RNA–Protein interactions for RNA: ENST00000482251.2

CPSF4-212, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 574 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-212ENST00000482251 MAPK4P31152 587 aa12.55□□□□□ -0.4
CPSF4-212ENST00000482251 NUDT12Q9BQG2 462 aa12.55□□□□□ -0.4
CPSF4-212ENST00000482251 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.55□□□□□ -0.4
CPSF4-212ENST00000482251 GREB1LQ9C091 1923 aaPredicted RBP12.54□□□□□ -0.4
CPSF4-212ENST00000482251 PRDM1O75626 825 aa12.54□□□□□ -0.4
CPSF4-212ENST00000482251 EEF2P13639 858 aaKnown RBP12.54□□□□□ -0.4
CPSF4-212ENST00000482251 PRKAR2AP13861 404 aaKnown RBP12.54□□□□□ -0.4
CPSF4-212ENST00000482251 ZKSCAN1P17029 563 aaPredicted RBP12.54□□□□□ -0.4
CPSF4-212ENST00000482251 CCL14Q16627 93 aa12.54□□□□□ -0.4
CPSF4-212ENST00000482251 CCDC129Q6ZRS4 1044 aa12.54□□□□□ -0.4
CPSF4-212ENST00000482251 PLEKHH3Q7Z736 793 aa12.54□□□□□ -0.4
CPSF4-212ENST00000482251 SIAH1Q8IUQ4 282 aa12.54□□□□□ -0.4
CPSF4-212ENST00000482251 PAK6Q9NQU5 681 aaPredicted RBP12.54□□□□□ -0.4
CPSF4-212ENST00000482251 PCDH10Q9P2E7 1040 aa12.54□□□□□ -0.4
CPSF4-212ENST00000482251 RABGAP1Q9Y3P9 1069 aa12.54□□□□□ -0.4
CPSF4-212ENST00000482251 SALL3Q9BXA9 1300 aa12.54□□□□□ -0.4
CPSF4-212ENST00000482251 RLFQ13129 1914 aa12.54□□□□□ -0.4
CPSF4-212ENST00000482251 ROBO3Q96MS0 1386 aa12.54□□□□□ -0.4
CPSF4-212ENST00000482251 PARP14Q460N5 1801 aa12.53□□□□□ -0.4
CPSF4-212ENST00000482251 FLOT1O75955 427 aa12.53□□□□□ -0.4
CPSF4-212ENST00000482251 SGPL1O95470 568 aa12.53□□□□□ -0.4
CPSF4-212ENST00000482251 TFRCP02786 760 aaKnown RBP12.53□□□□□ -0.4
CPSF4-212ENST00000482251 RASA1P20936 1047 aa12.53□□□□□ -0.4
CPSF4-212ENST00000482251 CCNA1P78396 465 aa12.53□□□□□ -0.4
CPSF4-212ENST00000482251 PLS1Q14651 629 aa12.53□□□□□ -0.4
CPSF4-212ENST00000482251 MORN1Q5T089 497 aa12.53□□□□□ -0.4
CPSF4-212ENST00000482251 DIS3LQ8TF46 1054 aaKnown RBP12.53□□□□□ -0.4
CPSF4-212ENST00000482251 ATG4CQ96DT6 458 aa12.53□□□□□ -0.4
CPSF4-212ENST00000482251 CCDC17Q96LX7 622 aa12.53□□□□□ -0.4
CPSF4-212ENST00000482251 APBA2Q99767 749 aa12.53□□□□□ -0.4
CPSF4-212ENST00000482251 LNPKQ9C0E8 428 aa12.53□□□□□ -0.4
CPSF4-212ENST00000482251 SH2D4AQ9H788 454 aa12.53□□□□□ -0.4
CPSF4-212ENST00000482251 VCPKMTQ9H867 229 aa12.53□□□□□ -0.4
CPSF4-212ENST00000482251 TMX2Q9Y320 296 aa12.53□□□□□ -0.4
CPSF4-212ENST00000482251 RGS2P41220 211 aa12.52□□□□□ -0.41
CPSF4-212ENST00000482251 HDAC1Q13547 482 aaPredicted RBP12.52□□□□□ -0.41
CPSF4-212ENST00000482251 LRRFIP1Q32MZ4 808 aaKnown RBP12.52□□□□□ -0.41
CPSF4-212ENST00000482251 SBK1Q52WX2 424 aa12.52□□□□□ -0.41
CPSF4-212ENST00000482251 B4GALNT3Q6L9W6 998 aa12.52□□□□□ -0.41
CPSF4-212ENST00000482251 LBX2Q6XYB7 198 aa12.52□□□□□ -0.41
CPSF4-212ENST00000482251 EXOC6Q8TAG9 804 aa12.52□□□□□ -0.41
CPSF4-212ENST00000482251 LPAR1Q92633 364 aa12.52□□□□□ -0.41
CPSF4-212ENST00000482251 DPF3Q92784 378 aa12.52□□□□□ -0.41
CPSF4-212ENST00000482251 GCC1Q96CN9 775 aa12.52□□□□□ -0.41
CPSF4-212ENST00000482251 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.52□□□□□ -0.41
CPSF4-212ENST00000482251 MKNK2Q9HBH9 465 aa12.52□□□□□ -0.41
CPSF4-212ENST00000482251 HMX1Q9NP08 348 aaPredicted RBP12.52□□□□□ -0.41
CPSF4-212ENST00000482251 FBXO28Q9NVF7 368 aa12.52□□□□□ -0.41
CPSF4-212ENST00000482251 IVNS1ABPQ9Y6Y0 642 aa12.52□□□□□ -0.41
CPSF4-212ENST00000482251 COL11A1P12107 1806 aaPredicted RBP12.52□□□□□ -0.41
CPSF4-212ENST00000482251 H0YGN5 161 aa12.51□□□□□ -0.41
CPSF4-212ENST00000482251 WDR46O15213 610 aaKnown RBP12.51□□□□□ -0.41
CPSF4-212ENST00000482251 GNAT2P19087 354 aa12.51□□□□□ -0.41
CPSF4-212ENST00000482251 PDE1AP54750 535 aa12.51□□□□□ -0.41
CPSF4-212ENST00000482251 MAP2K5Q13163 448 aa12.51□□□□□ -0.41
CPSF4-212ENST00000482251 COG2Q14746 738 aa12.51□□□□□ -0.41
CPSF4-212ENST00000482251 ZMYM1Q5SVZ6 1142 aa12.51□□□□□ -0.41
CPSF4-212ENST00000482251 FAM83BQ5T0W9 1011 aa12.51□□□□□ -0.41
CPSF4-212ENST00000482251 GIMAP6Q6P9H5 292 aa12.51□□□□□ -0.41
CPSF4-212ENST00000482251 UBE2Q1Q7Z7E8 422 aa12.51□□□□□ -0.41
CPSF4-212ENST00000482251 IFNL3Q8IZI9 196 aa12.51□□□□□ -0.41
CPSF4-212ENST00000482251 USP6NLQ92738 828 aa12.51□□□□□ -0.41
CPSF4-212ENST00000482251 NUP88Q99567 741 aaPredicted RBP12.51□□□□□ -0.41
CPSF4-212ENST00000482251 MOV10L1Q9BXT6 1211 aaKnown RBP12.51□□□□□ -0.41
CPSF4-212ENST00000482251 NAPBQ9H115 298 aa12.51□□□□□ -0.41
CPSF4-212ENST00000482251 KANSL2Q9H9L4 492 aa12.51□□□□□ -0.41
CPSF4-212ENST00000482251 GOPCQ9HD26 462 aa12.51□□□□□ -0.41
CPSF4-212ENST00000482251 FLRT1Q9NZU1 646 aa12.51□□□□□ -0.41
CPSF4-212ENST00000482251 RPTORQ8N122 1335 aa12.51□□□□□ -0.41
CPSF4-212ENST00000482251 MYH4Q9Y623 1939 aa12.5□□□□□ -0.41
CPSF4-212ENST00000482251 ERCC3P19447 782 aa12.5□□□□□ -0.41
CPSF4-212ENST00000482251 PTPREP23469 700 aa12.5□□□□□ -0.41
CPSF4-212ENST00000482251 CCND3P30281 292 aaPredicted RBP12.5□□□□□ -0.41
CPSF4-212ENST00000482251 DSG3P32926 999 aa12.5□□□□□ -0.41
CPSF4-212ENST00000482251 CACNB2Q08289 660 aaPredicted RBP12.5□□□□□ -0.41
CPSF4-212ENST00000482251 PAWRQ96IZ0 340 aaKnown RBP12.5□□□□□ -0.41
CPSF4-212ENST00000482251 SPATC1LQ9H0A9 340 aa12.5□□□□□ -0.41
CPSF4-212ENST00000482251 FRMPD3Q5JV73 1810 aa12.5□□□□□ -0.41
CPSF4-212ENST00000482251 ZNF236Q9UL36 1845 aa12.5□□□□□ -0.41
CPSF4-212ENST00000482251 ALPK3Q96L96 1907 aa12.49□□□□□ -0.41
CPSF4-212ENST00000482251 PATL2C9JE40 543 aaKnown RBP12.49□□□□□ -0.41
CPSF4-212ENST00000482251 FOXP2O15409 715 aa12.49□□□□□ -0.41
CPSF4-212ENST00000482251 XRCC5P13010 732 aaKnown RBP12.49□□□□□ -0.41
CPSF4-212ENST00000482251 GRB14Q14449 540 aa12.49□□□□□ -0.41
CPSF4-212ENST00000482251 FAM47AQ5JRC9 791 aa12.49□□□□□ -0.41
CPSF4-212ENST00000482251 MAP3K21Q5TCX8 1036 aa12.49□□□□□ -0.41
CPSF4-212ENST00000482251 VPS53Q5VIR6 699 aa12.49□□□□□ -0.41
CPSF4-212ENST00000482251 NCAPG2Q86XI2 1143 aa12.49□□□□□ -0.41
CPSF4-212ENST00000482251 LRRC47Q8N1G4 583 aaKnown RBP12.49□□□□□ -0.41
CPSF4-212ENST00000482251 NPLOC4Q8TAT6 608 aa12.49□□□□□ -0.41
CPSF4-212ENST00000482251 CHMP4CQ96CF2 233 aa12.49□□□□□ -0.41
CPSF4-212ENST00000482251 EVI5LQ96CN4 794 aa12.49□□□□□ -0.41
CPSF4-212ENST00000482251 HTATIP2Q9BUP3 242 aa12.49□□□□□ -0.41
CPSF4-212ENST00000482251 NACAP1Q9BZK3 213 aa12.49□□□□□ -0.41
CPSF4-212ENST00000482251 CRISPLD2Q9H0B8 497 aa12.49□□□□□ -0.41
CPSF4-212ENST00000482251 HOXC10Q9NYD6 342 aa12.49□□□□□ -0.41
CPSF4-212ENST00000482251 A0A0D9SFI3 127 aa12.48□□□□□ -0.41
CPSF4-212ENST00000482251 SLC15A5A6NIM6 579 aa12.48□□□□□ -0.41
CPSF4-212ENST00000482251 TRIM6-TRIM34B2RNG4 842 aa12.48□□□□□ -0.41
CPSF4-212ENST00000482251 IGHDP01880 384 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms