RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 LRRC47Q8N1G4 583 aaKnown RBP5.64□□□□□ -1.51
VPS13D-207ENST00000476169 XAGE3Q8WTP9 111 aa5.64□□□□□ -1.51
VPS13D-207ENST00000476169 STAG1Q8WVM7 1258 aa5.64□□□□□ -1.51
VPS13D-207ENST00000476169 FEZ1Q99689 392 aa5.64□□□□□ -1.51
VPS13D-207ENST00000476169 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.64□□□□□ -1.51
VPS13D-207ENST00000476169 FAM105AQ9NUU6 356 aa5.64□□□□□ -1.51
VPS13D-207ENST00000476169 MAGEC2Q9UBF1 373 aaPredicted RBP5.64□□□□□ -1.51
VPS13D-207ENST00000476169 PCOLCE2Q9UKZ9 415 aa5.64□□□□□ -1.51
VPS13D-207ENST00000476169 ANKRD34BA5PLL1 514 aa5.63□□□□□ -1.51
VPS13D-207ENST00000476169 F8W735 103 aaPredicted RBP5.63□□□□□ -1.51
VPS13D-207ENST00000476169 GAS2O43903 313 aaKnown RBP5.63□□□□□ -1.51
VPS13D-207ENST00000476169 ASMTLO95671 621 aa5.63□□□□□ -1.51
VPS13D-207ENST00000476169 RAB6AP20340 208 aa5.63□□□□□ -1.51
VPS13D-207ENST00000476169 ZNF143P52747 638 aaPredicted RBP5.63□□□□□ -1.51
VPS13D-207ENST00000476169 TCEA2Q15560 299 aa5.63□□□□□ -1.51
VPS13D-207ENST00000476169 TKFCQ3LXA3 575 aa5.63□□□□□ -1.51
VPS13D-207ENST00000476169 TMEM67Q5HYA8 995 aa5.63□□□□□ -1.51
VPS13D-207ENST00000476169 HEATR6Q6AI08 1181 aaKnown RBP5.63□□□□□ -1.51
VPS13D-207ENST00000476169 ARMCX6Q7L4S7 300 aa5.63□□□□□ -1.51
VPS13D-207ENST00000476169 CCDC144CPQ8IYA2 1237 aa5.63□□□□□ -1.51
VPS13D-207ENST00000476169 TMEM130Q8N3G9 435 aa5.63□□□□□ -1.51
VPS13D-207ENST00000476169 SMARCC1Q92922 1105 aaPredicted RBP5.63□□□□□ -1.51
VPS13D-207ENST00000476169 SLC26A8Q96RN1 970 aa5.63□□□□□ -1.51
VPS13D-207ENST00000476169 NOP53Q9NZM5 478 aaKnown RBP5.63□□□□□ -1.51
VPS13D-207ENST00000476169 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.62□□□□□ -1.51
VPS13D-207ENST00000476169 C9IYK1 514 aa5.62□□□□□ -1.51
VPS13D-207ENST00000476169 SART1O43290 800 aaKnown RBP5.62□□□□□ -1.51
VPS13D-207ENST00000476169 ADCY3O60266 1144 aa5.62□□□□□ -1.51
VPS13D-207ENST00000476169 LRIG2O94898 1065 aa5.62□□□□□ -1.51
VPS13D-207ENST00000476169 ARHGEF15O94989 841 aa5.62□□□□□ -1.51
VPS13D-207ENST00000476169 EPHX1P07099 455 aa5.62□□□□□ -1.51
VPS13D-207ENST00000476169 PREPP48147 710 aa5.62□□□□□ -1.51
VPS13D-207ENST00000476169 USP11P51784 963 aa5.62□□□□□ -1.51
VPS13D-207ENST00000476169 SHISA2Q6UWI4 295 aa5.62□□□□□ -1.51
VPS13D-207ENST00000476169 SYNPOQ8N3V7 929 aa5.62□□□□□ -1.51
VPS13D-207ENST00000476169 ZBTB38Q8NAP3 1195 aaPredicted RBP5.62□□□□□ -1.51
VPS13D-207ENST00000476169 PPP1R14AQ96A00 147 aa5.62□□□□□ -1.51
VPS13D-207ENST00000476169 SGSM3Q96HU1 749 aa5.62□□□□□ -1.51
VPS13D-207ENST00000476169 ZNF512BQ96KM6 892 aaPredicted RBP5.62□□□□□ -1.51
VPS13D-207ENST00000476169 APBA2Q99767 749 aa5.62□□□□□ -1.51
VPS13D-207ENST00000476169 HAUS7Q99871 368 aa5.62□□□□□ -1.51
VPS13D-207ENST00000476169 CEP41Q9BYV8 373 aa5.62□□□□□ -1.51
VPS13D-207ENST00000476169 MKRN2Q9H000 416 aaKnown RBP5.62□□□□□ -1.51
VPS13D-207ENST00000476169 AKTIPQ9H8T0 292 aa5.62□□□□□ -1.51
VPS13D-207ENST00000476169 HOMER2Q9NSB8 354 aa5.62□□□□□ -1.51
VPS13D-207ENST00000476169 TYW1Q9NV66 732 aaKnown RBP5.62□□□□□ -1.51
VPS13D-207ENST00000476169 LRP2BPQ9P2M1 347 aa5.62□□□□□ -1.51
VPS13D-207ENST00000476169 TCEAL9Q9UHQ7 104 aa5.62□□□□□ -1.51
VPS13D-207ENST00000476169 USP21Q9UK80 565 aa5.62□□□□□ -1.51
VPS13D-207ENST00000476169 ALX3O95076 343 aa5.61□□□□□ -1.51
VPS13D-207ENST00000476169 GLB1P16278 677 aa5.61□□□□□ -1.51
VPS13D-207ENST00000476169 MASP1P48740 699 aa5.61□□□□□ -1.51
VPS13D-207ENST00000476169 GRIK4Q16099 956 aa5.61□□□□□ -1.51
VPS13D-207ENST00000476169 LONRF2Q1L5Z9 754 aa5.61□□□□□ -1.51
VPS13D-207ENST00000476169 ZC3H12BQ5HYM0 836 aaKnown RBP5.61□□□□□ -1.51
VPS13D-207ENST00000476169 AXDND1Q5T1B0 1012 aaPredicted RBP5.61□□□□□ -1.51
VPS13D-207ENST00000476169 DCAF15Q66K64 600 aa5.61□□□□□ -1.51
VPS13D-207ENST00000476169 PODNQ7Z5L7 613 aa5.61□□□□□ -1.51
VPS13D-207ENST00000476169 MFSD2AQ8NA29 543 aa5.61□□□□□ -1.51
VPS13D-207ENST00000476169 MIPEPQ99797 713 aa5.61□□□□□ -1.51
VPS13D-207ENST00000476169 GBP3Q9H0R5 595 aa5.61□□□□□ -1.51
VPS13D-207ENST00000476169 SUSD2Q9UGT4 822 aa5.61□□□□□ -1.51
VPS13D-207ENST00000476169 DAGLAQ9Y4D2 1042 aa5.61□□□□□ -1.51
VPS13D-207ENST00000476169 PRC1O43663 620 aa5.6□□□□□ -1.51
VPS13D-207ENST00000476169 RNF4P78317 190 aa5.6□□□□□ -1.51
VPS13D-207ENST00000476169 DNAJB8Q8NHS0 232 aa5.6□□□□□ -1.51
VPS13D-207ENST00000476169 PPP1R13LQ8WUF5 828 aa5.6□□□□□ -1.51
VPS13D-207ENST00000476169 FGD4Q96M96 766 aa5.6□□□□□ -1.51
VPS13D-207ENST00000476169 CDC6Q99741 560 aa5.6□□□□□ -1.51
VPS13D-207ENST00000476169 IER2Q9BTL4 223 aa5.6□□□□□ -1.51
VPS13D-207ENST00000476169 YIPF2Q9BWQ6 316 aa5.6□□□□□ -1.51
VPS13D-207ENST00000476169 KLHL25Q9H0H3 589 aa5.6□□□□□ -1.51
VPS13D-207ENST00000476169 ACSS3Q9H6R3 686 aa5.6□□□□□ -1.51
VPS13D-207ENST00000476169 CEP131Q9UPN4 1083 aa5.6□□□□□ -1.51
VPS13D-207ENST00000476169 CD2APQ9Y5K6 639 aa5.6□□□□□ -1.51
VPS13D-207ENST00000476169 TRAV20A0A0B4J274 112 aa5.59□□□□□ -1.51
VPS13D-207ENST00000476169 A0A1W2PQU0 124 aa5.59□□□□□ -1.51
VPS13D-207ENST00000476169 CBFA2T2O43439 604 aa5.59□□□□□ -1.51
VPS13D-207ENST00000476169 SPATA31C1P0DKV0 1188 aa5.59□□□□□ -1.51
VPS13D-207ENST00000476169 ETV3P41162 512 aa5.59□□□□□ -1.51
VPS13D-207ENST00000476169 TBX4P57082 545 aa5.59□□□□□ -1.51
VPS13D-207ENST00000476169 EVA1CP58658 441 aa5.59□□□□□ -1.51
VPS13D-207ENST00000476169 HSP90AA2PQ14568 343 aaPredicted RBP5.59□□□□□ -1.51
VPS13D-207ENST00000476169 C21orf62-AS1Q17RA5 79 aa5.59□□□□□ -1.51
VPS13D-207ENST00000476169 CT47A1Q5JQC4 288 aaPredicted RBP5.59□□□□□ -1.51
VPS13D-207ENST00000476169 NBPF12Q5TAG4 269 aaPredicted RBP5.59□□□□□ -1.51
VPS13D-207ENST00000476169 CDPF1Q6NVV7 123 aa5.59□□□□□ -1.51
VPS13D-207ENST00000476169 LETMD1Q6P1Q0 360 aa5.59□□□□□ -1.51
VPS13D-207ENST00000476169 TREML4Q6UXN2 200 aa5.59□□□□□ -1.51
VPS13D-207ENST00000476169 ADAT2Q7Z6V5 191 aaKnown RBP5.59□□□□□ -1.51
VPS13D-207ENST00000476169 WDR75Q8IWA0 830 aaKnown RBP5.59□□□□□ -1.51
VPS13D-207ENST00000476169 LRRN4CLQ8ND94 238 aa5.59□□□□□ -1.51
VPS13D-207ENST00000476169 KREMEN1Q96MU8 473 aa5.59□□□□□ -1.51
VPS13D-207ENST00000476169 IPO9Q96P70 1041 aaKnown RBP5.59□□□□□ -1.51
VPS13D-207ENST00000476169 AARSD1Q9BTE6 412 aaKnown RBP5.59□□□□□ -1.51
VPS13D-207ENST00000476169 LGR6Q9HBX8 967 aa5.59□□□□□ -1.51
VPS13D-207ENST00000476169 ARHGEF4Q9NR80 690 aa5.59□□□□□ -1.51
VPS13D-207ENST00000476169 APEX2Q9UBZ4 518 aa5.59□□□□□ -1.51
VPS13D-207ENST00000476169 PLAAQ9Y263 795 aa5.59□□□□□ -1.51
VPS13D-207ENST00000476169 CCDC163A0A0D9SF12 145 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 106.4 ms