RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 TMEM132EQ6IEE7 984 aa6.83□□□□□ -1.32
SMC4-220ENST00000488017 DTWD2Q8NBA8 298 aa6.83□□□□□ -1.32
SMC4-220ENST00000488017 XYLT2Q9H1B5 865 aa6.83□□□□□ -1.32
SMC4-220ENST00000488017 GCM1Q9NP62 436 aa6.83□□□□□ -1.32
SMC4-220ENST00000488017 KCTD3Q9Y597 815 aa6.83□□□□□ -1.32
SMC4-220ENST00000488017 LTKP29376 864 aa6.82□□□□□ -1.32
SMC4-220ENST00000488017 DUSP4Q13115 394 aa6.82□□□□□ -1.32
SMC4-220ENST00000488017 SEPT6Q14141 434 aa6.82□□□□□ -1.32
SMC4-220ENST00000488017 ZXDCQ2QGD7 858 aaPredicted RBP6.82□□□□□ -1.32
SMC4-220ENST00000488017 RETREG2Q8NC44 543 aa6.82□□□□□ -1.32
SMC4-220ENST00000488017 WWC3Q9ULE0 1092 aa6.82□□□□□ -1.32
SMC4-220ENST00000488017 PDE6BP35913 854 aa6.81□□□□□ -1.32
SMC4-220ENST00000488017 ERICH6BQ5W0A0 696 aa6.81□□□□□ -1.32
SMC4-220ENST00000488017 AGMOQ6ZNB7 445 aa6.81□□□□□ -1.32
SMC4-220ENST00000488017 ANKS4BQ8N8V4 417 aa6.81□□□□□ -1.32
SMC4-220ENST00000488017 PPP1R13LQ8WUF5 828 aa6.81□□□□□ -1.32
SMC4-220ENST00000488017 PCDHB5Q9Y5E4 795 aa6.81□□□□□ -1.32
SMC4-220ENST00000488017 PCDHA11Q9Y5I1 949 aa6.81□□□□□ -1.32
SMC4-220ENST00000488017 CYB5D2Q8WUJ1 264 aa6.8□□□□□ -1.32
SMC4-220ENST00000488017 ACSF2Q96CM8 615 aaPredicted RBP6.8□□□□□ -1.32
SMC4-220ENST00000488017 ASB16Q96NS5 453 aa6.8□□□□□ -1.32
SMC4-220ENST00000488017 GPR160Q9UJ42 338 aa6.8□□□□□ -1.32
SMC4-220ENST00000488017 HRKO00198 91 aa6.79□□□□□ -1.32
SMC4-220ENST00000488017 CCDC85BQ15834 202 aaPredicted RBP6.79□□□□□ -1.32
SMC4-220ENST00000488017 TSNAXIP1Q2TAA8 658 aa6.79□□□□□ -1.32
SMC4-220ENST00000488017 RNF141Q8WVD5 230 aa6.79□□□□□ -1.32
SMC4-220ENST00000488017 SHISA4Q96DD7 197 aa6.79□□□□□ -1.32
SMC4-220ENST00000488017 MIR1-1HGQ9H1L0 117 aa6.79□□□□□ -1.32
SMC4-220ENST00000488017 GTF3C3Q9Y5Q9 886 aa6.79□□□□□ -1.32
SMC4-220ENST00000488017 SASH1O94885 1247 aa6.78□□□□□ -1.32
SMC4-220ENST00000488017 RPL6Q02878 288 aaKnown RBP6.78□□□□□ -1.32
SMC4-220ENST00000488017 SGPP1Q9BX95 441 aa6.78□□□□□ -1.32
SMC4-220ENST00000488017 RBM47A0AV96 593 aaKnown RBP6.77□□□□□ -1.33
SMC4-220ENST00000488017 OR14I1A6ND48 311 aa6.77□□□□□ -1.33
SMC4-220ENST00000488017 SUV39H1O43463 412 aa6.77□□□□□ -1.33
SMC4-220ENST00000488017 EIF4BP23588 611 aaKnown RBP6.77□□□□□ -1.33
SMC4-220ENST00000488017 LIG3P49916 1009 aa6.77□□□□□ -1.33
SMC4-220ENST00000488017 TEKQ02763 1124 aa6.77□□□□□ -1.33
SMC4-220ENST00000488017 SSPNQ14714 243 aa6.77□□□□□ -1.33
SMC4-220ENST00000488017 LINC01599Q8WXQ3 324 aa6.77□□□□□ -1.33
SMC4-220ENST00000488017 SIGLEC10Q96LC7 697 aa6.77□□□□□ -1.33
SMC4-220ENST00000488017 OTOL1A6NHN0 477 aaPredicted RBP6.76□□□□□ -1.33
SMC4-220ENST00000488017 YARSP54577 528 aaKnown RBP6.76□□□□□ -1.33
SMC4-220ENST00000488017 DIEXFQ68CQ4 756 aaKnown RBP6.76□□□□□ -1.33
SMC4-220ENST00000488017 ZNF281Q9Y2X9 895 aa6.76□□□□□ -1.33
SMC4-220ENST00000488017 BRD1O95696 1058 aa6.75□□□□□ -1.33
SMC4-220ENST00000488017 EFEMP1Q12805 493 aa6.75□□□□□ -1.33
SMC4-220ENST00000488017 SPATS1Q496A3 300 aa6.75□□□□□ -1.33
SMC4-220ENST00000488017 TMEM201Q5SNT2 666 aa6.75□□□□□ -1.33
SMC4-220ENST00000488017 NLRX1Q86UT6 975 aa6.75□□□□□ -1.33
SMC4-220ENST00000488017 FAM13CQ8NE31 585 aa6.75□□□□□ -1.33
SMC4-220ENST00000488017 ASPNQ9BXN1 380 aa6.75□□□□□ -1.33
SMC4-220ENST00000488017 EBF1Q9UH73 591 aa6.75□□□□□ -1.33
SMC4-220ENST00000488017 MBD1Q9UIS9 605 aaPredicted RBP6.75□□□□□ -1.33
SMC4-220ENST00000488017 IRAK3Q9Y616 596 aa6.75□□□□□ -1.33
SMC4-220ENST00000488017 RLBP1P12271 317 aa6.74□□□□□ -1.33
SMC4-220ENST00000488017 PI3P19957 117 aa6.74□□□□□ -1.33
SMC4-220ENST00000488017 GNA15P30679 374 aa6.74□□□□□ -1.33
SMC4-220ENST00000488017 DACT3Q96B18 629 aaPredicted RBP6.74□□□□□ -1.33
SMC4-220ENST00000488017 G6PC3Q9BUM1 346 aa6.74□□□□□ -1.33
SMC4-220ENST00000488017 CRTAC1Q9NQ79 661 aa6.74□□□□□ -1.33
SMC4-220ENST00000488017 LRRN2O75325 713 aa6.73□□□□□ -1.33
SMC4-220ENST00000488017 LDHBP07195 334 aaKnown RBP6.73□□□□□ -1.33
SMC4-220ENST00000488017 TFE3P19532 575 aaPredicted RBP6.73□□□□□ -1.33
SMC4-220ENST00000488017 SRSF3P84103 164 aaKnown RBP6.73□□□□□ -1.33
SMC4-220ENST00000488017 CCDC84Q86UT8 332 aaPredicted RBP6.73□□□□□ -1.33
SMC4-220ENST00000488017 SLFN12Q8IYM2 578 aa6.73□□□□□ -1.33
SMC4-220ENST00000488017 SIRT5Q9NXA8 310 aa6.73□□□□□ -1.33
SMC4-220ENST00000488017 ADAMTS20P59510 1910 aa6.72□□□□□ -1.33
SMC4-220ENST00000488017 NOTOA8MTQ0 251 aa6.72□□□□□ -1.33
SMC4-220ENST00000488017 UPK3BL1B0FP48 263 aa6.72□□□□□ -1.33
SMC4-220ENST00000488017 UPK3BL2E5RIL1 263 aa6.72□□□□□ -1.33
SMC4-220ENST00000488017 P4HBP07237 508 aaKnown RBP6.72□□□□□ -1.33
SMC4-220ENST00000488017 PLCG1P19174 1290 aa6.72□□□□□ -1.33
SMC4-220ENST00000488017 AFF3P51826 1226 aaKnown RBP6.72□□□□□ -1.33
SMC4-220ENST00000488017 ADGRF1Q5T601 910 aa6.72□□□□□ -1.33
SMC4-220ENST00000488017 RNF111Q6ZNA4 994 aa6.72□□□□□ -1.33
SMC4-220ENST00000488017 ENOX1Q8TC92 643 aaKnown RBP6.72□□□□□ -1.33
SMC4-220ENST00000488017 KREMEN1Q96MU8 473 aa6.72□□□□□ -1.33
SMC4-220ENST00000488017 AK5Q9Y6K8 562 aa6.72□□□□□ -1.33
SMC4-220ENST00000488017 N4BP3O15049 544 aa6.71□□□□□ -1.34
SMC4-220ENST00000488017 NRDCO43847 1150 aa6.71□□□□□ -1.34
SMC4-220ENST00000488017 KIR2DL1P43626 348 aaPredicted RBP6.71□□□□□ -1.34
SMC4-220ENST00000488017 KIR2DL2P43627 348 aaPredicted RBP6.71□□□□□ -1.34
SMC4-220ENST00000488017 MAP3K11Q16584 847 aa6.71□□□□□ -1.34
SMC4-220ENST00000488017 CLEC16AQ2KHT3 1053 aa6.71□□□□□ -1.34
SMC4-220ENST00000488017 PANK1Q8TE04 598 aa6.71□□□□□ -1.34
SMC4-220ENST00000488017 MYRFQ9Y2G1 1151 aa6.71□□□□□ -1.34
SMC4-220ENST00000488017 CORINQ9Y5Q5 1042 aa6.71□□□□□ -1.34
SMC4-220ENST00000488017 SHISA3A0PJX4 238 aa6.7□□□□□ -1.34
SMC4-220ENST00000488017 SLC22A31A6NKX4 558 aa6.7□□□□□ -1.34
SMC4-220ENST00000488017 INSRRP14616 1297 aa6.7□□□□□ -1.34
SMC4-220ENST00000488017 TNNI2P48788 182 aa6.7□□□□□ -1.34
SMC4-220ENST00000488017 GALK1P51570 392 aa6.7□□□□□ -1.34
SMC4-220ENST00000488017 OLFML2BQ68BL8 750 aa6.7□□□□□ -1.34
SMC4-220ENST00000488017 SP8Q8IXZ3 490 aa6.7□□□□□ -1.34
SMC4-220ENST00000488017 JARID2Q92833 1246 aaPredicted RBP6.7□□□□□ -1.34
SMC4-220ENST00000488017 ABLIM1O14639 778 aa6.69□□□□□ -1.34
SMC4-220ENST00000488017 IRS4O14654 1257 aaPredicted RBP6.69□□□□□ -1.34
SMC4-220ENST00000488017 YBX1P67809 324 aaKnown RBP6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms