RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 VCPKMTQ9H867 229 aa16.58■□□□□ 0.24
SYNE1-226ENST00000488376 KANSL2Q9H9L4 492 aa16.58■□□□□ 0.24
SYNE1-226ENST00000488376 ARHGEF10LQ9HCE6 1279 aa16.58■□□□□ 0.24
SYNE1-226ENST00000488376 BTBD7Q9P203 1132 aa16.58■□□□□ 0.24
SYNE1-226ENST00000488376 CCDC171Q6TFL3 1326 aa16.58■□□□□ 0.24
SYNE1-226ENST00000488376 MYH8P13535 1937 aa16.57■□□□□ 0.24
SYNE1-226ENST00000488376 FGAP02671 866 aa16.57■□□□□ 0.24
SYNE1-226ENST00000488376 ELNP15502 786 aa16.57■□□□□ 0.24
SYNE1-226ENST00000488376 FLT3LGP49771 235 aa16.57■□□□□ 0.24
SYNE1-226ENST00000488376 RGS19P49795 217 aa16.57■□□□□ 0.24
SYNE1-226ENST00000488376 CWC27Q6UX04 472 aaKnown RBP16.57■□□□□ 0.24
SYNE1-226ENST00000488376 NKX2-3Q8TAU0 364 aa16.57■□□□□ 0.24
SYNE1-226ENST00000488376 TANGO6Q9C0B7 1094 aa16.57■□□□□ 0.24
SYNE1-226ENST00000488376 NBPF3Q9H094 633 aa16.57■□□□□ 0.24
SYNE1-226ENST00000488376 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.57■□□□□ 0.24
SYNE1-226ENST00000488376 ERVK-9P63128 1117 aa16.56■□□□□ 0.24
SYNE1-226ENST00000488376 ERVK-24P63145 666 aa16.56■□□□□ 0.24
SYNE1-226ENST00000488376 ALX1Q15699 326 aa16.56■□□□□ 0.24
SYNE1-226ENST00000488376 GPRC5AQ8NFJ5 357 aa16.56■□□□□ 0.24
SYNE1-226ENST00000488376 RAET1EQ8TD07 263 aa16.56■□□□□ 0.24
SYNE1-226ENST00000488376 CEP95Q96GE4 821 aa16.56■□□□□ 0.24
SYNE1-226ENST00000488376 NUP88Q99567 741 aaPredicted RBP16.56■□□□□ 0.24
SYNE1-226ENST00000488376 MGAMO43451 1857 aa16.56■□□□□ 0.24
SYNE1-226ENST00000488376 RAD21O60216 631 aa16.55■□□□□ 0.24
SYNE1-226ENST00000488376 NMT2O60551 498 aa16.55■□□□□ 0.24
SYNE1-226ENST00000488376 HOXD10P28358 340 aa16.55■□□□□ 0.24
SYNE1-226ENST00000488376 PRMT2P55345 433 aa16.55■□□□□ 0.24
SYNE1-226ENST00000488376 HAND2P61296 217 aa16.55■□□□□ 0.24
SYNE1-226ENST00000488376 MTFR1Q15390 333 aa16.55■□□□□ 0.24
SYNE1-226ENST00000488376 SAMD1Q6SPF0 538 aaPredicted RBP16.55■□□□□ 0.24
SYNE1-226ENST00000488376 TICAM2Q86XR7 235 aa16.55■□□□□ 0.24
SYNE1-226ENST00000488376 ZNF444Q8N0Y2 327 aaPredicted RBP16.55■□□□□ 0.24
SYNE1-226ENST00000488376 DIAPH3Q9NSV4 1193 aa16.55■□□□□ 0.24
SYNE1-226ENST00000488376 FBXO28Q9NVF7 368 aa16.55■□□□□ 0.24
SYNE1-226ENST00000488376 ANAPC4Q9UJX5 808 aa16.55■□□□□ 0.24
SYNE1-226ENST00000488376 GJD2Q9UKL4 321 aa16.55■□□□□ 0.24
SYNE1-226ENST00000488376 PLIN4Q96Q06 1357 aa16.54■□□□□ 0.24
SYNE1-226ENST00000488376 GRK4P32298 578 aa16.54■□□□□ 0.24
SYNE1-226ENST00000488376 TFAP4Q01664 338 aa16.54■□□□□ 0.24
SYNE1-226ENST00000488376 PDE4BQ07343 736 aa16.54■□□□□ 0.24
SYNE1-226ENST00000488376 FAM83BQ5T0W9 1011 aa16.54■□□□□ 0.24
SYNE1-226ENST00000488376 LBX2Q6XYB7 198 aa16.54■□□□□ 0.24
SYNE1-226ENST00000488376 TBC1D10CQ8IV04 446 aa16.54■□□□□ 0.24
SYNE1-226ENST00000488376 LRRC47Q8N1G4 583 aaKnown RBP16.54■□□□□ 0.24
SYNE1-226ENST00000488376 LPAR1Q92633 364 aa16.54■□□□□ 0.24
SYNE1-226ENST00000488376 COA7Q96BR5 231 aa16.54■□□□□ 0.24
SYNE1-226ENST00000488376 ATG4CQ96DT6 458 aa16.54■□□□□ 0.24
SYNE1-226ENST00000488376 MTMR4Q9NYA4 1195 aa16.54■□□□□ 0.24
SYNE1-226ENST00000488376 NYAP2Q9P242 653 aa16.54■□□□□ 0.24
SYNE1-226ENST00000488376 CLIP2Q9UDT6 1046 aa16.54■□□□□ 0.24
SYNE1-226ENST00000488376 RABGAP1Q9Y3P9 1069 aa16.54■□□□□ 0.24
SYNE1-226ENST00000488376 ADCY3O60266 1144 aa16.53■□□□□ 0.24
SYNE1-226ENST00000488376 FLOT1O75955 427 aa16.53■□□□□ 0.24
SYNE1-226ENST00000488376 TSPY3P0CV98 308 aa16.53■□□□□ 0.24
SYNE1-226ENST00000488376 TSPY8P0CW00 308 aa16.53■□□□□ 0.24
SYNE1-226ENST00000488376 COG2Q14746 738 aa16.53■□□□□ 0.24
SYNE1-226ENST00000488376 RASGRP2Q7LDG7 609 aa16.53■□□□□ 0.24
SYNE1-226ENST00000488376 NEDD1Q8NHV4 660 aa16.53■□□□□ 0.24
SYNE1-226ENST00000488376 CHMP4CQ96CF2 233 aa16.53■□□□□ 0.24
SYNE1-226ENST00000488376 SH2D4AQ9H788 454 aa16.53■□□□□ 0.24
SYNE1-226ENST00000488376 IL17RBQ9NRM6 502 aa16.53■□□□□ 0.24
SYNE1-226ENST00000488376 BRCA2P51587 3418 aa16.53■□□□□ 0.24
SYNE1-226ENST00000488376 RLFQ13129 1914 aa16.53■□□□□ 0.24
SYNE1-226ENST00000488376 PLXNB2O15031 1838 aa16.52■□□□□ 0.24
SYNE1-226ENST00000488376 WDR46O15213 610 aaKnown RBP16.52■□□□□ 0.24
SYNE1-226ENST00000488376 NDUFB10O96000 172 aa16.52■□□□□ 0.24
SYNE1-226ENST00000488376 SLC3A2P08195 630 aaKnown RBP16.52■□□□□ 0.24
SYNE1-226ENST00000488376 EN2P19622 333 aaPredicted RBP16.52■□□□□ 0.24
SYNE1-226ENST00000488376 DSG3P32926 999 aa16.52■□□□□ 0.24
SYNE1-226ENST00000488376 TRIM32Q13049 653 aa16.52■□□□□ 0.24
SYNE1-226ENST00000488376 GPR142Q7Z601 462 aa16.52■□□□□ 0.24
SYNE1-226ENST00000488376 NBPF11Q86T75 865 aa16.52■□□□□ 0.24
SYNE1-226ENST00000488376 ZNF287Q9HBT7 754 aa16.52■□□□□ 0.24
SYNE1-226ENST00000488376 GOPCQ9HD26 462 aa16.52■□□□□ 0.24
SYNE1-226ENST00000488376 A0A0G2JMZ2 1700 aa16.52■□□□□ 0.24
SYNE1-226ENST00000488376 ZMYM6O95789 1325 aa16.51■□□□□ 0.23
SYNE1-226ENST00000488376 F5H6K3 240 aa16.51■□□□□ 0.23
SYNE1-226ENST00000488376 FGRP09769 529 aa16.51■□□□□ 0.23
SYNE1-226ENST00000488376 MLLT1Q03111 559 aaPredicted RBP16.51■□□□□ 0.23
SYNE1-226ENST00000488376 KLRC3Q07444 240 aa16.51■□□□□ 0.23
SYNE1-226ENST00000488376 IRF5Q13568 498 aa16.51■□□□□ 0.23
SYNE1-226ENST00000488376 GTF3C2Q8WUA4 911 aaPredicted RBP16.51■□□□□ 0.23
SYNE1-226ENST00000488376 NEDD4P46934 1319 aa16.5■□□□□ 0.23
SYNE1-226ENST00000488376 ORC4O43929 436 aa16.5■□□□□ 0.23
SYNE1-226ENST00000488376 RANBP6O60518 1105 aaKnown RBP16.5■□□□□ 0.23
SYNE1-226ENST00000488376 TTLL1O95922 423 aa16.5■□□□□ 0.23
SYNE1-226ENST00000488376 INHAP05111 366 aa16.5■□□□□ 0.23
SYNE1-226ENST00000488376 CYP2B6P20813 491 aa16.5■□□□□ 0.23
SYNE1-226ENST00000488376 CHMLP26374 656 aa16.5■□□□□ 0.23
SYNE1-226ENST00000488376 MAPK4P31152 587 aa16.5■□□□□ 0.23
SYNE1-226ENST00000488376 RRP12Q5JTH9 1297 aaKnown RBP16.5■□□□□ 0.23
SYNE1-226ENST00000488376 MORN1Q5T089 497 aa16.5■□□□□ 0.23
SYNE1-226ENST00000488376 SLAIN1Q8ND83 568 aa16.5■□□□□ 0.23
SYNE1-226ENST00000488376 USP6NLQ92738 828 aa16.5■□□□□ 0.23
SYNE1-226ENST00000488376 MKL1Q969V6 931 aa16.5■□□□□ 0.23
SYNE1-226ENST00000488376 MOV10L1Q9BXT6 1211 aaKnown RBP16.5■□□□□ 0.23
SYNE1-226ENST00000488376 UNC93B1Q9H1C4 597 aa16.5■□□□□ 0.23
SYNE1-226ENST00000488376 HOXC10Q9NYD6 342 aa16.5■□□□□ 0.23
SYNE1-226ENST00000488376 BIN2Q9UBW5 565 aaPredicted RBP16.5■□□□□ 0.23
SYNE1-226ENST00000488376 TSPY2A6NKD2 308 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms