RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 SEPT2Q15019 361 aa11.83□□□□□ -0.52
USP39-215ENST00000481409 TRIM22Q8IYM9 498 aa11.83□□□□□ -0.52
USP39-215ENST00000481409 DCAF4Q8WV16 495 aa11.83□□□□□ -0.52
USP39-215ENST00000481409 WDR18Q9BV38 432 aa11.83□□□□□ -0.52
USP39-215ENST00000481409 RNF26Q9BY78 433 aaPredicted RBP11.83□□□□□ -0.52
USP39-215ENST00000481409 RRAGCQ9HB90 399 aa11.83□□□□□ -0.52
USP39-215ENST00000481409 GOPCQ9HD26 462 aa11.83□□□□□ -0.52
USP39-215ENST00000481409 CHMP5Q9NZZ3 219 aa11.83□□□□□ -0.52
USP39-215ENST00000481409 TMX2Q9Y320 296 aa11.83□□□□□ -0.52
USP39-215ENST00000481409 ATAD5Q96QE3 1844 aa11.83□□□□□ -0.52
USP39-215ENST00000481409 FAM196BA6NMK8 535 aa11.82□□□□□ -0.52
USP39-215ENST00000481409 GDF11O95390 407 aa11.82□□□□□ -0.52
USP39-215ENST00000481409 PARP1P09874 1014 aaKnown RBP11.82□□□□□ -0.52
USP39-215ENST00000481409 EEF2P13639 858 aaKnown RBP11.82□□□□□ -0.52
USP39-215ENST00000481409 CCT2P78371 535 aaKnown RBP11.82□□□□□ -0.52
USP39-215ENST00000481409 MAP3K9P80192 1104 aa11.82□□□□□ -0.52
USP39-215ENST00000481409 RAB3GAP1Q15042 981 aa11.82□□□□□ -0.52
USP39-215ENST00000481409 ARMC9Q7Z3E5 817 aa11.82□□□□□ -0.52
USP39-215ENST00000481409 NECAB1Q8N987 351 aa11.82□□□□□ -0.52
USP39-215ENST00000481409 FAM184AQ8NB25 1140 aa11.82□□□□□ -0.52
USP39-215ENST00000481409 NSUN7Q8NE18 718 aaKnown RBP11.82□□□□□ -0.52
USP39-215ENST00000481409 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.82□□□□□ -0.52
USP39-215ENST00000481409 NUP133Q8WUM0 1156 aa11.82□□□□□ -0.52
USP39-215ENST00000481409 LPAR1Q92633 364 aa11.82□□□□□ -0.52
USP39-215ENST00000481409 CDCA5Q96FF9 252 aa11.82□□□□□ -0.52
USP39-215ENST00000481409 GMCL1Q96IK5 515 aa11.82□□□□□ -0.52
USP39-215ENST00000481409 LARP6Q9BRS8 491 aaKnown RBP11.82□□□□□ -0.52
USP39-215ENST00000481409 SENP2Q9HC62 589 aa11.82□□□□□ -0.52
USP39-215ENST00000481409 PICK1Q9NRD5 415 aa11.82□□□□□ -0.52
USP39-215ENST00000481409 CLEC11AQ9Y240 323 aa11.82□□□□□ -0.52
USP39-215ENST00000481409 SSC5DA1L4H1 1573 aa11.81□□□□□ -0.52
USP39-215ENST00000481409 PTPDC1A2A3K4 754 aa11.81□□□□□ -0.52
USP39-215ENST00000481409 PALM3A6NDB9 673 aaPredicted RBP11.81□□□□□ -0.52
USP39-215ENST00000481409 C19orf81C9J6K1 198 aa11.81□□□□□ -0.52
USP39-215ENST00000481409 USP2O75604 605 aaPredicted RBP11.81□□□□□ -0.52
USP39-215ENST00000481409 DEXIO95424 95 aa11.81□□□□□ -0.52
USP39-215ENST00000481409 FMNL1O95466 1100 aaPredicted RBP11.81□□□□□ -0.52
USP39-215ENST00000481409 PDHBP11177 359 aa11.81□□□□□ -0.52
USP39-215ENST00000481409 XBP1P17861 261 aa11.81□□□□□ -0.52
USP39-215ENST00000481409 GJB2P29033 226 aa11.81□□□□□ -0.52
USP39-215ENST00000481409 SLC4A3P48751 1232 aa11.81□□□□□ -0.52
USP39-215ENST00000481409 USP14P54578 494 aa11.81□□□□□ -0.52
USP39-215ENST00000481409 AKAP17AQ02040 695 aaKnown RBP11.81□□□□□ -0.52
USP39-215ENST00000481409 SSRP1Q08945 709 aaKnown RBP11.81□□□□□ -0.52
USP39-215ENST00000481409 ST3GAL1Q11201 340 aa11.81□□□□□ -0.52
USP39-215ENST00000481409 NTRK3Q16288 839 aa11.81□□□□□ -0.52
USP39-215ENST00000481409 TMTC3Q6ZXV5 915 aa11.81□□□□□ -0.52
USP39-215ENST00000481409 CDAN1Q8IWY9 1227 aa11.81□□□□□ -0.52
USP39-215ENST00000481409 ANKRD13AQ8IZ07 590 aa11.81□□□□□ -0.52
USP39-215ENST00000481409 RBM46Q8TBY0 533 aaKnown RBP11.81□□□□□ -0.52
USP39-215ENST00000481409 WRNIP1Q96S55 665 aa11.81□□□□□ -0.52
USP39-215ENST00000481409 SPZ1Q9BXG8 430 aa11.81□□□□□ -0.52
USP39-215ENST00000481409 KIAA1683Q9H0B3 1180 aa11.81□□□□□ -0.52
USP39-215ENST00000481409 FAM217BQ9NTX9 383 aaPredicted RBP11.81□□□□□ -0.52
USP39-215ENST00000481409 CSADQ9Y600 493 aa11.81□□□□□ -0.52
USP39-215ENST00000481409 ADM5C9JUS6 153 aa11.8□□□□□ -0.52
USP39-215ENST00000481409 hCG_1984214I3L0E3 225 aa11.8□□□□□ -0.52
USP39-215ENST00000481409 PRPF3O43395 683 aaKnown RBP11.8□□□□□ -0.52
USP39-215ENST00000481409 PLA2G6O60733 806 aa11.8□□□□□ -0.52
USP39-215ENST00000481409 CTDNEP1O95476 244 aa11.8□□□□□ -0.52
USP39-215ENST00000481409 CDC27P30260 824 aa11.8□□□□□ -0.52
USP39-215ENST00000481409 ADD1P35611 737 aaKnown RBP11.8□□□□□ -0.52
USP39-215ENST00000481409 TRAF1Q13077 416 aa11.8□□□□□ -0.52
USP39-215ENST00000481409 RRP1BQ14684 758 aaKnown RBP11.8□□□□□ -0.52
USP39-215ENST00000481409 SIAH1Q8IUQ4 282 aa11.8□□□□□ -0.52
USP39-215ENST00000481409 TEX2Q8IWB9 1127 aa11.8□□□□□ -0.52
USP39-215ENST00000481409 ZNF713Q8N859 430 aaPredicted RBP11.8□□□□□ -0.52
USP39-215ENST00000481409 VCPKMTQ9H867 229 aa11.8□□□□□ -0.52
USP39-215ENST00000481409 NCOA5Q9HCD5 579 aaKnown RBP11.8□□□□□ -0.52
USP39-215ENST00000481409 MAD2L2Q9UI95 211 aa11.8□□□□□ -0.52
USP39-215ENST00000481409 PAPPA2Q9BXP8 1791 aa11.79□□□□□ -0.52
USP39-215ENST00000481409 USP17L10C9JJH3 530 aa11.79□□□□□ -0.52
USP39-215ENST00000481409 F5H6K3 240 aa11.79□□□□□ -0.52
USP39-215ENST00000481409 PTPRAP18433 802 aa11.79□□□□□ -0.52
USP39-215ENST00000481409 SLC1A4P43007 532 aa11.79□□□□□ -0.52
USP39-215ENST00000481409 KLRC3Q07444 240 aa11.79□□□□□ -0.52
USP39-215ENST00000481409 ZNF543Q08ER8 600 aa11.79□□□□□ -0.52
USP39-215ENST00000481409 SLFN13Q68D06 897 aa11.79□□□□□ -0.52
USP39-215ENST00000481409 CHADLQ6NUI6 762 aa11.79□□□□□ -0.52
USP39-215ENST00000481409 SAMD1Q6SPF0 538 aaPredicted RBP11.79□□□□□ -0.52
USP39-215ENST00000481409 NBPF11Q86T75 865 aa11.79□□□□□ -0.52
USP39-215ENST00000481409 MYL10Q9BUA6 226 aa11.79□□□□□ -0.52
USP39-215ENST00000481409 ORC3Q9UBD5 711 aaPredicted RBP11.79□□□□□ -0.52
USP39-215ENST00000481409 ATP6V1DQ9Y5K8 247 aa11.79□□□□□ -0.52
USP39-215ENST00000481409 SRCAPQ6ZRS2 3230 aa11.79□□□□□ -0.52
USP39-215ENST00000481409 WDR33Q9C0J8 1336 aaKnown RBP11.79□□□□□ -0.52
USP39-215ENST00000481409 KLRF2D3W0D1 207 aa11.78□□□□□ -0.52
USP39-215ENST00000481409 FDX1P10109 184 aa11.78□□□□□ -0.52
USP39-215ENST00000481409 INPP5BP32019 993 aa11.78□□□□□ -0.52
USP39-215ENST00000481409 ATP2B2Q01814 1243 aa11.78□□□□□ -0.52
USP39-215ENST00000481409 PPATQ06203 517 aa11.78□□□□□ -0.52
USP39-215ENST00000481409 FUT2Q10981 343 aa11.78□□□□□ -0.52
USP39-215ENST00000481409 LARP1BQ659C4 914 aaKnown RBP11.78□□□□□ -0.52
USP39-215ENST00000481409 USP17L2Q6R6M4 530 aa11.78□□□□□ -0.52
USP39-215ENST00000481409 BTNL9Q6UXG8 535 aa11.78□□□□□ -0.52
USP39-215ENST00000481409 FAM160B2Q86V87 743 aa11.78□□□□□ -0.52
USP39-215ENST00000481409 LRRC47Q8N1G4 583 aaKnown RBP11.78□□□□□ -0.52
USP39-215ENST00000481409 ZNF280CQ8ND82 737 aa11.78□□□□□ -0.52
USP39-215ENST00000481409 CHURC1Q8WUH1 139 aa11.78□□□□□ -0.52
USP39-215ENST00000481409 C12orf42Q96LP6 360 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms