RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 GIMAP6Q6P9H5 292 aa16.93■□□□□ 0.3
UPF3A-204ENST00000475218 ARPP21Q9UBL0 812 aaPredicted RBP16.93■□□□□ 0.3
UPF3A-204ENST00000475218 CEP290O15078 2479 aa16.93■□□□□ 0.3
UPF3A-204ENST00000475218 DNAH12Q6ZR08 3092 aa16.93■□□□□ 0.3
UPF3A-204ENST00000475218 RANBP2P49792 3224 aaKnown RBP16.93■□□□□ 0.3
UPF3A-204ENST00000475218 ZFYP08048 801 aaPredicted RBP16.92■□□□□ 0.3
UPF3A-204ENST00000475218 XRCC5P13010 732 aaKnown RBP16.92■□□□□ 0.3
UPF3A-204ENST00000475218 RASA1P20936 1047 aa16.92■□□□□ 0.3
UPF3A-204ENST00000475218 PLEKHH3Q7Z736 793 aa16.92■□□□□ 0.3
UPF3A-204ENST00000475218 SOCS4Q8WXH5 440 aa16.92■□□□□ 0.3
UPF3A-204ENST00000475218 NUDT12Q9BQG2 462 aa16.92■□□□□ 0.3
UPF3A-204ENST00000475218 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.92■□□□□ 0.3
UPF3A-204ENST00000475218 EEF2P13639 858 aaKnown RBP16.92■□□□□ 0.3
UPF3A-204ENST00000475218 ANKRD45Q5TZF3 282 aa16.92■□□□□ 0.3
UPF3A-204ENST00000475218 SPICE1Q8N0Z3 855 aa16.92■□□□□ 0.3
UPF3A-204ENST00000475218 VCPKMTQ9H867 229 aa16.92■□□□□ 0.3
UPF3A-204ENST00000475218 STAP2Q9UGK3 403 aa16.92■□□□□ 0.3
UPF3A-204ENST00000475218 ERC2O15083 957 aa16.91■□□□□ 0.3
UPF3A-204ENST00000475218 MNX1P50219 401 aaPredicted RBP16.91■□□□□ 0.3
UPF3A-204ENST00000475218 ZMYM1Q5SVZ6 1142 aa16.91■□□□□ 0.3
UPF3A-204ENST00000475218 STK11IPQ8N1F8 1099 aa16.91■□□□□ 0.3
UPF3A-204ENST00000475218 DDRGK1Q96HY6 314 aa16.91■□□□□ 0.3
UPF3A-204ENST00000475218 ALPK3Q96L96 1907 aa16.9■□□□□ 0.3
UPF3A-204ENST00000475218 FARP2O94887 1054 aaPredicted RBP16.9■□□□□ 0.3
UPF3A-204ENST00000475218 COG2Q14746 738 aa16.9■□□□□ 0.3
UPF3A-204ENST00000475218 LPAR1Q92633 364 aa16.9■□□□□ 0.3
UPF3A-204ENST00000475218 TANGO6Q9C0B7 1094 aa16.9■□□□□ 0.3
UPF3A-204ENST00000475218 FLRT1Q9NZU1 646 aa16.9■□□□□ 0.3
UPF3A-204ENST00000475218 COL11A1P12107 1806 aaPredicted RBP16.9■□□□□ 0.3
UPF3A-204ENST00000475218 MINDY4BA8MYZ0 360 aa16.89■□□□□ 0.3
UPF3A-204ENST00000475218 IGHA2P01877 340 aa16.89■□□□□ 0.3
UPF3A-204ENST00000475218 PTPREP23469 700 aa16.89■□□□□ 0.3
UPF3A-204ENST00000475218 AMOTL1Q8IY63 956 aa16.89■□□□□ 0.3
UPF3A-204ENST00000475218 GCC1Q96CN9 775 aa16.89■□□□□ 0.3
UPF3A-204ENST00000475218 FSD1Q9BTV5 496 aa16.89■□□□□ 0.3
UPF3A-204ENST00000475218 MOV10L1Q9BXT6 1211 aaKnown RBP16.89■□□□□ 0.3
UPF3A-204ENST00000475218 KANSL2Q9H9L4 492 aa16.89■□□□□ 0.3
UPF3A-204ENST00000475218 ARHGEF10LQ9HCE6 1279 aa16.89■□□□□ 0.3
UPF3A-204ENST00000475218 RPTORQ8N122 1335 aa16.89■□□□□ 0.29
UPF3A-204ENST00000475218 ZNF236Q9UL36 1845 aa16.89■□□□□ 0.29
UPF3A-204ENST00000475218 IGKV6D-41A0A0C4DH26 115 aa16.89■□□□□ 0.29
UPF3A-204ENST00000475218 PATL2C9JE40 543 aaKnown RBP16.89■□□□□ 0.29
UPF3A-204ENST00000475218 H0YGN5 161 aa16.89■□□□□ 0.29
UPF3A-204ENST00000475218 PRKAR2AP13861 404 aaKnown RBP16.89■□□□□ 0.29
UPF3A-204ENST00000475218 DSG3P32926 999 aa16.89■□□□□ 0.29
UPF3A-204ENST00000475218 PDE1AP54750 535 aa16.89■□□□□ 0.29
UPF3A-204ENST00000475218 CACNB2Q08289 660 aaPredicted RBP16.89■□□□□ 0.29
UPF3A-204ENST00000475218 MAP2K5Q13163 448 aa16.89■□□□□ 0.29
UPF3A-204ENST00000475218 GRB14Q14449 540 aa16.89■□□□□ 0.29
UPF3A-204ENST00000475218 IFNL3Q8IZI9 196 aa16.89■□□□□ 0.29
UPF3A-204ENST00000475218 DIS3LQ8TF46 1054 aaKnown RBP16.89■□□□□ 0.29
UPF3A-204ENST00000475218 ATG4CQ96DT6 458 aa16.89■□□□□ 0.29
UPF3A-204ENST00000475218 FBXO28Q9NVF7 368 aa16.89■□□□□ 0.29
UPF3A-204ENST00000475218 IGHDP01880 384 aa16.88■□□□□ 0.29
UPF3A-204ENST00000475218 TFRCP02786 760 aaKnown RBP16.88■□□□□ 0.29
UPF3A-204ENST00000475218 GNAT2P19087 354 aa16.88■□□□□ 0.29
UPF3A-204ENST00000475218 RGS2P41220 211 aa16.88■□□□□ 0.29
UPF3A-204ENST00000475218 CCDC129Q6ZRS4 1044 aa16.88■□□□□ 0.29
UPF3A-204ENST00000475218 SMC5Q8IY18 1101 aa16.88■□□□□ 0.29
UPF3A-204ENST00000475218 NPLOC4Q8TAT6 608 aa16.88■□□□□ 0.29
UPF3A-204ENST00000475218 APBA2Q99767 749 aa16.88■□□□□ 0.29
UPF3A-204ENST00000475218 HMX1Q9NP08 348 aaPredicted RBP16.88■□□□□ 0.29
UPF3A-204ENST00000475218 ADAMTS5Q9UNA0 930 aa16.88■□□□□ 0.29
UPF3A-204ENST00000475218 WDR46O15213 610 aaKnown RBP16.87■□□□□ 0.29
UPF3A-204ENST00000475218 CCNA1P78396 465 aa16.87■□□□□ 0.29
UPF3A-204ENST00000475218 EXOC6Q8TAG9 804 aa16.87■□□□□ 0.29
UPF3A-204ENST00000475218 SPATC1LQ9H0A9 340 aa16.87■□□□□ 0.29
UPF3A-204ENST00000475218 HOXC10Q9NYD6 342 aa16.87■□□□□ 0.29
UPF3A-204ENST00000475218 FRMPD3Q5JV73 1810 aa16.87■□□□□ 0.29
UPF3A-204ENST00000475218 SLC15A5A6NIM6 579 aa16.87■□□□□ 0.29
UPF3A-204ENST00000475218 PRDM1O75626 825 aa16.87■□□□□ 0.29
UPF3A-204ENST00000475218 HOXC6P09630 235 aa16.87■□□□□ 0.29
UPF3A-204ENST00000475218 ZKSCAN1P17029 563 aaPredicted RBP16.87■□□□□ 0.29
UPF3A-204ENST00000475218 CCND3P30281 292 aaPredicted RBP16.87■□□□□ 0.29
UPF3A-204ENST00000475218 TDO2P48775 406 aa16.87■□□□□ 0.29
UPF3A-204ENST00000475218 ATP2B2Q01814 1243 aa16.87■□□□□ 0.29
UPF3A-204ENST00000475218 CCAR1Q8IX12 1150 aaKnown RBP16.87■□□□□ 0.29
UPF3A-204ENST00000475218 SH2D4AQ9H788 454 aa16.87■□□□□ 0.29
UPF3A-204ENST00000475218 TACC3Q9Y6A5 838 aa16.87■□□□□ 0.29
UPF3A-204ENST00000475218 MYH4Q9Y623 1939 aa16.86■□□□□ 0.29
UPF3A-204ENST00000475218 FLOT1O75955 427 aa16.86■□□□□ 0.29
UPF3A-204ENST00000475218 TMEM132BQ14DG7 1078 aa16.86■□□□□ 0.29
UPF3A-204ENST00000475218 LHX8Q68G74 356 aa16.86■□□□□ 0.29
UPF3A-204ENST00000475218 PAWRQ96IZ0 340 aaKnown RBP16.86■□□□□ 0.29
UPF3A-204ENST00000475218 NUP88Q99567 741 aaPredicted RBP16.86■□□□□ 0.29
UPF3A-204ENST00000475218 OGDHLQ9ULD0 1010 aa16.86■□□□□ 0.29
UPF3A-204ENST00000475218 APPP05067 770 aa16.85■□□□□ 0.29
UPF3A-204ENST00000475218 ERCC3P19447 782 aa16.85■□□□□ 0.29
UPF3A-204ENST00000475218 VPS53Q5VIR6 699 aa16.85■□□□□ 0.29
UPF3A-204ENST00000475218 WDR78Q5VTH9 848 aa16.85■□□□□ 0.29
UPF3A-204ENST00000475218 TRMT44Q8IYL2 757 aaKnown RBP16.85■□□□□ 0.29
UPF3A-204ENST00000475218 REPS2Q8NFH8 660 aa16.85■□□□□ 0.29
UPF3A-204ENST00000475218 LNPKQ9C0E8 428 aa16.85■□□□□ 0.29
UPF3A-204ENST00000475218 MKNK2Q9HBH9 465 aa16.85■□□□□ 0.29
UPF3A-204ENST00000475218 NYAP2Q9P242 653 aa16.85■□□□□ 0.29
UPF3A-204ENST00000475218 HABP4Q5JVS0 413 aaKnown RBP16.84■□□□□ 0.29
UPF3A-204ENST00000475218 FAM83BQ5T0W9 1011 aa16.84■□□□□ 0.29
UPF3A-204ENST00000475218 MB21D1Q8N884 522 aa16.84■□□□□ 0.29
UPF3A-204ENST00000475218 SHCBP1Q8NEM2 672 aa16.84■□□□□ 0.29
UPF3A-204ENST00000475218 PLIN4Q96Q06 1357 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms