RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 MED4Q9NPJ6 270 aa15.12■□□□□ 0.01
USP42-206ENST00000479544 VIMP08670 466 aaKnown RBP15.12■□□□□ 0.01
USP42-206ENST00000479544 APOA5Q6Q788 366 aa15.12■□□□□ 0.01
USP42-206ENST00000479544 DYMQ7RTS9 669 aa15.12■□□□□ 0.01
USP42-206ENST00000479544 TMEM87BQ96K49 555 aa15.12■□□□□ 0.01
USP42-206ENST00000479544 IFIH1Q9BYX4 1025 aaKnown RBP15.12■□□□□ 0.01
USP42-206ENST00000479544 CAVIN4Q5BKX8 364 aa15.12■□□□□ 0.01
USP42-206ENST00000479544 PCDHB6Q9Y5E3 794 aa15.12■□□□□ 0.01
USP42-206ENST00000479544 LAMC1P11047 1609 aa15.11■□□□□ 0.01
USP42-206ENST00000479544 KRT13P13646 458 aa15.11■□□□□ 0.01
USP42-206ENST00000479544 ATP6V1AP38606 617 aa15.11■□□□□ 0.01
USP42-206ENST00000479544 MORC3Q14149 939 aa15.11■□□□□ 0.01
USP42-206ENST00000479544 CEP85LQ5SZL2 805 aa15.11■□□□□ 0.01
USP42-206ENST00000479544 UHMK1Q8TAS1 419 aaKnown RBP15.11■□□□□ 0.01
USP42-206ENST00000479544 SYMPKQ92797 1274 aaKnown RBP15.11■□□□□ 0.01
USP42-206ENST00000479544 TULP4Q9NRJ4 1543 aa15.11■□□□□ 0.01
USP42-206ENST00000479544 PLCD1P51178 756 aa15.11■□□□□ 0.01
USP42-206ENST00000479544 RRAGAQ7L523 313 aa15.11■□□□□ 0.01
USP42-206ENST00000479544 DZIP1Q86YF9 867 aaKnown RBP15.11■□□□□ 0.01
USP42-206ENST00000479544 UBR1Q8IWV7 1749 aa15.11■□□□□ 0.01
USP42-206ENST00000479544 ZCRB1Q8TBF4 217 aaKnown RBP15.11■□□□□ 0.01
USP42-206ENST00000479544 COPRSQ9NQ92 184 aa15.11■□□□□ 0.01
USP42-206ENST00000479544 CDK12Q9NYV4 1490 aaPredicted RBP15.11■□□□□ 0.01
USP42-206ENST00000479544 BMP15O95972 392 aa15.11■□□□□ 0.01
USP42-206ENST00000479544 AMPD3Q01432 767 aa15.11■□□□□ 0.01
USP42-206ENST00000479544 ZMYM1Q5SVZ6 1142 aa15.11■□□□□ 0.01
USP42-206ENST00000479544 SRLQ86TD4 932 aa15.11■□□□□ 0.01
USP42-206ENST00000479544 VPS36Q86VN1 386 aa15.11■□□□□ 0.01
USP42-206ENST00000479544 POTEDQ86YR6 584 aa15.11■□□□□ 0.01
USP42-206ENST00000479544 KIF28PB7ZC32 967 aa15.1■□□□□ 0.01
USP42-206ENST00000479544 TFRCP02786 760 aaKnown RBP15.1■□□□□ 0.01
USP42-206ENST00000479544 TMX4Q9H1E5 349 aaPredicted RBP15.1■□□□□ 0.01
USP42-206ENST00000479544 FGFR1OPO95684 399 aaKnown RBP15.1■□□□□ 0.01
USP42-206ENST00000479544 UQCRFS1P1P0C7P4 283 aa15.1■□□□□ 0.01
USP42-206ENST00000479544 ITGA6P23229 1130 aa15.1■□□□□ 0.01
USP42-206ENST00000479544 PEX19P40855 299 aa15.1■□□□□ 0.01
USP42-206ENST00000479544 PDCLQ13371 301 aa15.1■□□□□ 0.01
USP42-206ENST00000479544 KIAA0753Q2KHM9 967 aa15.1■□□□□ 0.01
USP42-206ENST00000479544 PDE6BP35913 854 aa15.1■□□□□ 0.01
USP42-206ENST00000479544 DCAF5Q96JK2 942 aa15.1■□□□□ 0.01
USP42-206ENST00000479544 TBC1D7Q9P0N9 293 aa15.1■□□□□ 0.01
USP42-206ENST00000479544 TMEM110-MUSTN1A8MSY1 372 aa15.09■□□□□ 0.01
USP42-206ENST00000479544 TRAF5O00463 557 aa15.09■□□□□ 0.01
USP42-206ENST00000479544 CEP104O60308 925 aa15.09■□□□□ 0.01
USP42-206ENST00000479544 NEBLO76041 1014 aa15.09■□□□□ 0.01
USP42-206ENST00000479544 PRR29P0C7W0 189 aa15.09■□□□□ 0.01
USP42-206ENST00000479544 KIF5BP33176 963 aa15.09■□□□□ 0.01
USP42-206ENST00000479544 MAGEA9P43362 315 aa15.09■□□□□ 0.01
USP42-206ENST00000479544 ST3GAL1Q11201 340 aa15.09■□□□□ 0.01
USP42-206ENST00000479544 FCHSD1Q86WN1 690 aa15.09■□□□□ 0.01
USP42-206ENST00000479544 ARFGAP2Q8N6H7 521 aa15.09■□□□□ 0.01
USP42-206ENST00000479544 DDX17Q92841 729 aaKnown RBP15.09■□□□□ 0.01
USP42-206ENST00000479544 TBC1D31Q96DN5 1066 aa15.09■□□□□ 0.01
USP42-206ENST00000479544 MRPL44Q9H9J2 332 aaKnown RBP15.09■□□□□ 0.01
USP42-206ENST00000479544 IRS4O14654 1257 aaPredicted RBP15.09■□□□□ 0.01
USP42-206ENST00000479544 PLBD2Q8NHP8 589 aa15.09■□□□□ 0.01
USP42-206ENST00000479544 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.09■□□□□ 0.01
USP42-206ENST00000479544 PARP3Q9Y6F1 533 aa15.09■□□□□ 0.01
USP42-206ENST00000479544 KDRP35968 1356 aa15.09■□□□□ 0.01
USP42-206ENST00000479544 IGKV5-2P06315 115 aa15.09■□□□□ 0.01
USP42-206ENST00000479544 COPB1P53618 953 aaKnown RBP15.09■□□□□ 0.01
USP42-206ENST00000479544 PTGDRQ13258 359 aa15.09■□□□□ 0.01
USP42-206ENST00000479544 TUBB2AQ13885 445 aa15.09■□□□□ 0.01
USP42-206ENST00000479544 TUBB2BQ9BVA1 445 aa15.09■□□□□ 0.01
USP42-206ENST00000479544 EFCC1Q9HA90 598 aa15.09■□□□□ 0.01
USP42-206ENST00000479544 USP6P35125 1406 aa15.09■□□□□ 0.01
USP42-206ENST00000479544 GUCY2DQ02846 1103 aa15.09■□□□□ 0.01
USP42-206ENST00000479544 TMEM266Q2M3C6 531 aa15.09■□□□□ 0.01
USP42-206ENST00000479544 ADAT2Q7Z6V5 191 aaKnown RBP15.09■□□□□ 0.01
USP42-206ENST00000479544 SDR42E1Q8WUS8 393 aa15.09■□□□□ 0.01
USP42-206ENST00000479544 ZNF446Q9NWS9 450 aa15.09■□□□□ 0.01
USP42-206ENST00000479544 DCCP43146 1447 aa15.08■□□□□ 0.01
USP42-206ENST00000479544 ECM2O94769 699 aaPredicted RBP15.08■□□□□ 0
USP42-206ENST00000479544 TBC1D8O95759 1140 aa15.08■□□□□ 0
USP42-206ENST00000479544 MPHOSPH10O00566 681 aaKnown RBP15.08■□□□□ 0
USP42-206ENST00000479544 NAPAP54920 295 aa15.08■□□□□ 0
USP42-206ENST00000479544 HAUS4Q9H6D7 363 aa15.08■□□□□ 0
USP42-206ENST00000479544 SLC52A2Q9HAB3 445 aa15.08■□□□□ 0
USP42-206ENST00000479544 MRFAP1Q9Y605 127 aa15.08■□□□□ 0
USP42-206ENST00000479544 A0A087WUV0 522 aaPredicted RBP15.08■□□□□ 0
USP42-206ENST00000479544 B4DLN1 442 aa15.08■□□□□ 0
USP42-206ENST00000479544 PPFIA4O75335 1185 aa15.08■□□□□ 0
USP42-206ENST00000479544 KIF4AO95239 1232 aa15.08■□□□□ 0
USP42-206ENST00000479544 SHC4Q6S5L8 630 aa15.08■□□□□ 0
USP42-206ENST00000479544 CCDC125Q86Z20 511 aa15.08■□□□□ 0
USP42-206ENST00000479544 ZNF654Q8IZM8 581 aa15.08■□□□□ 0
USP42-206ENST00000479544 GGCXP38435 758 aa15.07■□□□□ 0
USP42-206ENST00000479544 KRT71Q3SY84 523 aa15.07■□□□□ 0
USP42-206ENST00000479544 LCMT1Q9UIC8 334 aa15.07■□□□□ 0
USP42-206ENST00000479544 ADGRG1Q9Y653 693 aa15.07■□□□□ 0
USP42-206ENST00000479544 CPSF1Q10570 1443 aaKnown RBP15.07■□□□□ 0
USP42-206ENST00000479544 SNAP23O00161 211 aa15.07■□□□□ 0
USP42-206ENST00000479544 H2AFXP16104 143 aaPredicted RBP15.07■□□□□ 0
USP42-206ENST00000479544 FAM47AQ5JRC9 791 aa15.07■□□□□ 0
USP42-206ENST00000479544 IFT20Q8IY31 132 aa15.07■□□□□ 0
USP42-206ENST00000479544 ENOX1Q8TC92 643 aaKnown RBP15.07■□□□□ 0
USP42-206ENST00000479544 KCNK9Q9NPC2 374 aa15.07■□□□□ 0
USP42-206ENST00000479544 TFR2Q9UP52 801 aa15.07■□□□□ 0
USP42-206ENST00000479544 TADA2BQ86TJ2 420 aa15.07■□□□□ 0
USP42-206ENST00000479544 EFCAB13Q8IY85 973 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms