RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 SSRP1Q08945 709 aaKnown RBP13.35□□□□□ -0.27
C9orf3-220ENST00000489318 SHROOM1Q2M3G4 852 aaPredicted RBP13.35□□□□□ -0.27
C9orf3-220ENST00000489318 USP50Q70EL3 339 aaPredicted RBP13.35□□□□□ -0.27
C9orf3-220ENST00000489318 CLEC10AQ8IUN9 316 aa13.35□□□□□ -0.27
C9orf3-220ENST00000489318 TRIM22Q8IYM9 498 aa13.35□□□□□ -0.27
C9orf3-220ENST00000489318 WASF1Q92558 559 aa13.35□□□□□ -0.27
C9orf3-220ENST00000489318 PHKBQ93100 1093 aa13.35□□□□□ -0.27
C9orf3-220ENST00000489318 HOOK2Q96ED9 719 aa13.35□□□□□ -0.27
C9orf3-220ENST00000489318 GBP4Q96PP9 640 aa13.35□□□□□ -0.27
C9orf3-220ENST00000489318 LZTS2Q9BRK4 669 aa13.35□□□□□ -0.27
C9orf3-220ENST00000489318 RBM27Q9P2N5 1060 aaKnown RBP13.35□□□□□ -0.27
C9orf3-220ENST00000489318 ZBTB21Q9ULJ3 1066 aa13.35□□□□□ -0.27
C9orf3-220ENST00000489318 TCHHQ07283 1943 aa13.35□□□□□ -0.27
C9orf3-220ENST00000489318 VPS37CA5D8V6 355 aaPredicted RBP13.34□□□□□ -0.27
C9orf3-220ENST00000489318 MPHOSPH10O00566 681 aaKnown RBP13.34□□□□□ -0.27
C9orf3-220ENST00000489318 BAG4O95429 457 aaKnown RBP13.34□□□□□ -0.27
C9orf3-220ENST00000489318 GH2P01242 217 aa13.34□□□□□ -0.27
C9orf3-220ENST00000489318 CAP2P40123 477 aa13.34□□□□□ -0.27
C9orf3-220ENST00000489318 SEPT2Q15019 361 aa13.34□□□□□ -0.27
C9orf3-220ENST00000489318 NFKBIBQ15653 356 aa13.34□□□□□ -0.27
C9orf3-220ENST00000489318 ASPRV1Q53RT3 343 aa13.34□□□□□ -0.27
C9orf3-220ENST00000489318 SIAH1Q8IUQ4 282 aa13.34□□□□□ -0.27
C9orf3-220ENST00000489318 SRBD1Q8N5C6 995 aaKnown RBP13.34□□□□□ -0.27
C9orf3-220ENST00000489318 GMCL1P1Q8NEA9 526 aa13.34□□□□□ -0.27
C9orf3-220ENST00000489318 FBXO18Q8NFZ0 1043 aa13.34□□□□□ -0.27
C9orf3-220ENST00000489318 SPZ1Q9BXG8 430 aa13.34□□□□□ -0.27
C9orf3-220ENST00000489318 SLC26A6Q9BXS9 759 aa13.34□□□□□ -0.27
C9orf3-220ENST00000489318 CABP5Q9NP86 173 aa13.34□□□□□ -0.27
C9orf3-220ENST00000489318 PARP1P09874 1014 aaKnown RBP13.33□□□□□ -0.28
C9orf3-220ENST00000489318 EEF2P13639 858 aaKnown RBP13.33□□□□□ -0.28
C9orf3-220ENST00000489318 RESTQ13127 1097 aa13.33□□□□□ -0.28
C9orf3-220ENST00000489318 PKN1Q16512 942 aa13.33□□□□□ -0.28
C9orf3-220ENST00000489318 SLC35G1Q2M3R5 365 aa13.33□□□□□ -0.28
C9orf3-220ENST00000489318 DCAF15Q66K64 600 aa13.33□□□□□ -0.28
C9orf3-220ENST00000489318 LRRC47Q8N1G4 583 aaKnown RBP13.33□□□□□ -0.28
C9orf3-220ENST00000489318 STAG2Q8N3U4 1231 aa13.33□□□□□ -0.28
C9orf3-220ENST00000489318 ZC3H15Q8WU90 426 aaKnown RBP13.33□□□□□ -0.28
C9orf3-220ENST00000489318 C8orf76Q96K31 380 aa13.33□□□□□ -0.28
C9orf3-220ENST00000489318 ALG1Q9BT22 464 aa13.33□□□□□ -0.28
C9orf3-220ENST00000489318 CLIP2Q9UDT6 1046 aa13.33□□□□□ -0.28
C9orf3-220ENST00000489318 ZNF112Q9UJU3 913 aa13.33□□□□□ -0.28
C9orf3-220ENST00000489318 ATP6V1DQ9Y5K8 247 aa13.33□□□□□ -0.28
C9orf3-220ENST00000489318 PARP14Q460N5 1801 aa13.33□□□□□ -0.28
C9orf3-220ENST00000489318 IQCA1LA6NCM1 817 aa13.32□□□□□ -0.28
C9orf3-220ENST00000489318 H3BQV1 296 aa13.32□□□□□ -0.28
C9orf3-220ENST00000489318 PPFIA3O75145 1194 aa13.32□□□□□ -0.28
C9orf3-220ENST00000489318 ASNSP08243 561 aa13.32□□□□□ -0.28
C9orf3-220ENST00000489318 EPHX2P34913 555 aa13.32□□□□□ -0.28
C9orf3-220ENST00000489318 ZNF543Q08ER8 600 aa13.32□□□□□ -0.28
C9orf3-220ENST00000489318 NBPF12Q5TAG4 269 aaPredicted RBP13.32□□□□□ -0.28
C9orf3-220ENST00000489318 IFFO2Q5TF58 517 aa13.32□□□□□ -0.28
C9orf3-220ENST00000489318 RASGRP2Q7LDG7 609 aa13.32□□□□□ -0.28
C9orf3-220ENST00000489318 FAM177A1Q8N128 213 aaPredicted RBP13.32□□□□□ -0.28
C9orf3-220ENST00000489318 CMTR1Q8N1G2 835 aaKnown RBP13.32□□□□□ -0.28
C9orf3-220ENST00000489318 DCAF4Q8WV16 495 aa13.32□□□□□ -0.28
C9orf3-220ENST00000489318 ZSCAN16Q9H4T2 348 aaPredicted RBP13.32□□□□□ -0.28
C9orf3-220ENST00000489318 SCAF8Q9UPN6 1271 aaKnown RBP13.32□□□□□ -0.28
C9orf3-220ENST00000489318 DDX11L8A8MPP1 907 aa13.31□□□□□ -0.28
C9orf3-220ENST00000489318 USP17L5A8MUK1 530 aa13.31□□□□□ -0.28
C9orf3-220ENST00000489318 POTECB2RU33 542 aa13.31□□□□□ -0.28
C9orf3-220ENST00000489318 UBE2Q2LH0YL09 131 aa13.31□□□□□ -0.28
C9orf3-220ENST00000489318 CYTH3O43739 400 aa13.31□□□□□ -0.28
C9orf3-220ENST00000489318 CTNND1O60716 968 aaKnown RBP13.31□□□□□ -0.28
C9orf3-220ENST00000489318 MCM4P33991 863 aa13.31□□□□□ -0.28
C9orf3-220ENST00000489318 GPATCH4Q5T3I0 446 aaKnown RBP13.31□□□□□ -0.28
C9orf3-220ENST00000489318 MIGA2Q7L4E1 593 aa13.31□□□□□ -0.28
C9orf3-220ENST00000489318 GMCL1Q96IK5 515 aa13.31□□□□□ -0.28
C9orf3-220ENST00000489318 AIFM3Q96NN9 605 aa13.31□□□□□ -0.28
C9orf3-220ENST00000489318 ZNF341Q9BYN7 854 aa13.31□□□□□ -0.28
C9orf3-220ENST00000489318 RIOX1Q9H6W3 641 aa13.31□□□□□ -0.28
C9orf3-220ENST00000489318 ARHGEF10LQ9HCE6 1279 aa13.31□□□□□ -0.28
C9orf3-220ENST00000489318 TMX2Q9Y320 296 aa13.31□□□□□ -0.28
C9orf3-220ENST00000489318 PTPRFP10586 1907 aa13.31□□□□□ -0.28
C9orf3-220ENST00000489318 A0A1W2PRG0 241 aa13.3□□□□□ -0.28
C9orf3-220ENST00000489318 KLRF2D3W0D1 207 aa13.3□□□□□ -0.28
C9orf3-220ENST00000489318 PFKFB3Q16875 520 aaPredicted RBP13.3□□□□□ -0.28
C9orf3-220ENST00000489318 NOL9Q5SY16 702 aaKnown RBP13.3□□□□□ -0.28
C9orf3-220ENST00000489318 KRT40Q6A162 431 aa13.3□□□□□ -0.28
C9orf3-220ENST00000489318 USP17L2Q6R6M4 530 aa13.3□□□□□ -0.28
C9orf3-220ENST00000489318 TMEM87AQ8NBN3 555 aa13.3□□□□□ -0.28
C9orf3-220ENST00000489318 SHISA4Q96DD7 197 aa13.3□□□□□ -0.28
C9orf3-220ENST00000489318 TAF1DQ9H5J8 278 aaPredicted RBP13.3□□□□□ -0.28
C9orf3-220ENST00000489318 SH2D4AQ9H788 454 aa13.3□□□□□ -0.28
C9orf3-220ENST00000489318 LOC285556D6RIA3 1793 aa13.3□□□□□ -0.28
C9orf3-220ENST00000489318 hCG_1984214I3L0E3 225 aa13.29□□□□□ -0.28
C9orf3-220ENST00000489318 MMP1P03956 469 aa13.29□□□□□ -0.28
C9orf3-220ENST00000489318 SCG2P13521 617 aa13.29□□□□□ -0.28
C9orf3-220ENST00000489318 AKAP17AQ02040 695 aaKnown RBP13.29□□□□□ -0.28
C9orf3-220ENST00000489318 KIF23Q02241 960 aaPredicted RBP13.29□□□□□ -0.28
C9orf3-220ENST00000489318 SUPT20HL1Q3ZLR7 823 aa13.29□□□□□ -0.28
C9orf3-220ENST00000489318 FOXD4L5Q5VV16 416 aaPredicted RBP13.29□□□□□ -0.28
C9orf3-220ENST00000489318 BRAPQ7Z569 592 aa13.29□□□□□ -0.28
C9orf3-220ENST00000489318 CCDC82Q8N4S0 544 aa13.29□□□□□ -0.28
C9orf3-220ENST00000489318 ZNF713Q8N859 430 aaPredicted RBP13.29□□□□□ -0.28
C9orf3-220ENST00000489318 FOXD4L4Q8WXT5 416 aaPredicted RBP13.29□□□□□ -0.28
C9orf3-220ENST00000489318 DCPSQ96C86 337 aaKnown RBP13.29□□□□□ -0.28
C9orf3-220ENST00000489318 MTMR8Q96EF0 704 aa13.29□□□□□ -0.28
C9orf3-220ENST00000489318 SH3GLB2Q9NR46 395 aa13.29□□□□□ -0.28
C9orf3-220ENST00000489318 GJB4Q9NTQ9 266 aa13.29□□□□□ -0.28
C9orf3-220ENST00000489318 V9GY48 417 aaPredicted RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms