RNA–Protein interactions for RNA: ENST00000486100.1

PRPF40A-209, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 4

Gene PRPF40A, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-209ENST00000486100 SPDYE16A6NNV3 312 aaPredicted RBP22.01■■□□□ 1.11
PRPF40A-209ENST00000486100 EEF2P13639 858 aaKnown RBP22.01■■□□□ 1.11
PRPF40A-209ENST00000486100 TDO2P48775 406 aa22.01■■□□□ 1.11
PRPF40A-209ENST00000486100 GPR142Q7Z601 462 aa22.01■■□□□ 1.11
PRPF40A-209ENST00000486100 PLEKHH3Q7Z736 793 aa22.01■■□□□ 1.11
PRPF40A-209ENST00000486100 SOCS4Q8WXH5 440 aa22.01■■□□□ 1.11
PRPF40A-209ENST00000486100 SHISA4Q96DD7 197 aa22.01■■□□□ 1.11
PRPF40A-209ENST00000486100 NACAP1Q9BZK3 213 aa22.01■■□□□ 1.11
PRPF40A-209ENST00000486100 VCPKMTQ9H867 229 aa22.01■■□□□ 1.11
PRPF40A-209ENST00000486100 MYH7P12883 1935 aa22■■□□□ 1.11
PRPF40A-209ENST00000486100 IGHDP01880 384 aa22■■□□□ 1.11
PRPF40A-209ENST00000486100 XRCC5P13010 732 aaKnown RBP22■■□□□ 1.11
PRPF40A-209ENST00000486100 CYP2B6P20813 491 aa22■■□□□ 1.11
PRPF40A-209ENST00000486100 RASA1P20936 1047 aa22■■□□□ 1.11
PRPF40A-209ENST00000486100 U2AF1L4Q8WU68 220 aaKnown RBP22■■□□□ 1.11
PRPF40A-209ENST00000486100 GNL3Q9BVP2 549 aaKnown RBP eCLIP22■■□□□ 1.11
PRPF40A-209ENST00000486100 TANGO6Q9C0B7 1094 aa22■■□□□ 1.11
PRPF40A-209ENST00000486100 BTBD7Q9P203 1132 aa22■■□□□ 1.11
PRPF40A-209ENST00000486100 SUPT16HQ9Y5B9 1047 aaKnown RBP22■■□□□ 1.11
PRPF40A-209ENST00000486100 BRCA2P51587 3418 aa21.99■■□□□ 1.11
PRPF40A-209ENST00000486100 SGPL1O95470 568 aa21.99■■□□□ 1.11
PRPF40A-209ENST00000486100 HMGCRP04035 888 aa21.99■■□□□ 1.11
PRPF40A-209ENST00000486100 CAPN2P17655 700 aa21.99■■□□□ 1.11
PRPF40A-209ENST00000486100 MORN1Q5T089 497 aa21.99■■□□□ 1.11
PRPF40A-209ENST00000486100 STK11IPQ8N1F8 1099 aa21.99■■□□□ 1.11
PRPF40A-209ENST00000486100 USP6NLQ92738 828 aa21.99■■□□□ 1.11
PRPF40A-209ENST00000486100 LNPKQ9C0E8 428 aa21.99■■□□□ 1.11
PRPF40A-209ENST00000486100 ZNF287Q9HBT7 754 aa21.99■■□□□ 1.11
PRPF40A-209ENST00000486100 ROBO3Q96MS0 1386 aa21.99■■□□□ 1.11
PRPF40A-209ENST00000486100 BAZ2AQ9UIF9 1905 aaKnown RBP21.98■■□□□ 1.11
PRPF40A-209ENST00000486100 DSG3P32926 999 aa21.98■■□□□ 1.11
PRPF40A-209ENST00000486100 ATP2B2Q01814 1243 aa21.98■■□□□ 1.11
PRPF40A-209ENST00000486100 B4GALNT3Q6L9W6 998 aa21.98■■□□□ 1.11
PRPF40A-209ENST00000486100 SPICE1Q8N0Z3 855 aa21.98■■□□□ 1.11
PRPF40A-209ENST00000486100 CWC22Q9HCG8 908 aaKnown RBP21.98■■□□□ 1.11
PRPF40A-209ENST00000486100 PAK6Q9NQU5 681 aaPredicted RBP21.98■■□□□ 1.11
PRPF40A-209ENST00000486100 WDR46O15213 610 aaKnown RBP21.97■■□□□ 1.11
PRPF40A-209ENST00000486100 RGS2P41220 211 aa21.97■■□□□ 1.11
PRPF40A-209ENST00000486100 TICAM2Q86XR7 235 aa21.97■■□□□ 1.11
PRPF40A-209ENST00000486100 TRMT44Q8IYL2 757 aaKnown RBP21.97■■□□□ 1.11
PRPF40A-209ENST00000486100 ZNF444Q8N0Y2 327 aaPredicted RBP21.97■■□□□ 1.11
PRPF40A-209ENST00000486100 NAPBQ9H115 298 aa21.97■■□□□ 1.11
PRPF40A-209ENST00000486100 CHD1LQ86WJ1 897 aa21.96■■□□□ 1.11
PRPF40A-209ENST00000486100 MB21D1Q8N884 522 aa21.96■■□□□ 1.11
PRPF40A-209ENST00000486100 TRIB2Q92519 343 aa21.96■■□□□ 1.11
PRPF40A-209ENST00000486100 DEFB118Q96PH6 123 aa21.96■■□□□ 1.11
PRPF40A-209ENST00000486100 GOPCQ9HD26 462 aa21.96■■□□□ 1.11
PRPF40A-209ENST00000486100 NYAP2Q9P242 653 aa21.96■■□□□ 1.11
PRPF40A-209ENST00000486100 RPTORQ8N122 1335 aa21.96■■□□□ 1.11
PRPF40A-209ENST00000486100 PDE4DIPQ5VU43 2346 aa21.96■■□□□ 1.11
PRPF40A-209ENST00000486100 DOCK3Q8IZD9 2030 aa21.96■■□□□ 1.11
PRPF40A-209ENST00000486100 MKI67P46013 3256 aaKnown RBP21.95■■□□□ 1.1
PRPF40A-209ENST00000486100 FLOT1O75955 427 aa21.95■■□□□ 1.1
PRPF40A-209ENST00000486100 TFRCP02786 760 aaKnown RBP21.95■■□□□ 1.1
PRPF40A-209ENST00000486100 PTPREP23469 700 aa21.95■■□□□ 1.1
PRPF40A-209ENST00000486100 NUCB1Q02818 461 aa21.95■■□□□ 1.1
PRPF40A-209ENST00000486100 TRIM32Q13049 653 aa21.95■■□□□ 1.1
PRPF40A-209ENST00000486100 MAP2K5Q13163 448 aa21.95■■□□□ 1.1
PRPF40A-209ENST00000486100 WDR78Q5VTH9 848 aa21.95■■□□□ 1.1
PRPF40A-209ENST00000486100 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.95■■□□□ 1.1
PRPF40A-209ENST00000486100 HMX1Q9NP08 348 aaPredicted RBP21.95■■□□□ 1.1
PRPF40A-209ENST00000486100 HELLSQ9NRZ9 838 aa21.95■■□□□ 1.1
PRPF40A-209ENST00000486100 SLC15A5A6NIM6 579 aa21.94■■□□□ 1.1
PRPF40A-209ENST00000486100 PRDM1O75626 825 aa21.94■■□□□ 1.1
PRPF40A-209ENST00000486100 SLC3A2P08195 630 aaKnown RBP21.94■■□□□ 1.1
PRPF40A-209ENST00000486100 PDE4BQ07343 736 aa21.94■■□□□ 1.1
PRPF40A-209ENST00000486100 CCDC129Q6ZRS4 1044 aa21.94■■□□□ 1.1
PRPF40A-209ENST00000486100 UBE2Q1Q7Z7E8 422 aa21.94■■□□□ 1.1
PRPF40A-209ENST00000486100 MOV10L1Q9BXT6 1211 aaKnown RBP21.94■■□□□ 1.1
PRPF40A-209ENST00000486100 IVNS1ABPQ9Y6Y0 642 aa21.94■■□□□ 1.1
PRPF40A-209ENST00000486100 IGKV6D-41A0A0C4DH26 115 aa21.93■■□□□ 1.1
PRPF40A-209ENST00000486100 ZKSCAN1P17029 563 aaPredicted RBP21.93■■□□□ 1.1
PRPF40A-209ENST00000486100 PPARAQ07869 468 aa21.93■■□□□ 1.1
PRPF40A-209ENST00000486100 MAP3K21Q5TCX8 1036 aa21.93■■□□□ 1.1
PRPF40A-209ENST00000486100 ATG4CQ96DT6 458 aa21.93■■□□□ 1.1
PRPF40A-209ENST00000486100 APBA2Q99767 749 aa21.93■■□□□ 1.1
PRPF40A-209ENST00000486100 SPATC1LQ9H0A9 340 aa21.93■■□□□ 1.1
PRPF40A-209ENST00000486100 CRISPLD2Q9H0B8 497 aa21.93■■□□□ 1.1
PRPF40A-209ENST00000486100 TRIM6-TRIM34B2RNG4 842 aa21.92■■□□□ 1.1
PRPF40A-209ENST00000486100 FOXP2O15409 715 aa21.92■■□□□ 1.1
PRPF40A-209ENST00000486100 RAD21O60216 631 aa21.92■■□□□ 1.1
PRPF40A-209ENST00000486100 GRB14Q14449 540 aa21.92■■□□□ 1.1
PRPF40A-209ENST00000486100 PLEKHM2Q8IWE5 1019 aa21.92■■□□□ 1.1
PRPF40A-209ENST00000486100 SHCBP1Q8NEM2 672 aa21.92■■□□□ 1.1
PRPF40A-209ENST00000486100 OSBPL3Q9H4L5 887 aa21.92■■□□□ 1.1
PRPF40A-209ENST00000486100 CLIP2Q9UDT6 1046 aa21.92■■□□□ 1.1
PRPF40A-209ENST00000486100 ADAMTS5Q9UNA0 930 aa21.92■■□□□ 1.1
PRPF40A-209ENST00000486100 F5H6K3 240 aa21.91■■□□□ 1.1
PRPF40A-209ENST00000486100 STRNO43815 780 aa21.91■■□□□ 1.1
PRPF40A-209ENST00000486100 FARP2O94887 1054 aaPredicted RBP21.91■■□□□ 1.1
PRPF40A-209ENST00000486100 PRKAR2AP13861 404 aaKnown RBP21.91■■□□□ 1.1
PRPF40A-209ENST00000486100 KLRC3Q07444 240 aa21.91■■□□□ 1.1
PRPF40A-209ENST00000486100 CCL14Q16627 93 aa21.91■■□□□ 1.1
PRPF40A-209ENST00000486100 MCMDC2Q4G0Z9 681 aa21.91■■□□□ 1.1
PRPF40A-209ENST00000486100 NEDD1Q8NHV4 660 aa21.91■■□□□ 1.1
PRPF40A-209ENST00000486100 MKL1Q969V6 931 aa21.91■■□□□ 1.1
PRPF40A-209ENST00000486100 MTMR4Q9NYA4 1195 aa21.91■■□□□ 1.1
PRPF40A-209ENST00000486100 HOXC6P09630 235 aa21.9■■□□□ 1.1
PRPF40A-209ENST00000486100 ERCC3P19447 782 aa21.9■■□□□ 1.1
PRPF40A-209ENST00000486100 CACNB2Q08289 660 aaPredicted RBP21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms