP13.13□□□□□ -0.31
HDAC4-210ENST00000493582 IFT88Q13099 833 aa13.13□□□□□ -0.31
HDAC4-210ENST00000493582 CCDC40Q4G0X9 1142 aa13.13□□□□□ -0.31
HDAC4-210ENST00000493582 PREPLQ4J6C6 727 aaPredicted RBP13.13□□□□□ -0.31
HDAC4-210ENST00000493582 NAA35Q5VZE5 725 aa13.13□□□□□ -0.31
HDAC4-210ENST00000493582 KIAA1328Q86T90 577 aa13.13□□□□□ -0.31
HDAC4-210ENST00000493582 KIRREL3Q8IZU9 778 aa13.13□□□□□ -0.31
HDAC4-210ENST00000493582 RUFY1Q96T51 708 aa13.13□□□□□ -0.31
HDAC4-210ENST00000493582 FAM217BQ9NTX9 383 aaPredicted RBP13.13□□□□□ -0.31
HDAC4-210ENST00000493582 FRMD3A2A2Y4 597 aa13.13□□□□□ -0.31
HDAC4-210ENST00000493582 ZBTB43O43298 467 aa13.13□□□□□ -0.31
HDAC4-210ENST00000493582 NEBLO76041 1014 aa13.13□□□□□ -0.31
HDAC4-210ENST00000493582 SSBP05455 408 aaKnown RBP eCLIP13.13□□□□□ -0.31
HDAC4-210ENST00000493582 IDEP14735 1019 aa13.13□□□□□ -0.31
HDAC4-210ENST00000493582 NAP1L1P55209 391 aaKnown RBP13.13□□□□□ -0.31
HDAC4-210ENST00000493582 SKOR1P84550 965 aa13.13□□□□□ -0.31
HDAC4-210ENST00000493582 UBXN1Q04323 297 aa13.13□□□□□ -0.31
HDAC4-210ENST00000493582 SF3B2Q13435 895 aaKnown RBP13.13□□□□□ -0.31
HDAC4-210ENST00000493582 CMTR1Q8N1G2 835 aaKnown RBP13.13□□□□□ -0.31
HDAC4-210ENST00000493582 PAGE5Q96GU1 130 aa13.13□□□□□ -0.31
HDAC4-210ENST00000493582 RNPC3Q96LT9 517 aaKnown RBP13.13□□□□□ -0.31
HDAC4-210ENST00000493582 DNAJC5Q9H3Z4 198 aa13.13□□□□□ -0.31
HDAC4-210ENST00000493582 MAPK8IP1Q9UQF2 711 aa13.13□□□□□ -0.31
HDAC4-210ENST00000493582 TSPOAP1O95153 1857 aa13.13□□□□□ -0.31
HDAC4-210ENST00000493582 B4E1Z4 1266 aa13.12□□□□□ -0.31
HDAC4-210ENST00000493582 PES1O00541 588 aaKnown RBP13.12□□□□□ -0.31
HDAC4-210ENST00000493582 LSP1P33241 339 aa13.12□□□□□ -0.31
HDAC4-210ENST00000493582 APBA1Q02410 837 aa13.12□□□□□ -0.31
HDAC4-210ENST00000493582 NNTQ13423 1086 aa13.12□□□□□ -0.31
HDAC4-210ENST00000493582 IQCA1Q86XH1 822 aa13.12□□□□□ -0.31
HDAC4-210ENST00000493582 CCDC13Q8IYE1 715 aa13.12□□□□□ -0.31
HDAC4-210ENST00000493582 SLC24A3Q9HC58 644 aa13.12□□□□□ -0.31
HDAC4-210ENST00000493582 SRPRBQ9Y5M8 271 aaKnown RBP13.12□□□□□ -0.31
HDAC4-210ENST00000493582 CPDO75976 1380 aa13.12□□□□□ -0.31
HDAC4-210ENST00000493582 PIK3C2AO00443 1686 aa13.12□□□□□ -0.31
HDAC4-210ENST00000493582 GOLGA8AA7E2F4 631 aa13.12□□□□□ -0.31
HDAC4-210ENST00000493582 HDGFP51858 240 aaKnown RBP13.12□□□□□ -0.31
HDAC4-210ENST00000493582 CEP85LQ5SZL2 805 aa13.12□□□□□ -0.31
HDAC4-210ENST00000493582 LRCH2Q5VUJ6 765 aa13.12□□□□□ -0.31
HDAC4-210ENST00000493582 CYB5RLQ6IPT4 315 aa13.12□□□□□ -0.31
HDAC4-210ENST00000493582 FAXDC2Q96IV6 333 aa13.12□□□□□ -0.31
HDAC4-210ENST00000493582 PSMB7Q99436 277 aa13.12□□□□□ -0.31
HDAC4-210ENST00000493582 BLZF1Q9H2G9 400 aa13.12□□□□□ -0.31
HDAC4-210ENST00000493582 ESF1Q9H501 851 aaKnown RBP13.12□□□□□ -0.31
HDAC4-210ENST00000493582 SMARCAL1Q9NZC9 954 aa13.12□□□□□ -0.31
HDAC4-210ENST00000493582 SH2B2O14492 632 aaPredicted RBP13.12□□□□□ -0.31
HDAC4-210ENST00000493582 PDHBP11177 359 aa13.12□□□□□ -0.31
HDAC4-210ENST00000493582 TTF1Q15361 905 aaPredicted RBP13.12□□□□□ -0.31
HDAC4-210ENST00000493582 WDR59Q6PJI9 974 aa13.12□□□□□ -0.31
HDAC4-210ENST00000493582 TBC1D10CQ8IV04 446 aa13.12□□□□□ -0.31
HDAC4-210ENST00000493582 OR8K1Q8NGG5 319 aa13.12□□□□□ -0.31
HDAC4-210ENST00000493582 OXER1Q8TDS5 423 aa13.12□□□□□ -0.31
HDAC4-210ENST00000493582 CABP5Q9NP86 173 aa13.12□□□□□ -0.31
HDAC4-210ENST00000493582 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.12□□□□□ -0.31
HDAC4-210ENST00000493582 OVOS2A0A0G2JMS6 1433 aa13.11□□□□□ -0.31
HDAC4-210ENST00000493582 KDM6AO15550 1401 aaPredicted RBP13.11□□□□□ -0.31
HDAC4-210ENST00000493582 LRRC10BA6NIK2 292 aa13.11□□□□□ -0.31
HDAC4-210ENST00000493582 SEMA3EO15041 775 aa13.11□□□□□ -0.31
HDAC4-210ENST00000493582 SMTNP53814 917 aa13.11□□□□□ -0.31
HDAC4-210ENST00000493582 SSRP1Q08945 709 aaKnown RBP13.11□□□□□ -0.31
HDAC4-210ENST00000493582 SAFBQ15424 915 aaKnown RBP eCLIP13.11□□□□□ -0.31
HDAC4-210ENST00000493582 CCDC70Q6NSX1 233 aa13.11□□□□□ -0.31
HDAC4-210ENST00000493582 PI16Q6UXB8 463 aa13.11□□□□□ -0.31
HDAC4-210ENST00000493582 ZIM3Q96PE6 472 aa13.11□□□□□ -0.31
HDAC4-210ENST00000493582 SLC40A1Q9NP59 571 aa13.11□□□□□ -0.31
HDAC4-210ENST00000493582 LIMA1Q9UHB6 759 aaKnown RBP13.11□□□□□ -0.31
HDAC4-210ENST00000493582 GPAA1O43292 621 aa13.11□□□□□ -0.31
HDAC4-210ENST00000493582 KRT86O43790 486 aa13.11□□□□□ -0.31
HDAC4-210ENST00000493582 HSF2BPO75031 334 aa13.11□□□□□ -0.31
HDAC4-210ENST00000493582 RASSF9O75901 435 aa13.11□□□□□ -0.31
HDAC4-210ENST00000493582 MMP1P03956 469 aa13.11□□□□□ -0.31
HDAC4-210ENST00000493582 CYP27A1Q02318 531 aa13.11□□□□□ -0.31
HDAC4-210ENST00000493582 RILPL1Q5EBL4 403 aa13.11□□□□□ -0.31
HDAC4-210ENST00000493582 RRAGBQ5VZM2 374 aa13.11□□□□□ -0.31
HDAC4-210ENST00000493582 SMCR8Q8TEV9 937 aaPredicted RBP13.11□□□□□ -0.31
HDAC4-210ENST00000493582 ZNF473Q8WTR7 871 aaKnown RBP13.11□□□□□ -0.31
HDAC4-210ENST00000493582 TACO1Q9BSH4 297 aaKnown RBP13.11□□□□□ -0.31
HDAC4-210ENST00000493582 VCPKMTQ9H867 229 aa13.11□□□□□ -0.31
HDAC4-210ENST00000493582 STRN4Q9NRL3 753 aa13.11□□□□□ -0.31
HDAC4-210ENST00000493582 LUC7L2Q9Y383 392 aaKnown RBP13.11□□□□□ -0.31
HDAC4-210ENST00000493582 MAP3K15Q6ZN16 1313 aa13.1□□□□□ -0.31
HDAC4-210ENST00000493582 KCNJ18B7U540 433 aa13.1□□□□□ -0.31
HDAC4-210ENST00000493582 HDLBPQ00341 1268 aaKnown RBP13.1□□□□□ -0.31
HDAC4-210ENST00000493582 SCARF1Q14162 830 aa13.1□□□□□ -0.31
HDAC4-210ENST00000493582 KCNJ12Q14500 433 aa13.1□□□□□ -0.31
HDAC4-210ENST00000493582 TCP11X2Q5H9J9 407 aa13.1□□□□□ -0.31
HDAC4-210ENST00000493582 CREG2Q8IUH2 290 aa13.1□□□□□ -0.31
HDAC4-210ENST00000493582 DHX37Q8IY37 1157 aaKnown RBP13.1□□□□□ -0.31
HDAC4-210ENST00000493582 ZNF579Q8NAF0 562 aaKnown RBP13.1□□□□□ -0.31
HDAC4-210ENST00000493582 IP6K1Q92551 441 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms