RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ASB11Q8WXH4 323 aa9.63□□□□□ -0.87
USP40-213ENST00000483216 SEMA3GQ9NS98 782 aa9.63□□□□□ -0.87
USP40-213ENST00000483216 PITPNM2Q9BZ72 1349 aa9.62□□□□□ -0.87
USP40-213ENST00000483216 RBAK-RBAKDNI3L0D1 243 aa9.62□□□□□ -0.87
USP40-213ENST00000483216 ARID5AQ03989 594 aa9.62□□□□□ -0.87
USP40-213ENST00000483216 CDKAL1Q5VV42 579 aa9.62□□□□□ -0.87
USP40-213ENST00000483216 RUFY4Q6ZNE9 571 aa9.62□□□□□ -0.87
USP40-213ENST00000483216 THAP5Q7Z6K1 395 aa9.62□□□□□ -0.87
USP40-213ENST00000483216 WFDC3Q8IUB2 231 aa9.62□□□□□ -0.87
USP40-213ENST00000483216 TMEM192Q8IY95 271 aa9.62□□□□□ -0.87
USP40-213ENST00000483216 HSPA12BQ96MM6 686 aa9.62□□□□□ -0.87
USP40-213ENST00000483216 LRRN2O75325 713 aa9.61□□□□□ -0.87
USP40-213ENST00000483216 CLEC3AO75596 197 aa9.61□□□□□ -0.87
USP40-213ENST00000483216 BNIP3Q12983 259 aa9.61□□□□□ -0.87
USP40-213ENST00000483216 NBPF12Q5TAG4 269 aaPredicted RBP9.61□□□□□ -0.87
USP40-213ENST00000483216 C19orf47Q8N9M1 422 aaKnown RBP9.61□□□□□ -0.87
USP40-213ENST00000483216 FLCNQ8NFG4 579 aa9.61□□□□□ -0.87
USP40-213ENST00000483216 DHRS1Q96LJ7 313 aa9.61□□□□□ -0.87
USP40-213ENST00000483216 GMLQ99445 158 aa9.61□□□□□ -0.87
USP40-213ENST00000483216 GPR62Q9BZJ7 368 aa9.61□□□□□ -0.87
USP40-213ENST00000483216 SPRED2Q7Z698 418 aa9.6□□□□□ -0.87
USP40-213ENST00000483216 NPM2Q86SE8 214 aaKnown RBP9.6□□□□□ -0.87
USP40-213ENST00000483216 NBPF11Q86T75 865 aa9.6□□□□□ -0.87
USP40-213ENST00000483216 SLC6A18Q96N87 628 aa9.6□□□□□ -0.87
USP40-213ENST00000483216 PAK6Q9NQU5 681 aaPredicted RBP9.6□□□□□ -0.87
USP40-213ENST00000483216 SUCOQ9UBS9 1254 aaKnown RBP9.6□□□□□ -0.87
USP40-213ENST00000483216 FGRP09769 529 aa9.59□□□□□ -0.87
USP40-213ENST00000483216 CD8BP10966 210 aa9.59□□□□□ -0.87
USP40-213ENST00000483216 SRFP11831 508 aa9.59□□□□□ -0.87
USP40-213ENST00000483216 GP2P55259 537 aaKnown RBP9.59□□□□□ -0.87
USP40-213ENST00000483216 UNC5AQ6ZN44 842 aa9.59□□□□□ -0.87
USP40-213ENST00000483216 C8orf37Q96NL8 207 aa9.59□□□□□ -0.87
USP40-213ENST00000483216 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.59□□□□□ -0.87
USP40-213ENST00000483216 DUSP15Q9H1R2 295 aaPredicted RBP9.59□□□□□ -0.87
USP40-213ENST00000483216 TRIT1Q9H3H1 467 aaKnown RBP9.59□□□□□ -0.87
USP40-213ENST00000483216 SLC12A7Q9Y666 1083 aa9.59□□□□□ -0.87
USP40-213ENST00000483216 H3BS24 57 aa9.58□□□□□ -0.88
USP40-213ENST00000483216 ZYXQ15942 572 aaKnown RBP9.58□□□□□ -0.88
USP40-213ENST00000483216 NAALADL2Q58DX5 795 aa9.58□□□□□ -0.88
USP40-213ENST00000483216 ZNF574Q6ZN55 896 aaPredicted RBP9.58□□□□□ -0.88
USP40-213ENST00000483216 AGBL5Q8NDL9 886 aa9.58□□□□□ -0.88
USP40-213ENST00000483216 SSBP05455 408 aaKnown RBP eCLIP9.57□□□□□ -0.88
USP40-213ENST00000483216 DNAJA1P31689 397 aaKnown RBP9.57□□□□□ -0.88
USP40-213ENST00000483216 PMS1P54277 932 aaKnown RBP9.57□□□□□ -0.88
USP40-213ENST00000483216 CASP7P55210 303 aa9.57□□□□□ -0.88
USP40-213ENST00000483216 NBPF9Q3BBW0 867 aa9.57□□□□□ -0.88
USP40-213ENST00000483216 TTC6Q86TZ1 520 aa9.57□□□□□ -0.88
USP40-213ENST00000483216 TP53INP2Q8IXH6 220 aa9.57□□□□□ -0.88
USP40-213ENST00000483216 UBE2FQ969M7 185 aa9.57□□□□□ -0.88
USP40-213ENST00000483216 A0A1W2PQH9 124 aa9.56□□□□□ -0.88
USP40-213ENST00000483216 FAM86C2PA6NEL3 165 aa9.56□□□□□ -0.88
USP40-213ENST00000483216 CD96P40200 585 aa9.56□□□□□ -0.88
USP40-213ENST00000483216 ANGEL2Q5VTE6 544 aaKnown RBP9.56□□□□□ -0.88
USP40-213ENST00000483216 MCF2L2Q86YR7 1114 aa9.56□□□□□ -0.88
USP40-213ENST00000483216 FAM169BQ8N8A8 192 aa9.56□□□□□ -0.88
USP40-213ENST00000483216 ANAPC16Q96DE5 110 aa9.56□□□□□ -0.88
USP40-213ENST00000483216 ZNF512BQ96KM6 892 aaPredicted RBP9.56□□□□□ -0.88
USP40-213ENST00000483216 ATP13A1Q9HD20 1204 aa9.56□□□□□ -0.88
USP40-213ENST00000483216 GPATCH2Q9NW75 528 aa9.56□□□□□ -0.88
USP40-213ENST00000483216 ZSWIM5Q9P217 1185 aa9.56□□□□□ -0.88
USP40-213ENST00000483216 IKZF1Q13422 519 aa9.55□□□□□ -0.88
USP40-213ENST00000483216 BBS9Q3SYG4 887 aa9.55□□□□□ -0.88
USP40-213ENST00000483216 TMPRSS7Q7RTY8 843 aa9.55□□□□□ -0.88
USP40-213ENST00000483216 SMARCC1Q92922 1105 aaPredicted RBP9.55□□□□□ -0.88
USP40-213ENST00000483216 MKRN2Q9H000 416 aaKnown RBP9.55□□□□□ -0.88
USP40-213ENST00000483216 LMCD1Q9NZU5 365 aa9.55□□□□□ -0.88
USP40-213ENST00000483216 ZNF214Q9UL59 606 aaPredicted RBP9.55□□□□□ -0.88
USP40-213ENST00000483216 LTBP3Q9NS15 1303 aa9.55□□□□□ -0.88
USP40-213ENST00000483216 LOC100996750A0A140TA64 210 aa9.54□□□□□ -0.88
USP40-213ENST00000483216 FUT4P22083 530 aa9.54□□□□□ -0.88
USP40-213ENST00000483216 GAB4Q2WGN9 574 aa9.54□□□□□ -0.88
USP40-213ENST00000483216 TSPYL5Q86VY4 417 aaPredicted RBP9.54□□□□□ -0.88
USP40-213ENST00000483216 ENOX1Q8TC92 643 aaKnown RBP9.54□□□□□ -0.88
USP40-213ENST00000483216 KRTAP4-6Q9BYQ5 205 aa9.54□□□□□ -0.88
USP40-213ENST00000483216 PHAXQ9H814 394 aaKnown RBP9.54□□□□□ -0.88
USP40-213ENST00000483216 OAS3Q9Y6K5 1087 aaKnown RBP9.54□□□□□ -0.88
USP40-213ENST00000483216 TPP2P29144 1249 aaPredicted RBP9.53□□□□□ -0.88
USP40-213ENST00000483216 NMIQ13287 307 aaPredicted RBP9.53□□□□□ -0.88
USP40-213ENST00000483216 PPFIBP1Q86W92 1011 aa9.53□□□□□ -0.88
USP40-213ENST00000483216 ASCC2Q9H1I8 757 aaPredicted RBP9.53□□□□□ -0.88
USP40-213ENST00000483216 MRVI1Q9Y6F6 885 aa9.53□□□□□ -0.88
USP40-213ENST00000483216 C9IYK1 514 aa9.52□□□□□ -0.89
USP40-213ENST00000483216 AUHQ13825 339 aaKnown RBP9.52□□□□□ -0.89
USP40-213ENST00000483216 PPP2R5EQ16537 467 aa9.52□□□□□ -0.89
USP40-213ENST00000483216 ANKRD39Q53RE8 183 aa9.52□□□□□ -0.89
USP40-213ENST00000483216 SHISA3A0PJX4 238 aa9.51□□□□□ -0.89
USP40-213ENST00000483216 WASH4PA8MWX3 477 aa9.51□□□□□ -0.89
USP40-213ENST00000483216 ESR1P03372 595 aa9.51□□□□□ -0.89
USP40-213ENST00000483216 ETFBP38117 255 aa9.51□□□□□ -0.89
USP40-213ENST00000483216 ZP2Q05996 745 aa9.51□□□□□ -0.89
USP40-213ENST00000483216 PLCL1Q15111 1095 aa9.51□□□□□ -0.89
USP40-213ENST00000483216 CLEC16AQ2KHT3 1053 aa9.51□□□□□ -0.89
USP40-213ENST00000483216 TNNI3KQ59H18 835 aa9.51□□□□□ -0.89
USP40-213ENST00000483216 CCDC144CPQ8IYA2 1237 aa9.51□□□□□ -0.89
USP40-213ENST00000483216 ABI1Q8IZP0 508 aa9.51□□□□□ -0.89
USP40-213ENST00000483216 SYTL5Q8TDW5 730 aaPredicted RBP9.51□□□□□ -0.89
USP40-213ENST00000483216 PRDM14Q9GZV8 571 aa9.51□□□□□ -0.89
USP40-213ENST00000483216 PRR13Q9NZ81 148 aa9.51□□□□□ -0.89
USP40-213ENST00000483216 PRKAG3Q9UGI9 489 aa9.51□□□□□ -0.89
USP40-213ENST00000483216 PCDHB12Q9Y5F1 795 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms