RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 BMP7P18075 431 aa8.13□□□□□ -1.11
SCN1A-206ENST00000491429 MEI1Q5TIA1 1274 aa8.13□□□□□ -1.11
SCN1A-206ENST00000491429 FAM13CQ8NE31 585 aa8.13□□□□□ -1.11
SCN1A-206ENST00000491429 DHX38Q92620 1227 aaKnown RBP8.13□□□□□ -1.11
SCN1A-206ENST00000491429 GCM1Q9NP62 436 aa8.13□□□□□ -1.11
SCN1A-206ENST00000491429 GPR160Q9UJ42 338 aa8.13□□□□□ -1.11
SCN1A-206ENST00000491429 PRPF40AO75400 957 aaKnown RBP8.12□□□□□ -1.11
SCN1A-206ENST00000491429 PLCG1P19174 1290 aa8.12□□□□□ -1.11
SCN1A-206ENST00000491429 PDE6BP35913 854 aa8.12□□□□□ -1.11
SCN1A-206ENST00000491429 RNF141Q8WVD5 230 aa8.12□□□□□ -1.11
SCN1A-206ENST00000491429 ZCCHC4Q9H5U6 513 aa8.12□□□□□ -1.11
SCN1A-206ENST00000491429 ZNF552Q9H707 407 aaPredicted RBP8.12□□□□□ -1.11
SCN1A-206ENST00000491429 SHISA3A0PJX4 238 aa8.11□□□□□ -1.11
SCN1A-206ENST00000491429 TEKQ02763 1124 aa8.11□□□□□ -1.11
SCN1A-206ENST00000491429 TMEM132EQ6IEE7 984 aa8.11□□□□□ -1.11
SCN1A-206ENST00000491429 RELTQ969Z4 430 aa8.11□□□□□ -1.11
SCN1A-206ENST00000491429 SHISA4Q96DD7 197 aa8.11□□□□□ -1.11
SCN1A-206ENST00000491429 CNOT6Q9ULM6 557 aaKnown RBP8.11□□□□□ -1.11
SCN1A-206ENST00000491429 A0A0G2JLL6 359 aaPredicted RBP8.1□□□□□ -1.11
SCN1A-206ENST00000491429 TEX51A0A1B0GUA7 166 aa8.1□□□□□ -1.11
SCN1A-206ENST00000491429 PSPNO60542 156 aa8.1□□□□□ -1.11
SCN1A-206ENST00000491429 YARSP54577 528 aaKnown RBP8.1□□□□□ -1.11
SCN1A-206ENST00000491429 DUSP9Q99956 384 aaKnown RBP8.1□□□□□ -1.11
SCN1A-206ENST00000491429 EFEMP2O95967 443 aa8.09□□□□□ -1.11
SCN1A-206ENST00000491429 SSPNQ14714 243 aa8.09□□□□□ -1.11
SCN1A-206ENST00000491429 BNC2Q6ZN30 1099 aaPredicted RBP8.09□□□□□ -1.11
SCN1A-206ENST00000491429 SPPL2CQ8IUH8 684 aa8.09□□□□□ -1.11
SCN1A-206ENST00000491429 SYTL4Q96C24 671 aaPredicted RBP8.09□□□□□ -1.11
SCN1A-206ENST00000491429 KCTD3Q9Y597 815 aa8.09□□□□□ -1.11
SCN1A-206ENST00000491429 RBM47A0AV96 593 aaKnown RBP8.08□□□□□ -1.12
SCN1A-206ENST00000491429 NOTOA8MTQ0 251 aa8.08□□□□□ -1.12
SCN1A-206ENST00000491429 CHRNEQ04844 493 aa8.08□□□□□ -1.12
SCN1A-206ENST00000491429 TMEM201Q5SNT2 666 aa8.08□□□□□ -1.12
SCN1A-206ENST00000491429 ANKS4BQ8N8V4 417 aa8.08□□□□□ -1.12
SCN1A-206ENST00000491429 PHC3Q8NDX5 983 aa8.08□□□□□ -1.12
SCN1A-206ENST00000491429 KREMEN1Q96MU8 473 aa8.08□□□□□ -1.12
SCN1A-206ENST00000491429 KCNC2Q96PR1 638 aa8.08□□□□□ -1.12
SCN1A-206ENST00000491429 G6PC3Q9BUM1 346 aa8.08□□□□□ -1.12
SCN1A-206ENST00000491429 F6X3S4 739 aa8.07□□□□□ -1.12
SCN1A-206ENST00000491429 TNNI2P48788 182 aa8.07□□□□□ -1.12
SCN1A-206ENST00000491429 DUSP4Q13115 394 aa8.07□□□□□ -1.12
SCN1A-206ENST00000491429 SNX17Q15036 470 aa8.07□□□□□ -1.12
SCN1A-206ENST00000491429 SIRT2Q8IXJ6 389 aa8.07□□□□□ -1.12
SCN1A-206ENST00000491429 SLFN12Q8IYM2 578 aa8.07□□□□□ -1.12
SCN1A-206ENST00000491429 LINC01599Q8WXQ3 324 aa8.07□□□□□ -1.12
SCN1A-206ENST00000491429 FOXD2O60548 495 aaPredicted RBP8.06□□□□□ -1.12
SCN1A-206ENST00000491429 TRIM13O60858 407 aa8.06□□□□□ -1.12
SCN1A-206ENST00000491429 CILPO75339 1184 aa8.06□□□□□ -1.12
SCN1A-206ENST00000491429 ZNF385BQ569K4 471 aa8.06□□□□□ -1.12
SCN1A-206ENST00000491429 TCERG1LQ5VWI1 586 aa8.06□□□□□ -1.12
SCN1A-206ENST00000491429 MARCH10Q8NA82 808 aaPredicted RBP8.06□□□□□ -1.12
SCN1A-206ENST00000491429 ZNF281Q9Y2X9 895 aa8.06□□□□□ -1.12
SCN1A-206ENST00000491429 FAM221AA4D161 298 aa8.05□□□□□ -1.12
SCN1A-206ENST00000491429 CHURC1-FNTBB4DL54 471 aa8.05□□□□□ -1.12
SCN1A-206ENST00000491429 RLBP1P12271 317 aa8.05□□□□□ -1.12
SCN1A-206ENST00000491429 PANK1Q8TE04 598 aa8.05□□□□□ -1.12
SCN1A-206ENST00000491429 ASPNQ9BXN1 380 aa8.05□□□□□ -1.12
SCN1A-206ENST00000491429 REV1Q9UBZ9 1251 aa8.05□□□□□ -1.12
SCN1A-206ENST00000491429 KLHL3Q9UH77 587 aa8.05□□□□□ -1.12
SCN1A-206ENST00000491429 USP2O75604 605 aaPredicted RBP8.04□□□□□ -1.12
SCN1A-206ENST00000491429 BPNT1O95861 308 aa8.04□□□□□ -1.12
SCN1A-206ENST00000491429 F13A1P00488 732 aa8.04□□□□□ -1.12
SCN1A-206ENST00000491429 KCNA1Q09470 495 aa8.04□□□□□ -1.12
SCN1A-206ENST00000491429 ADGRF1Q5T601 910 aa8.04□□□□□ -1.12
SCN1A-206ENST00000491429 NLRX1Q86UT6 975 aa8.04□□□□□ -1.12
SCN1A-206ENST00000491429 NOC4LQ9BVI4 516 aaKnown RBP8.04□□□□□ -1.12
SCN1A-206ENST00000491429 OR14I1A6ND48 311 aa8.03□□□□□ -1.12
SCN1A-206ENST00000491429 RFXAPO00287 272 aa8.03□□□□□ -1.12
SCN1A-206ENST00000491429 DNAJA2O60884 412 aa8.03□□□□□ -1.12
SCN1A-206ENST00000491429 PI3P19957 117 aa8.03□□□□□ -1.12
SCN1A-206ENST00000491429 CLEC16AQ2KHT3 1053 aa8.03□□□□□ -1.12
SCN1A-206ENST00000491429 CCDC84Q86UT8 332 aaPredicted RBP8.03□□□□□ -1.12
SCN1A-206ENST00000491429 MBD1Q9UIS9 605 aaPredicted RBP8.03□□□□□ -1.12
SCN1A-206ENST00000491429 TIMELESSQ9UNS1 1208 aa8.03□□□□□ -1.12
SCN1A-206ENST00000491429 JAG2Q9Y219 1238 aa8.03□□□□□ -1.12
SCN1A-206ENST00000491429 PRR36Q9H6K5 1346 aa8.03□□□□□ -1.12
SCN1A-206ENST00000491429 ADAMTS20P59510 1910 aa8.02□□□□□ -1.13
SCN1A-206ENST00000491429 GRIN3BO60391 1043 aa8.02□□□□□ -1.13
SCN1A-206ENST00000491429 RPL10P27635 214 aaKnown RBP8.02□□□□□ -1.13
SCN1A-206ENST00000491429 CAMK2GQ13555 558 aaPredicted RBP8.02□□□□□ -1.13
SCN1A-206ENST00000491429 TAF1CQ15572 869 aaPredicted RBP8.02□□□□□ -1.13
SCN1A-206ENST00000491429 GATAD2BQ8WXI9 593 aa8.02□□□□□ -1.13
SCN1A-206ENST00000491429 CCDC74BQ96LY2 380 aa8.02□□□□□ -1.13
SCN1A-206ENST00000491429 KIF2CQ99661 725 aa8.02□□□□□ -1.13
SCN1A-206ENST00000491429 POLR3KQ9Y2Y1 108 aaPredicted RBP8.02□□□□□ -1.13
SCN1A-206ENST00000491429 HTR3BO95264 441 aa8.01□□□□□ -1.13
SCN1A-206ENST00000491429 PF4P02776 101 aa8.01□□□□□ -1.13
SCN1A-206ENST00000491429 ST13P50502 369 aaKnown RBP8.01□□□□□ -1.13
SCN1A-206ENST00000491429 EPHB3P54753 998 aa8.01□□□□□ -1.13
SCN1A-206ENST00000491429 SRSF3P84103 164 aaKnown RBP8.01□□□□□ -1.13
SCN1A-206ENST00000491429 NFIXQ14938 502 aa8.01□□□□□ -1.13
SCN1A-206ENST00000491429 PHACTR4Q8IZ21 702 aa8.01□□□□□ -1.13
SCN1A-206ENST00000491429 USHBP1Q8N6Y0 703 aa8.01□□□□□ -1.13
SCN1A-206ENST00000491429 VWCEQ96DN2 955 aa8.01□□□□□ -1.13
SCN1A-206ENST00000491429 CTSHP09668 335 aa8□□□□□ -1.13
SCN1A-206ENST00000491429 SDHBP21912 280 aa8□□□□□ -1.13
SCN1A-206ENST00000491429 LMNB2Q03252 620 aa8□□□□□ -1.13
SCN1A-206ENST00000491429 NMIQ13287 307 aaPredicted RBP8□□□□□ -1.13
SCN1A-206ENST00000491429 EAPPQ56P03 285 aaPredicted RBP8□□□□□ -1.13
SCN1A-206ENST00000491429 DIEXFQ68CQ4 756 aaKnown RBP8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms