RNA–Protein interactions for RNA: ENST00000478279.5

APTX-222, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 684 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-222	ENST00000478279	GPR108	Q9NPR9	543 aa		12.95	□□□□□ -0.34
APTX-222	ENST00000478279	SLC5A4	Q9NY91	659 aa		12.95	□□□□□ -0.34
APTX-222	ENST00000478279	HOXC10	Q9NYD6	342 aa		12.95	□□□□□ -0.34
APTX-222	ENST00000478279	SERPINB13	Q9UIV8	391 aa		12.95	□□□□□ -0.34
APTX-222	ENST00000478279	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	12.94	□□□□□ -0.34
APTX-222	ENST00000478279	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	12.94	□□□□□ -0.34
APTX-222	ENST00000478279	KIAA0355	O15063	1070 aa		12.94	□□□□□ -0.34
APTX-222	ENST00000478279	COBL	O75128	1261 aa		12.94	□□□□□ -0.34
APTX-222	ENST00000478279	CLTB	P09497	229 aa		12.94	□□□□□ -0.34
APTX-222	ENST00000478279	ERCC3	P19447	782 aa		12.94	□□□□□ -0.34
APTX-222	ENST00000478279	CYP7A1	P22680	504 aa		12.94	□□□□□ -0.34
APTX-222	ENST00000478279	FAM47A	Q5JRC9	791 aa		12.94	□□□□□ -0.34
APTX-222	ENST00000478279	PRAMEF19	Q5SWL8	479 aa		12.94	□□□□□ -0.34
APTX-222	ENST00000478279	TTC6	Q86TZ1	520 aa		12.94	□□□□□ -0.34
APTX-222	ENST00000478279	CERS3	Q8IU89	383 aa		12.94	□□□□□ -0.34
APTX-222	ENST00000478279	CDCA7L	Q96GN5	454 aa		12.94	□□□□□ -0.34
APTX-222	ENST00000478279	ZNF512B	Q96KM6	892 aa	Predicted RBP	12.94	□□□□□ -0.34
APTX-222	ENST00000478279	SPATC1L	Q9H0A9	340 aa		12.94	□□□□□ -0.34
APTX-222	ENST00000478279	PHF24	Q9UPV7	400 aa		12.94	□□□□□ -0.34
APTX-222	ENST00000478279	CHD9	Q3L8U1	2897 aa		12.94	□□□□□ -0.34
APTX-222	ENST00000478279	PNMA6E	A0A0J9YXQ4	647 aa		12.93	□□□□□ -0.34
APTX-222	ENST00000478279	GNAI2	P04899	355 aa		12.93	□□□□□ -0.34
APTX-222	ENST00000478279	RAG1	P15918	1043 aa		12.93	□□□□□ -0.34
APTX-222	ENST00000478279	DNAJB2	P25686	324 aa		12.93	□□□□□ -0.34
APTX-222	ENST00000478279	ZAP70	P43403	619 aa		12.93	□□□□□ -0.34
APTX-222	ENST00000478279	USP5	P45974	858 aa		12.93	□□□□□ -0.34
APTX-222	ENST00000478279	TRMT2A	Q8IZ69	625 aa	Known RBP	12.93	□□□□□ -0.34
APTX-222	ENST00000478279	ABRA	Q8N0Z2	381 aa		12.93	□□□□□ -0.34
APTX-222	ENST00000478279	DBNDD2	Q9BQY9	259 aa		12.93	□□□□□ -0.34
APTX-222	ENST00000478279	MROH8	Q9H579	483 aa		12.93	□□□□□ -0.34
APTX-222	ENST00000478279	PIH1D3	Q9NQM4	214 aa	Known RBP	12.93	□□□□□ -0.34
APTX-222	ENST00000478279	RARB	P10826	455 aa		12.92	□□□□□ -0.34
APTX-222	ENST00000478279	GUCY1A2	P33402	732 aa		12.92	□□□□□ -0.34
APTX-222	ENST00000478279	SHMT1	P34896	483 aa		12.92	□□□□□ -0.34
APTX-222	ENST00000478279	FPGS	Q05932	587 aa		12.92	□□□□□ -0.34
APTX-222	ENST00000478279	TNNI3K	Q59H18	835 aa		12.92	□□□□□ -0.34
APTX-222	ENST00000478279	MB21D1	Q8N884	522 aa		12.92	□□□□□ -0.34
APTX-222	ENST00000478279	MIGA1	Q8NAN2	632 aa		12.92	□□□□□ -0.34
APTX-222	ENST00000478279	ARHGAP45	Q92619	1136 aa		12.92	□□□□□ -0.34
APTX-222	ENST00000478279	MAML3	Q96JK9	1138 aa		12.92	□□□□□ -0.34
APTX-222	ENST00000478279	ZNF576	Q9H609	170 aa		12.92	□□□□□ -0.34
APTX-222	ENST00000478279	XPNPEP3	Q9NQH7	507 aa		12.92	□□□□□ -0.34
APTX-222	ENST00000478279	TMEM39A	Q9NV64	488 aa		12.92	□□□□□ -0.34
APTX-222	ENST00000478279	NRBP1	Q9UHY1	535 aa		12.92	□□□□□ -0.34
APTX-222	ENST00000478279	FPGT-TNNI3K	V9GXZ4	949 aa		12.92	□□□□□ -0.34
APTX-222	ENST00000478279	ZNFX1	Q9P2E3	1918 aa	Known RBP	12.92	□□□□□ -0.34
APTX-222	ENST00000478279	PQBP1	O60828	265 aa	Known RBP	12.91	□□□□□ -0.34
APTX-222	ENST00000478279	DSG3	P32926	999 aa		12.91	□□□□□ -0.34
APTX-222	ENST00000478279	PLCD1	P51178	756 aa		12.91	□□□□□ -0.34
APTX-222	ENST00000478279	SEPT2	Q15019	361 aa		12.91	□□□□□ -0.34
APTX-222	ENST00000478279	RNF180	Q86T96	592 aa		12.91	□□□□□ -0.34
APTX-222	ENST00000478279	NCAPG2	Q86XI2	1143 aa		12.91	□□□□□ -0.34
APTX-222	ENST00000478279	ATXN2L	Q8WWM7	1075 aa	Known RBP	12.91	□□□□□ -0.34
APTX-222	ENST00000478279	TIFA	Q96CG3	184 aa		12.91	□□□□□ -0.34
APTX-222	ENST00000478279	TANGO6	Q9C0B7	1094 aa		12.91	□□□□□ -0.34
APTX-222	ENST00000478279	RAPGEFL1	Q9UHV5	662 aa		12.91	□□□□□ -0.34
APTX-222	ENST00000478279		A0A1W2PQ45	241 aa	Predicted RBP	12.9	□□□□□ -0.34
APTX-222	ENST00000478279		A0A1W2PQY0	241 aa		12.9	□□□□□ -0.34
APTX-222	ENST00000478279		A0A1W2PRG0	241 aa		12.9	□□□□□ -0.34
APTX-222	ENST00000478279	IDH1	O75874	414 aa	Known RBP	12.9	□□□□□ -0.34
APTX-222	ENST00000478279	FCER1A	P12319	257 aa		12.9	□□□□□ -0.34
APTX-222	ENST00000478279	PLS1	Q14651	629 aa		12.9	□□□□□ -0.34
APTX-222	ENST00000478279	TOX2	Q96NM4	488 aa		12.9	□□□□□ -0.34
APTX-222	ENST00000478279	GAS2L1	Q99501	681 aa	Predicted RBP	12.9	□□□□□ -0.34
APTX-222	ENST00000478279		A0A0G2JMZ2	1700 aa		12.89	□□□□□ -0.35
APTX-222	ENST00000478279	PGK1	P00558	417 aa		12.89	□□□□□ -0.35
APTX-222	ENST00000478279	RARS	P54136	660 aa	Known RBP	12.89	□□□□□ -0.35
APTX-222	ENST00000478279	GABPA	Q06546	454 aa		12.89	□□□□□ -0.35
APTX-222	ENST00000478279	FAAP100	Q0VG06	881 aa		12.89	□□□□□ -0.35
APTX-222	ENST00000478279	AKNAD1	Q5T1N1	836 aa		12.89	□□□□□ -0.35
APTX-222	ENST00000478279	TMED8	Q6PL24	325 aa	Predicted RBP	12.89	□□□□□ -0.35
APTX-222	ENST00000478279	ANKRD33	Q7Z3H0	272 aa		12.89	□□□□□ -0.35
APTX-222	ENST00000478279	MAGEB6	Q8N7X4	407 aa		12.89	□□□□□ -0.35
APTX-222	ENST00000478279	SLC44A5	Q8NCS7	719 aa		12.89	□□□□□ -0.35
APTX-222	ENST00000478279	PPM1E	Q8WY54	764 aa		12.89	□□□□□ -0.35
APTX-222	ENST00000478279	DCDC2C	A8MYV0	355 aa		12.88	□□□□□ -0.35
APTX-222	ENST00000478279	MPHOSPH10	O00566	681 aa	Known RBP	12.88	□□□□□ -0.35
APTX-222	ENST00000478279	SLC25A27	O95847	323 aa		12.88	□□□□□ -0.35
APTX-222	ENST00000478279	TIMP1	P01033	207 aa		12.88	□□□□□ -0.35
APTX-222	ENST00000478279	POLR3D	P05423	398 aa	Predicted RBP	12.88	□□□□□ -0.35
APTX-222	ENST00000478279	PLA2G5	P39877	138 aa		12.88	□□□□□ -0.35
APTX-222	ENST00000478279	OS9	Q13438	667 aa	Predicted RBP	12.88	□□□□□ -0.35
APTX-222	ENST00000478279	ATG4C	Q96DT6	458 aa		12.88	□□□□□ -0.35
APTX-222	ENST00000478279	ASB2	Q96Q27	587 aa		12.88	□□□□□ -0.35
APTX-222	ENST00000478279	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	12.88	□□□□□ -0.35	3e-6	■■□□□ 12.8
APTX-222	ENST00000478279	TINF2	Q9BSI4	451 aa		12.88	□□□□□ -0.35
APTX-222	ENST00000478279	TSEN34	Q9BSV6	310 aa	Known RBP	12.88	□□□□□ -0.35
APTX-222	ENST00000478279	THEG	Q9P2T0	379 aa		12.88	□□□□□ -0.35
APTX-222	ENST00000478279	CHD7	Q9P2D1	2997 aa		12.87	□□□□□ -0.35
APTX-222	ENST00000478279	ROBO3	Q96MS0	1386 aa		12.87	□□□□□ -0.35
APTX-222	ENST00000478279	ADAMTS4	O75173	837 aa		12.87	□□□□□ -0.35
APTX-222	ENST00000478279	FLOT1	O75955	427 aa		12.87	□□□□□ -0.35
APTX-222	ENST00000478279	TAL1	P17542	331 aa	Predicted RBP	12.87	□□□□□ -0.35
APTX-222	ENST00000478279	MRPS5	P82675	430 aa	Known RBP	12.87	□□□□□ -0.35
APTX-222	ENST00000478279	MAP3K12	Q12852	859 aa		12.87	□□□□□ -0.35
APTX-222	ENST00000478279	POLA2	Q14181	598 aa		12.87	□□□□□ -0.35
APTX-222	ENST00000478279	KIAA1755	Q5JYT7	1200 aa		12.87	□□□□□ -0.35
APTX-222	ENST00000478279	MFSD5	Q6N075	450 aa		12.87	□□□□□ -0.35
APTX-222	ENST00000478279	ADAMTS19	Q8TE59	1207 aa		12.87	□□□□□ -0.35
APTX-222	ENST00000478279	STARD7	Q9NQZ5	370 aa		12.87	□□□□□ -0.35

Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms