RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 PPP2R5BQ15173 497 aa14.06□□□□□ -0.16
HDAC6-230ENST00000488543 TBC1D10BQ4KMP7 808 aaPredicted RBP14.06□□□□□ -0.16
HDAC6-230ENST00000488543 CDAN1Q8IWY9 1227 aa14.06□□□□□ -0.16
HDAC6-230ENST00000488543 ZNF444Q8N0Y2 327 aaPredicted RBP14.06□□□□□ -0.16
HDAC6-230ENST00000488543 FAM13BQ9NYF5 915 aa14.06□□□□□ -0.16
HDAC6-230ENST00000488543 RNF181Q9P0P0 153 aa14.06□□□□□ -0.16
HDAC6-230ENST00000488543 RCOR1Q9UKL0 485 aa14.06□□□□□ -0.16
HDAC6-230ENST00000488543 ASTN2O75129 1339 aaPredicted RBP14.06□□□□□ -0.16
HDAC6-230ENST00000488543 UQCRHLA0A096LP55 91 aa14.06□□□□□ -0.16
HDAC6-230ENST00000488543 UQCRHP07919 91 aa14.06□□□□□ -0.16
HDAC6-230ENST00000488543 ATL3Q6DD88 541 aa14.06□□□□□ -0.16
HDAC6-230ENST00000488543 SERPINB13Q9UIV8 391 aa14.06□□□□□ -0.16
HDAC6-230ENST00000488543 CFAP45Q9UL16 551 aa14.06□□□□□ -0.16
HDAC6-230ENST00000488543 MYH8P13535 1937 aa14.06□□□□□ -0.16
HDAC6-230ENST00000488543 SIPA1L1O43166 1804 aa14.05□□□□□ -0.16
HDAC6-230ENST00000488543 RRP9O43818 475 aaKnown RBP14.05□□□□□ -0.16
HDAC6-230ENST00000488543 ADCY5O95622 1261 aa14.05□□□□□ -0.16
HDAC6-230ENST00000488543 TSPY3P0CV98 308 aa14.05□□□□□ -0.16
HDAC6-230ENST00000488543 TSPY8P0CW00 308 aa14.05□□□□□ -0.16
HDAC6-230ENST00000488543 CALM1P0DP23 149 aa14.05□□□□□ -0.16
HDAC6-230ENST00000488543 CALM2P0DP24 149 aa14.05□□□□□ -0.16
HDAC6-230ENST00000488543 CALM3P0DP25 149 aa14.05□□□□□ -0.16
HDAC6-230ENST00000488543 ZNF396Q96N95 335 aaPredicted RBP14.05□□□□□ -0.16
HDAC6-230ENST00000488543 DNAJC18Q9H819 358 aa14.05□□□□□ -0.16
HDAC6-230ENST00000488543 TCP11L1Q9NUJ3 509 aa14.05□□□□□ -0.16
HDAC6-230ENST00000488543 DDNO94850 711 aaPredicted RBP14.05□□□□□ -0.16
HDAC6-230ENST00000488543 PLEKHA8P1O95397 391 aa14.05□□□□□ -0.16
HDAC6-230ENST00000488543 GPR162Q16538 588 aa14.05□□□□□ -0.16
HDAC6-230ENST00000488543 SHROOM1Q2M3G4 852 aaPredicted RBP14.05□□□□□ -0.16
HDAC6-230ENST00000488543 BRAPQ7Z569 592 aa14.05□□□□□ -0.16
HDAC6-230ENST00000488543 TSC1Q92574 1164 aa14.05□□□□□ -0.16
HDAC6-230ENST00000488543 ZBED3Q96IU2 234 aaPredicted RBP14.05□□□□□ -0.16
HDAC6-230ENST00000488543 ZNF280AP59817 542 aaPredicted RBP14.04□□□□□ -0.16
HDAC6-230ENST00000488543 CAMK4Q16566 473 aa14.04□□□□□ -0.16
HDAC6-230ENST00000488543 SPDYE2Q495Y8 402 aa14.04□□□□□ -0.16
HDAC6-230ENST00000488543 C9orf131Q5VYM1 1079 aa14.04□□□□□ -0.16
HDAC6-230ENST00000488543 TMTC3Q6ZXV5 915 aa14.04□□□□□ -0.16
HDAC6-230ENST00000488543 DGKHQ86XP1 1220 aa14.04□□□□□ -0.16
HDAC6-230ENST00000488543 TRIM22Q8IYM9 498 aa14.04□□□□□ -0.16
HDAC6-230ENST00000488543 CCDC82Q8N4S0 544 aa14.04□□□□□ -0.16
HDAC6-230ENST00000488543 WASF1Q92558 559 aa14.04□□□□□ -0.16
HDAC6-230ENST00000488543 RNF26Q9BY78 433 aaPredicted RBP14.04□□□□□ -0.16
HDAC6-230ENST00000488543 TMEM39BQ9GZU3 492 aa14.04□□□□□ -0.16
HDAC6-230ENST00000488543 RBM28Q9NW13 759 aaKnown RBP14.04□□□□□ -0.16
HDAC6-230ENST00000488543 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.04□□□□□ -0.16
HDAC6-230ENST00000488543 DEXIO95424 95 aa14.04□□□□□ -0.16
HDAC6-230ENST00000488543 LIG1P18858 919 aa14.04□□□□□ -0.16
HDAC6-230ENST00000488543 CDK11BP21127 795 aaKnown RBP14.04□□□□□ -0.16
HDAC6-230ENST00000488543 RPS12P25398 132 aaKnown RBP14.04□□□□□ -0.16
HDAC6-230ENST00000488543 SHMT1P34896 483 aa14.04□□□□□ -0.16
HDAC6-230ENST00000488543 CEBPZQ03701 1054 aaKnown RBP14.04□□□□□ -0.16
HDAC6-230ENST00000488543 MYSM1Q5VVJ2 828 aa14.04□□□□□ -0.16
HDAC6-230ENST00000488543 CLEC10AQ8IUN9 316 aa14.04□□□□□ -0.16
HDAC6-230ENST00000488543 MTMR14Q8NCE2 650 aa14.04□□□□□ -0.16
HDAC6-230ENST00000488543 DPF2Q92785 391 aa14.04□□□□□ -0.16
HDAC6-230ENST00000488543 SHISA4Q96DD7 197 aa14.04□□□□□ -0.16
HDAC6-230ENST00000488543 SBF1O95248 1867 aa14.03□□□□□ -0.16
HDAC6-230ENST00000488543 HLA-DOAP06340 250 aa14.03□□□□□ -0.16
HDAC6-230ENST00000488543 AKR1B1P15121 316 aa14.03□□□□□ -0.16
HDAC6-230ENST00000488543 EPS15P42566 896 aa14.03□□□□□ -0.16
HDAC6-230ENST00000488543 PKN1Q16512 942 aa14.03□□□□□ -0.16
HDAC6-230ENST00000488543 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.03□□□□□ -0.16
HDAC6-230ENST00000488543 RTEL1Q9NZ71 1219 aa14.03□□□□□ -0.16
HDAC6-230ENST00000488543 PI4KBQ9UBF8 816 aa14.03□□□□□ -0.16
HDAC6-230ENST00000488543 CNTNAP1P78357 1384 aa14.03□□□□□ -0.16
HDAC6-230ENST00000488543 CNTNAP5Q8WYK1 1306 aa14.03□□□□□ -0.16
HDAC6-230ENST00000488543 DHX36Q9H2U1 1008 aaKnown RBP14.03□□□□□ -0.16
HDAC6-230ENST00000488543 TMOD2Q9NZR1 351 aa14.03□□□□□ -0.16
HDAC6-230ENST00000488543 STX8Q9UNK0 236 aa14.03□□□□□ -0.16
HDAC6-230ENST00000488543 MTMR7Q9Y216 660 aa14.03□□□□□ -0.16
HDAC6-230ENST00000488543 GREB1LQ9C091 1923 aaPredicted RBP14.02□□□□□ -0.16
HDAC6-230ENST00000488543 PRPF3O43395 683 aaKnown RBP14.02□□□□□ -0.16
HDAC6-230ENST00000488543 ENTPD3O75355 529 aa14.02□□□□□ -0.16
HDAC6-230ENST00000488543 U2AF2P26368 475 aaKnown RBP eCLIP14.02□□□□□ -0.16
HDAC6-230ENST00000488543 CCDC178Q5BJE1 867 aa14.02□□□□□ -0.16
HDAC6-230ENST00000488543 SRBD1Q8N5C6 995 aaKnown RBP14.02□□□□□ -0.16
HDAC6-230ENST00000488543 SPC24Q8NBT2 197 aa14.02□□□□□ -0.16
HDAC6-230ENST00000488543 NEDD1Q8NHV4 660 aa14.02□□□□□ -0.16
HDAC6-230ENST00000488543 CSRNP1Q96S65 589 aa14.02□□□□□ -0.16
HDAC6-230ENST00000488543 CLIC4Q9Y696 253 aa14.02□□□□□ -0.16
HDAC6-230ENST00000488543 TRIM29Q14134 588 aa14.02□□□□□ -0.17
HDAC6-230ENST00000488543 GPC2Q8N158 579 aa14.02□□□□□ -0.17
HDAC6-230ENST00000488543 KAT14Q9H8E8 782 aa14.02□□□□□ -0.17
HDAC6-230ENST00000488543 ZNF287Q9HBT7 754 aa14.02□□□□□ -0.17
HDAC6-230ENST00000488543 KCNJ14Q9UNX9 436 aa14.02□□□□□ -0.17
HDAC6-230ENST00000488543 MYO1BO43795 1136 aa14.01□□□□□ -0.17
HDAC6-230ENST00000488543 MMP1P03956 469 aa14.01□□□□□ -0.17
HDAC6-230ENST00000488543 NOVP48745 357 aa14.01□□□□□ -0.17
HDAC6-230ENST00000488543 RASGRP2Q7LDG7 609 aa14.01□□□□□ -0.17
HDAC6-230ENST00000488543 PNMA1Q8ND90 353 aa14.01□□□□□ -0.17
HDAC6-230ENST00000488543 CTCFLQ8NI51 663 aaPredicted RBP14.01□□□□□ -0.17
HDAC6-230ENST00000488543 TRPM4Q8TD43 1214 aa14.01□□□□□ -0.17
HDAC6-230ENST00000488543 CEP95Q96GE4 821 aa14.01□□□□□ -0.17
HDAC6-230ENST00000488543 MAP3K14Q99558 947 aa14.01□□□□□ -0.17
HDAC6-230ENST00000488543 POLR3EQ9NVU0 708 aa14.01□□□□□ -0.17
HDAC6-230ENST00000488543 PLIN4Q96Q06 1357 aa14.01□□□□□ -0.17
HDAC6-230ENST00000488543 RRP1BQ14684 758 aaKnown RBP14.01□□□□□ -0.17
HDAC6-230ENST00000488543 GRM4Q14833 912 aa14.01□□□□□ -0.17
HDAC6-230ENST00000488543 DNTTIP2Q5QJE6 756 aaKnown RBP14.01□□□□□ -0.17
HDAC6-230ENST00000488543 MIGA2Q7L4E1 593 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms