RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 CCDC34Q96HJ3 373 aa13.98□□□□□ -0.17
PTPRF-212ENST00000477970 RBM17Q96I25 401 aaKnown RBP13.98□□□□□ -0.17
PTPRF-212ENST00000477970 CABP5Q9NP86 173 aa13.98□□□□□ -0.17
PTPRF-212ENST00000477970 ANKIB1Q9P2G1 1089 aa13.98□□□□□ -0.17
PTPRF-212ENST00000477970 V9GY48 417 aaPredicted RBP13.98□□□□□ -0.17
PTPRF-212ENST00000477970 A0A087WWV3 80 aa13.98□□□□□ -0.17
PTPRF-212ENST00000477970 BBOX1O75936 387 aa13.98□□□□□ -0.17
PTPRF-212ENST00000477970 SCG2P13521 617 aa13.98□□□□□ -0.17
PTPRF-212ENST00000477970 CCZ1BP86790 482 aa13.98□□□□□ -0.17
PTPRF-212ENST00000477970 CCZ1P86791 482 aaPredicted RBP13.98□□□□□ -0.17
PTPRF-212ENST00000477970 MLKLQ8NB16 471 aa13.98□□□□□ -0.17
PTPRF-212ENST00000477970 MAP7D2Q96T17 732 aa13.98□□□□□ -0.17
PTPRF-212ENST00000477970 PYM1Q9BRP8 204 aaKnown RBP13.98□□□□□ -0.17
PTPRF-212ENST00000477970 VPS54Q9P1Q0 977 aa13.98□□□□□ -0.17
PTPRF-212ENST00000477970 PRDM1O75626 825 aa13.97□□□□□ -0.17
PTPRF-212ENST00000477970 GNAQP50148 359 aa13.97□□□□□ -0.17
PTPRF-212ENST00000477970 MSL1Q68DK7 614 aa13.97□□□□□ -0.17
PTPRF-212ENST00000477970 MTERF4Q7Z6M4 381 aaKnown RBP13.97□□□□□ -0.17
PTPRF-212ENST00000477970 FOXP4Q8IVH2 680 aaPredicted RBP13.97□□□□□ -0.17
PTPRF-212ENST00000477970 AMOTL1Q8IY63 956 aa13.97□□□□□ -0.17
PTPRF-212ENST00000477970 CRAMP1Q96RY5 1269 aa13.97□□□□□ -0.17
PTPRF-212ENST00000477970 RTFDC1Q9BY42 306 aaPredicted RBP13.97□□□□□ -0.17
PTPRF-212ENST00000477970 MORC3Q14149 939 aa13.97□□□□□ -0.17
PTPRF-212ENST00000477970 GRM4Q14833 912 aa13.97□□□□□ -0.17
PTPRF-212ENST00000477970 SH3RF1Q7Z6J0 888 aa13.97□□□□□ -0.17
PTPRF-212ENST00000477970 RPGRQ92834 1020 aaKnown RBP13.97□□□□□ -0.17
PTPRF-212ENST00000477970 MCM9Q9NXL9 1143 aa13.97□□□□□ -0.17
PTPRF-212ENST00000477970 PCDHA5Q9Y5H7 936 aa13.97□□□□□ -0.17
PTPRF-212ENST00000477970 TSPY2A6NKD2 308 aa13.97□□□□□ -0.17
PTPRF-212ENST00000477970 ATP2C1P98194 919 aaPredicted RBP13.97□□□□□ -0.17
PTPRF-212ENST00000477970 ZNF287Q9HBT7 754 aa13.97□□□□□ -0.17
PTPRF-212ENST00000477970 COL11A2P13942 1736 aaPredicted RBP13.96□□□□□ -0.17
PTPRF-212ENST00000477970 GPR75-ASB3A0A0A6YYF3 556 aa13.96□□□□□ -0.17
PTPRF-212ENST00000477970 POLRMTO00411 1230 aaKnown RBP13.96□□□□□ -0.17
PTPRF-212ENST00000477970 MMP10P09238 476 aa13.96□□□□□ -0.17
PTPRF-212ENST00000477970 CYP2D6P10635 497 aa13.96□□□□□ -0.17
PTPRF-212ENST00000477970 PLCG2P16885 1265 aa13.96□□□□□ -0.17
PTPRF-212ENST00000477970 CALML3P27482 149 aa13.96□□□□□ -0.17
PTPRF-212ENST00000477970 GPSM2P81274 684 aa13.96□□□□□ -0.17
PTPRF-212ENST00000477970 GALNT17Q6IS24 598 aa13.96□□□□□ -0.17
PTPRF-212ENST00000477970 DAGLBQ8NCG7 672 aa13.96□□□□□ -0.17
PTPRF-212ENST00000477970 XPO4Q9C0E2 1151 aaKnown RBP13.96□□□□□ -0.17
PTPRF-212ENST00000477970 BIN1O00499 593 aa13.96□□□□□ -0.18
PTPRF-212ENST00000477970 FANCCQ00597 558 aa13.96□□□□□ -0.18
PTPRF-212ENST00000477970 CCDC82Q8N4S0 544 aa13.96□□□□□ -0.18
PTPRF-212ENST00000477970 SH3RF3Q8TEJ3 882 aaPredicted RBP13.96□□□□□ -0.18
PTPRF-212ENST00000477970 LZTS2Q9BRK4 669 aa13.96□□□□□ -0.18
PTPRF-212ENST00000477970 CSRNP2Q9H175 543 aa13.96□□□□□ -0.18
PTPRF-212ENST00000477970 MAN1B1Q9UKM7 699 aa13.96□□□□□ -0.18
PTPRF-212ENST00000477970 GAKO14976 1311 aa13.96□□□□□ -0.18
PTPRF-212ENST00000477970 NPHP1O15259 732 aa13.95□□□□□ -0.18
PTPRF-212ENST00000477970 NOVP48745 357 aa13.95□□□□□ -0.18
PTPRF-212ENST00000477970 GRIN1Q05586 938 aa13.95□□□□□ -0.18
PTPRF-212ENST00000477970 SLF2Q8IX21 1173 aa13.95□□□□□ -0.18
PTPRF-212ENST00000477970 TBC1D22AQ8WUA7 517 aa13.95□□□□□ -0.18
PTPRF-212ENST00000477970 KAT14Q9H8E8 782 aa13.95□□□□□ -0.18
PTPRF-212ENST00000477970 CD209Q9NNX6 404 aa13.95□□□□□ -0.18
PTPRF-212ENST00000477970 IL17RBQ9NRM6 502 aa13.95□□□□□ -0.18
PTPRF-212ENST00000477970 IFNKQ9P0W0 207 aa13.95□□□□□ -0.18
PTPRF-212ENST00000477970 FAM205AQ6ZU69 1335 aa13.95□□□□□ -0.18
PTPRF-212ENST00000477970 MYH1P12882 1939 aa13.95□□□□□ -0.18
PTPRF-212ENST00000477970 USP17L8P0C7I0 530 aa13.95□□□□□ -0.18
PTPRF-212ENST00000477970 USP5P45974 858 aa13.95□□□□□ -0.18
PTPRF-212ENST00000477970 FAM47AQ5JRC9 791 aa13.95□□□□□ -0.18
PTPRF-212ENST00000477970 ENOX1Q8TC92 643 aaKnown RBP13.95□□□□□ -0.18
PTPRF-212ENST00000477970 PAXBP1Q9Y5B6 917 aa13.95□□□□□ -0.18
PTPRF-212ENST00000477970 PARP3Q9Y6F1 533 aa13.95□□□□□ -0.18
PTPRF-212ENST00000477970 POLR2DO15514 142 aaKnown RBP13.95□□□□□ -0.18
PTPRF-212ENST00000477970 SERPINB2P05120 415 aa13.95□□□□□ -0.18
PTPRF-212ENST00000477970 SMARCA1P28370 1054 aa13.95□□□□□ -0.18
PTPRF-212ENST00000477970 ERCC5P28715 1186 aaPredicted RBP13.95□□□□□ -0.18
PTPRF-212ENST00000477970 TGFB2P61812 414 aa13.95□□□□□ -0.18
PTPRF-212ENST00000477970 DDR1Q08345 913 aa13.95□□□□□ -0.18
PTPRF-212ENST00000477970 TTC38Q5R3I4 469 aa13.95□□□□□ -0.18
PTPRF-212ENST00000477970 ARL6IP4Q66PJ3 421 aaKnown RBP13.95□□□□□ -0.18
PTPRF-212ENST00000477970 CCDC24Q8N4L8 307 aa13.95□□□□□ -0.18
PTPRF-212ENST00000477970 SMARCE1Q969G3 411 aa13.95□□□□□ -0.18
PTPRF-212ENST00000477970 SERTAD1Q9UHV2 236 aa13.95□□□□□ -0.18
PTPRF-212ENST00000477970 GGA1Q9UJY5 639 aa13.95□□□□□ -0.18
PTPRF-212ENST00000477970 SNED1Q8TER0 1413 aa13.94□□□□□ -0.18
PTPRF-212ENST00000477970 SLFN14P0C7P3 912 aa13.94□□□□□ -0.18
PTPRF-212ENST00000477970 BMP6P22004 513 aa13.94□□□□□ -0.18
PTPRF-212ENST00000477970 EVX2Q03828 476 aa13.94□□□□□ -0.18
PTPRF-212ENST00000477970 EARS2Q5JPH6 523 aaKnown RBP13.94□□□□□ -0.18
PTPRF-212ENST00000477970 SUGT1Q9Y2Z0 365 aa13.94□□□□□ -0.18
PTPRF-212ENST00000477970 PLIN4Q96Q06 1357 aa13.94□□□□□ -0.18
PTPRF-212ENST00000477970 NMT2O60551 498 aa13.94□□□□□ -0.18
PTPRF-212ENST00000477970 SMC2O95347 1197 aa13.94□□□□□ -0.18
PTPRF-212ENST00000477970 TUBB4AP04350 444 aa13.94□□□□□ -0.18
PTPRF-212ENST00000477970 SKILP12757 684 aa13.94□□□□□ -0.18
PTPRF-212ENST00000477970 TFAP4Q01664 338 aa13.94□□□□□ -0.18
PTPRF-212ENST00000477970 SYCP1Q15431 976 aa13.94□□□□□ -0.18
PTPRF-212ENST00000477970 NYAP1Q6ZVC0 841 aa13.94□□□□□ -0.18
PTPRF-212ENST00000477970 C16orf86Q6ZW13 317 aa13.94□□□□□ -0.18
PTPRF-212ENST00000477970 M0R2N6 131 aa13.93□□□□□ -0.18
PTPRF-212ENST00000477970 KIF2AO00139 706 aaPredicted RBP13.93□□□□□ -0.18
PTPRF-212ENST00000477970 CTIFO43310 598 aaKnown RBP13.93□□□□□ -0.18
PTPRF-212ENST00000477970 ZNF18P17022 549 aa13.93□□□□□ -0.18
PTPRF-212ENST00000477970 PNMA1Q8ND90 353 aa13.93□□□□□ -0.18
PTPRF-212ENST00000477970 MAD2L2Q9UI95 211 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms