RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 USP17L15C9J2P7 530 aa9.72□□□□□ -0.85
SF3A1-208ENST00000485618 USP17L13C9JLJ4 530 aa9.72□□□□□ -0.85
SF3A1-208ENST00000485618 USP17L11C9JVI0 530 aa9.72□□□□□ -0.85
SF3A1-208ENST00000485618 USP17L18D6R9N7 530 aa9.72□□□□□ -0.85
SF3A1-208ENST00000485618 USP17L22D6RA61 530 aa9.72□□□□□ -0.85
SF3A1-208ENST00000485618 USP17L17D6RBQ6 530 aa9.72□□□□□ -0.85
SF3A1-208ENST00000485618 USP17L19D6RCP7 530 aa9.72□□□□□ -0.85
SF3A1-208ENST00000485618 USP17L20D6RJB6 530 aa9.72□□□□□ -0.85
SF3A1-208ENST00000485618 PDHXO00330 501 aa9.72□□□□□ -0.85
SF3A1-208ENST00000485618 RAD21O60216 631 aa9.72□□□□□ -0.85
SF3A1-208ENST00000485618 SLURP2P0DP57 97 aa9.72□□□□□ -0.85
SF3A1-208ENST00000485618 TOP1P11387 765 aaKnown RBP9.72□□□□□ -0.85
SF3A1-208ENST00000485618 EEF2P13639 858 aaKnown RBP9.72□□□□□ -0.85
SF3A1-208ENST00000485618 MCM5P33992 734 aa9.72□□□□□ -0.85
SF3A1-208ENST00000485618 HMGCS2P54868 508 aa9.72□□□□□ -0.85
SF3A1-208ENST00000485618 IRX3P78415 501 aaPredicted RBP9.72□□□□□ -0.85
SF3A1-208ENST00000485618 FGD1P98174 961 aa9.72□□□□□ -0.85
SF3A1-208ENST00000485618 SP3Q02447 781 aa9.72□□□□□ -0.85
SF3A1-208ENST00000485618 USP17L24Q0WX57 530 aa9.72□□□□□ -0.85
SF3A1-208ENST00000485618 RRP1BQ14684 758 aaKnown RBP9.72□□□□□ -0.85
SF3A1-208ENST00000485618 NECTIN1Q15223 517 aa9.72□□□□□ -0.85
SF3A1-208ENST00000485618 TSGA10IPQ3SY00 556 aa9.72□□□□□ -0.85
SF3A1-208ENST00000485618 RCSD1Q6JBY9 416 aa9.72□□□□□ -0.85
SF3A1-208ENST00000485618 SMCR8Q8TEV9 937 aaPredicted RBP9.72□□□□□ -0.85
SF3A1-208ENST00000485618 CNKSR2Q8WXI2 1034 aa9.72□□□□□ -0.85
SF3A1-208ENST00000485618 BRI3BPQ8WY22 251 aa9.72□□□□□ -0.85
SF3A1-208ENST00000485618 MKL1Q969V6 931 aa9.72□□□□□ -0.85
SF3A1-208ENST00000485618 EFCC1Q9HA90 598 aa9.72□□□□□ -0.85
SF3A1-208ENST00000485618 ZSWIM5Q9P217 1185 aa9.72□□□□□ -0.85
SF3A1-208ENST00000485618 AGTPBP1Q9UPW5 1226 aa9.72□□□□□ -0.85
SF3A1-208ENST00000485618 B4E1Z4 1266 aa9.71□□□□□ -0.86
SF3A1-208ENST00000485618 E7EWF7 191 aa9.71□□□□□ -0.86
SF3A1-208ENST00000485618 SLC27A2O14975 620 aa9.71□□□□□ -0.86
SF3A1-208ENST00000485618 KDM4AO75164 1064 aa9.71□□□□□ -0.86
SF3A1-208ENST00000485618 HOXA7P31268 230 aaPredicted RBP9.71□□□□□ -0.86
SF3A1-208ENST00000485618 GUCY1A2P33402 732 aa9.71□□□□□ -0.86
SF3A1-208ENST00000485618 GCLCP48506 637 aaPredicted RBP9.71□□□□□ -0.86
SF3A1-208ENST00000485618 KIF22Q14807 665 aa9.71□□□□□ -0.86
SF3A1-208ENST00000485618 TAF1CQ15572 869 aaPredicted RBP9.71□□□□□ -0.86
SF3A1-208ENST00000485618 SYNE3Q6ZMZ3 975 aa9.71□□□□□ -0.86
SF3A1-208ENST00000485618 TBC1D10CQ8IV04 446 aa9.71□□□□□ -0.86
SF3A1-208ENST00000485618 GMCL1P1Q8NEA9 526 aa9.71□□□□□ -0.86
SF3A1-208ENST00000485618 IL27Q8NEV9 243 aa9.71□□□□□ -0.86
SF3A1-208ENST00000485618 ARMC5Q96C12 935 aa9.71□□□□□ -0.86
SF3A1-208ENST00000485618 CEP95Q96GE4 821 aa9.71□□□□□ -0.86
SF3A1-208ENST00000485618 C12orf42Q96LP6 360 aa9.71□□□□□ -0.86
SF3A1-208ENST00000485618 ZSCAN10Q96SZ4 725 aaPredicted RBP9.71□□□□□ -0.86
SF3A1-208ENST00000485618 PTPN18Q99952 460 aa9.71□□□□□ -0.86
SF3A1-208ENST00000485618 VCPKMTQ9H867 229 aa9.71□□□□□ -0.86
SF3A1-208ENST00000485618 KAT14Q9H8E8 782 aa9.71□□□□□ -0.86
SF3A1-208ENST00000485618 CTDP1Q9Y5B0 961 aaPredicted RBP9.71□□□□□ -0.86
SF3A1-208ENST00000485618 PLIN4Q96Q06 1357 aa9.71□□□□□ -0.86
SF3A1-208ENST00000485618 DOCK1Q14185 1865 aa9.7□□□□□ -0.86
SF3A1-208ENST00000485618 MYH8P13535 1937 aa9.7□□□□□ -0.86
SF3A1-208ENST00000485618 HTTP42858 3142 aa9.7□□□□□ -0.86
SF3A1-208ENST00000485618 IGKV6D-41A0A0C4DH26 115 aa9.7□□□□□ -0.86
SF3A1-208ENST00000485618 BTBD19C9JJ37 291 aa9.7□□□□□ -0.86
SF3A1-208ENST00000485618 F5H6K3 240 aa9.7□□□□□ -0.86
SF3A1-208ENST00000485618 WDR46O15213 610 aaKnown RBP9.7□□□□□ -0.86
SF3A1-208ENST00000485618 FDX1P10109 184 aa9.7□□□□□ -0.86
SF3A1-208ENST00000485618 EN2P19622 333 aaPredicted RBP9.7□□□□□ -0.86
SF3A1-208ENST00000485618 HSPA4P34932 840 aa9.7□□□□□ -0.86
SF3A1-208ENST00000485618 KLRC3Q07444 240 aa9.7□□□□□ -0.86
SF3A1-208ENST00000485618 COG2Q14746 738 aa9.7□□□□□ -0.86
SF3A1-208ENST00000485618 HABP4Q5JVS0 413 aaKnown RBP9.7□□□□□ -0.86
SF3A1-208ENST00000485618 IFIT1BQ5T764 474 aaKnown RBP9.7□□□□□ -0.86
SF3A1-208ENST00000485618 CCAR1Q8IX12 1150 aaKnown RBP9.7□□□□□ -0.86
SF3A1-208ENST00000485618 ACER1Q8TDN7 264 aa9.7□□□□□ -0.86
SF3A1-208ENST00000485618 CHURC1Q8WUH1 139 aa9.7□□□□□ -0.86
SF3A1-208ENST00000485618 TMEM87BQ96K49 555 aa9.7□□□□□ -0.86
SF3A1-208ENST00000485618 NEK1Q96PY6 1258 aa9.7□□□□□ -0.86
SF3A1-208ENST00000485618 USP26Q9BXU7 913 aa9.7□□□□□ -0.86
SF3A1-208ENST00000485618 TANGO6Q9C0B7 1094 aa9.7□□□□□ -0.86
SF3A1-208ENST00000485618 IL25Q9H293 177 aa9.7□□□□□ -0.86
SF3A1-208ENST00000485618 PNMA2Q9UL42 364 aa9.7□□□□□ -0.86
SF3A1-208ENST00000485618 ISY1Q9ULR0 285 aaKnown RBP9.7□□□□□ -0.86
SF3A1-208ENST00000485618 DDX60LQ5H9U9 1706 aaKnown RBP9.7□□□□□ -0.86
SF3A1-208ENST00000485618 IFIT3O14879 490 aaKnown RBP9.69□□□□□ -0.86
SF3A1-208ENST00000485618 SLC1A4P43007 532 aa9.69□□□□□ -0.86
SF3A1-208ENST00000485618 ANAPC15P60006 121 aa9.69□□□□□ -0.86
SF3A1-208ENST00000485618 JAG1P78504 1218 aa9.69□□□□□ -0.86
SF3A1-208ENST00000485618 CAP1Q01518 475 aa9.69□□□□□ -0.86
SF3A1-208ENST00000485618 EVX2Q03828 476 aa9.69□□□□□ -0.86
SF3A1-208ENST00000485618 WTAPQ15007 396 aa9.69□□□□□ -0.86
SF3A1-208ENST00000485618 ZYXQ15942 572 aaKnown RBP9.69□□□□□ -0.86
SF3A1-208ENST00000485618 SLC9C1Q4G0N8 1177 aa9.69□□□□□ -0.86
SF3A1-208ENST00000485618 SLFN13Q68D06 897 aa9.69□□□□□ -0.86
SF3A1-208ENST00000485618 BLOC1S2Q6QNY1 142 aa9.69□□□□□ -0.86
SF3A1-208ENST00000485618 DHX32Q7L7V1 743 aaKnown RBP9.69□□□□□ -0.86
SF3A1-208ENST00000485618 CATIPQ7Z7H3 387 aa9.69□□□□□ -0.86
SF3A1-208ENST00000485618 MB21D1Q8N884 522 aa9.69□□□□□ -0.86
SF3A1-208ENST00000485618 WDR19Q8NEZ3 1342 aa9.69□□□□□ -0.86
SF3A1-208ENST00000485618 DCAF4Q8WV16 495 aa9.69□□□□□ -0.86
SF3A1-208ENST00000485618 ANKS1AQ92625 1134 aa9.69□□□□□ -0.86
SF3A1-208ENST00000485618 GMCL1Q96IK5 515 aa9.69□□□□□ -0.86
SF3A1-208ENST00000485618 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.69□□□□□ -0.86
SF3A1-208ENST00000485618 TMEM106CQ9BVX2 250 aa9.69□□□□□ -0.86
SF3A1-208ENST00000485618 INCENPQ9NQS7 918 aa9.69□□□□□ -0.86
SF3A1-208ENST00000485618 EMILIN3Q9NT22 766 aa9.69□□□□□ -0.86
SF3A1-208ENST00000485618 FEM1BQ9UK73 627 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms