RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 KLHL14Q9P2G3 628 aa9.76□□□□□ -0.85
SYNE1-224ENST00000478916 CTNND2Q9UQB3 1225 aa9.76□□□□□ -0.85
SYNE1-224ENST00000478916 NPC1L1Q9UHC9 1359 aa9.76□□□□□ -0.85
SYNE1-224ENST00000478916 BRD3Q15059 726 aa9.76□□□□□ -0.85
SYNE1-224ENST00000478916 PDCD2Q16342 344 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-224ENST00000478916 RBSNQ9H1K0 784 aa9.76□□□□□ -0.85
SYNE1-224ENST00000478916 BAG2O95816 211 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 KRT15P19012 456 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 ADCY7P51828 1080 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 CUL4BQ13620 913 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 CFAP221Q4G0U5 840 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 GOLGA5Q8TBA6 731 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 SEPT8Q92599 483 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 ZC4H2Q9NQZ6 224 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 B4E1Z4 1266 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 CHMP2AO43633 222 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 AKNAD1Q5T1N1 836 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 SMCR8Q8TEV9 937 aaPredicted RBP9.75□□□□□ -0.85
SYNE1-224ENST00000478916 CACYBPQ9HB71 228 aaKnown RBP9.75□□□□□ -0.85
SYNE1-224ENST00000478916 TAF5LO75529 589 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 TIMM10P62072 90 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 BIRC3Q13489 604 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 PLEKHM2Q8IWE5 1019 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 ATP2A3Q93084 1043 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 ASIC3Q9UHC3 531 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 RNASE9P60153 205 aaKnown RBP9.75□□□□□ -0.85
SYNE1-224ENST00000478916 KIF22Q14807 665 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 ZYXQ15942 572 aaKnown RBP9.75□□□□□ -0.85
SYNE1-224ENST00000478916 LRRC43Q8N309 656 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 TRIM6Q9C030 488 aaPredicted RBP9.75□□□□□ -0.85
SYNE1-224ENST00000478916 BCS1LQ9Y276 419 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 GPAA1O43292 621 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 CCNT1O60563 726 aaKnown RBP9.75□□□□□ -0.85
SYNE1-224ENST00000478916 KRT5P13647 590 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 LGR6Q9HBX8 967 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 PLEKHG3A1L390 1219 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 ARHGAP42A6NI28 874 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 STX10O60499 249 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 MYCLP12524 364 aaPredicted RBP9.75□□□□□ -0.85
SYNE1-224ENST00000478916 STX2P32856 288 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 GNGT1P63211 74 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 TEKT1Q969V4 418 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 RAB17Q9H0T7 212 aa9.75□□□□□ -0.85
SYNE1-224ENST00000478916 CALUO43852 315 aaPredicted RBP9.74□□□□□ -0.85
SYNE1-224ENST00000478916 LPXNO60711 386 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 DNM2P50570 870 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 TBC1D8BQ0IIM8 1120 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 KRT71Q3SY84 523 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 LIN9Q5TKA1 542 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 SND1Q7KZF4 910 aaKnown RBP eCLIP9.74□□□□□ -0.85
SYNE1-224ENST00000478916 SYCE1Q8N0S2 351 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 PPP4R1Q8TF05 950 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 DDX17Q92841 729 aaKnown RBP9.74□□□□□ -0.85
SYNE1-224ENST00000478916 RPGRIP1Q96KN7 1286 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 VWA3AA6NCI4 1184 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 CCDC169A6NNP5 214 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 WDR46O15213 610 aaKnown RBP9.74□□□□□ -0.85
SYNE1-224ENST00000478916 RPS6KB1P23443 525 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 LRRC23Q53EV4 343 aaPredicted RBP9.74□□□□□ -0.85
SYNE1-224ENST00000478916 SPC25Q9HBM1 224 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 ANGEL1Q9UNK9 670 aaKnown RBP9.74□□□□□ -0.85
SYNE1-224ENST00000478916 MX2P20592 715 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 DCAF15Q66K64 600 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 CNNM4Q6P4Q7 775 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 ZNF594Q96JF6 807 aaPredicted RBP9.74□□□□□ -0.85
SYNE1-224ENST00000478916 DBNDD2Q9BQY9 259 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 TRIM31Q9BZY9 425 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 ARPP21Q9UBL0 812 aaPredicted RBP9.74□□□□□ -0.85
SYNE1-224ENST00000478916 ARHGEF35A5YM69 484 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 CHL1O00533 1208 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 RGS16O15492 202 aaPredicted RBP9.74□□□□□ -0.85
SYNE1-224ENST00000478916 TMTC1Q8IUR5 882 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 P3H4Q92791 437 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 AFG3L2Q9Y4W6 797 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 ZNF75DP51815 510 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 CTSWP56202 376 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 PRKG1Q13976 671 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 KRT25Q7Z3Z0 450 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 USP19O94966 1318 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 KRT3P12035 628 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 ZNF174Q15697 407 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 G2E3Q7L622 706 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 MGARPQ8TDB4 240 aa9.74□□□□□ -0.85
SYNE1-224ENST00000478916 HARSP12081 509 aaKnown RBP9.73□□□□□ -0.85
SYNE1-224ENST00000478916 RPS8P62241 208 aaKnown RBP9.73□□□□□ -0.85
SYNE1-224ENST00000478916 PABPC4Q13310 644 aaKnown RBP eCLIP9.73□□□□□ -0.85
SYNE1-224ENST00000478916 C2CD5Q86YS7 1000 aa9.73□□□□□ -0.85
SYNE1-224ENST00000478916 CNKSR1Q969H4 720 aa9.73□□□□□ -0.85
SYNE1-224ENST00000478916 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.73□□□□□ -0.85
SYNE1-224ENST00000478916 PZPP20742 1482 aa9.73□□□□□ -0.85
SYNE1-224ENST00000478916 ARHGAP6O43182 974 aa9.73□□□□□ -0.85
SYNE1-224ENST00000478916 ATP2B4P23634 1241 aa9.73□□□□□ -0.85
SYNE1-224ENST00000478916 TCP10Q12799 353 aa9.73□□□□□ -0.85
SYNE1-224ENST00000478916 CCDC93Q567U6 631 aa9.73□□□□□ -0.85
SYNE1-224ENST00000478916 ZNF710Q8N1W2 664 aa9.73□□□□□ -0.85
SYNE1-224ENST00000478916 PDCD7Q8N8D1 485 aaKnown RBP9.73□□□□□ -0.85
SYNE1-224ENST00000478916 LLPHQ9BRT6 129 aaKnown RBP9.73□□□□□ -0.85
SYNE1-224ENST00000478916 CAPS2Q9BXY5 557 aa9.73□□□□□ -0.85
SYNE1-224ENST00000478916 SLC9C1Q4G0N8 1177 aa9.73□□□□□ -0.85
SYNE1-224ENST00000478916 VPS16Q9H269 839 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms