RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 NOL7Q9UMY1 257 aaKnown RBP14.06□□□□□ -0.16
SYNE1-222ENST00000474655 PCDHB6Q9Y5E3 794 aa14.06□□□□□ -0.16
SYNE1-222ENST00000474655 SIPA1L1O43166 1804 aa14.06□□□□□ -0.16
SYNE1-222ENST00000474655 hCG_1642624A0A1W2PR95 340 aa14.05□□□□□ -0.16
SYNE1-222ENST00000474655 CLCN1P35523 988 aa14.05□□□□□ -0.16
SYNE1-222ENST00000474655 GRIPAP1Q4V328 841 aa14.05□□□□□ -0.16
SYNE1-222ENST00000474655 CDC42EP5Q6NZY7 148 aa14.05□□□□□ -0.16
SYNE1-222ENST00000474655 STAG2Q8N3U4 1231 aa14.05□□□□□ -0.16
SYNE1-222ENST00000474655 DBNDD1Q9H9R9 158 aa14.05□□□□□ -0.16
SYNE1-222ENST00000474655 USP40Q9NVE5 1235 aa14.05□□□□□ -0.16
SYNE1-222ENST00000474655 CCDC39Q9UFE4 941 aa14.05□□□□□ -0.16
SYNE1-222ENST00000474655 SRPRBQ9Y5M8 271 aaKnown RBP14.05□□□□□ -0.16
SYNE1-222ENST00000474655 IGKV6D-41A0A0C4DH26 115 aa14.04□□□□□ -0.16
SYNE1-222ENST00000474655 F8W031 263 aaPredicted RBP14.04□□□□□ -0.16
SYNE1-222ENST00000474655 AP5Z1O43299 807 aa14.04□□□□□ -0.16
SYNE1-222ENST00000474655 NPM3O75607 178 aaKnown RBP14.04□□□□□ -0.16
SYNE1-222ENST00000474655 BMP15O95972 392 aa14.04□□□□□ -0.16
SYNE1-222ENST00000474655 TOP1P11387 765 aaKnown RBP14.04□□□□□ -0.16
SYNE1-222ENST00000474655 SYKP43405 635 aa14.04□□□□□ -0.16
SYNE1-222ENST00000474655 KIAA2012Q0VF49 1180 aa14.04□□□□□ -0.16
SYNE1-222ENST00000474655 IQCB1Q15051 598 aa14.04□□□□□ -0.16
SYNE1-222ENST00000474655 SLC35G1Q2M3R5 365 aa14.04□□□□□ -0.16
SYNE1-222ENST00000474655 LUZP1Q86V48 1076 aa14.04□□□□□ -0.16
SYNE1-222ENST00000474655 FBXW7Q969H0 707 aa14.04□□□□□ -0.16
SYNE1-222ENST00000474655 CLIC6Q96NY7 704 aa14.04□□□□□ -0.16
SYNE1-222ENST00000474655 SPZ1Q9BXG8 430 aa14.04□□□□□ -0.16
SYNE1-222ENST00000474655 OSBPL5Q9H0X9 879 aaPredicted RBP14.04□□□□□ -0.16
SYNE1-222ENST00000474655 DNAJC25Q9H1X3 360 aa14.04□□□□□ -0.16
SYNE1-222ENST00000474655 KCNQ5Q9NR82 932 aa14.04□□□□□ -0.16
SYNE1-222ENST00000474655 ANO10Q9NW15 660 aa14.04□□□□□ -0.16
SYNE1-222ENST00000474655 SWAP70Q9UH65 585 aa14.04□□□□□ -0.16
SYNE1-222ENST00000474655 TAOK2Q9UL54 1235 aa14.04□□□□□ -0.16
SYNE1-222ENST00000474655 STX8Q9UNK0 236 aa14.04□□□□□ -0.16
SYNE1-222ENST00000474655 TRIM75PA6NK02 468 aa14.04□□□□□ -0.16
SYNE1-222ENST00000474655 CYTH3O43739 400 aa14.04□□□□□ -0.16
SYNE1-222ENST00000474655 ECE2O60344 883 aa14.04□□□□□ -0.16
SYNE1-222ENST00000474655 VEGFAP15692 232 aaPredicted RBP14.04□□□□□ -0.16
SYNE1-222ENST00000474655 CALML3P27482 149 aa14.04□□□□□ -0.16
SYNE1-222ENST00000474655 CRKP46108 304 aa14.04□□□□□ -0.16
SYNE1-222ENST00000474655 TRAPPC10P48553 1259 aa14.04□□□□□ -0.16
SYNE1-222ENST00000474655 SCNN1DP51172 638 aa14.04□□□□□ -0.16
SYNE1-222ENST00000474655 EARS2Q5JPH6 523 aaKnown RBP14.04□□□□□ -0.16
SYNE1-222ENST00000474655 CEP95Q96GE4 821 aa14.04□□□□□ -0.16
SYNE1-222ENST00000474655 EHD4Q9H223 541 aa14.04□□□□□ -0.16
SYNE1-222ENST00000474655 MYH4Q9Y623 1939 aa14.03□□□□□ -0.16
SYNE1-222ENST00000474655 SUPT20HQ8NEM7 779 aa14.03□□□□□ -0.16
SYNE1-222ENST00000474655 SERPINB13Q9UIV8 391 aa14.03□□□□□ -0.16
SYNE1-222ENST00000474655 TUBE1Q9UJT0 475 aa14.03□□□□□ -0.16
SYNE1-222ENST00000474655 FAM205CA6NFA0 338 aa14.02□□□□□ -0.16
SYNE1-222ENST00000474655 M0R2N6 131 aa14.02□□□□□ -0.16
SYNE1-222ENST00000474655 BAG6P46379 1132 aa14.02□□□□□ -0.16
SYNE1-222ENST00000474655 PICALMQ13492 652 aa14.02□□□□□ -0.16
SYNE1-222ENST00000474655 GALNT17Q6IS24 598 aa14.02□□□□□ -0.16
SYNE1-222ENST00000474655 C11orf57Q6ZUT1 292 aaPredicted RBP14.02□□□□□ -0.16
SYNE1-222ENST00000474655 DAGLBQ8NCG7 672 aa14.02□□□□□ -0.16
SYNE1-222ENST00000474655 SLC16A10Q8TF71 515 aa14.02□□□□□ -0.16
SYNE1-222ENST00000474655 BPIFA3Q9BQP9 254 aa14.02□□□□□ -0.16
SYNE1-222ENST00000474655 IDI2Q9BXS1 227 aa14.02□□□□□ -0.16
SYNE1-222ENST00000474655 MTMR4Q9NYA4 1195 aa14.02□□□□□ -0.16
SYNE1-222ENST00000474655 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.02□□□□□ -0.16
SYNE1-222ENST00000474655 SERPINA10Q9UK55 444 aa14.02□□□□□ -0.16
SYNE1-222ENST00000474655 KCNH3Q9ULD8 1083 aa14.02□□□□□ -0.16
SYNE1-222ENST00000474655 NLRP5P59047 1200 aa14.01□□□□□ -0.17
SYNE1-222ENST00000474655 RTN4Q9NQC3 1192 aaKnown RBP14.01□□□□□ -0.17
SYNE1-222ENST00000474655 ZKSCAN5Q9Y2L8 839 aa14.01□□□□□ -0.17
SYNE1-222ENST00000474655 KLRF2D3W0D1 207 aa14.01□□□□□ -0.17
SYNE1-222ENST00000474655 PARP1P09874 1014 aaKnown RBP14.01□□□□□ -0.17
SYNE1-222ENST00000474655 SNHG28P0DPA3 235 aa14.01□□□□□ -0.17
SYNE1-222ENST00000474655 SHMT1P34896 483 aa14.01□□□□□ -0.17
SYNE1-222ENST00000474655 GRIN1Q05586 938 aa14.01□□□□□ -0.17
SYNE1-222ENST00000474655 KRBA2Q6ZNG9 492 aa14.01□□□□□ -0.17
SYNE1-222ENST00000474655 FERMT2Q96AC1 680 aa14.01□□□□□ -0.17
SYNE1-222ENST00000474655 DHX36Q9H2U1 1008 aaKnown RBP14.01□□□□□ -0.17
SYNE1-222ENST00000474655 BARHL2Q9NY43 387 aa14.01□□□□□ -0.17
SYNE1-222ENST00000474655 PCDHA4Q9UN74 947 aa14.01□□□□□ -0.17
SYNE1-222ENST00000474655 MDM2Q00987 491 aaPredicted RBP14□□□□□ -0.17
SYNE1-222ENST00000474655 AOC3Q16853 763 aa14□□□□□ -0.17
SYNE1-222ENST00000474655 SARM1Q6SZW1 724 aa14□□□□□ -0.17
SYNE1-222ENST00000474655 KIAA0825Q8IV33 1275 aa14□□□□□ -0.17
SYNE1-222ENST00000474655 CEP57L1Q8IYX8 460 aa14□□□□□ -0.17
SYNE1-222ENST00000474655 BLIDQ8IZY5 108 aa14□□□□□ -0.17
SYNE1-222ENST00000474655 CCDC148Q8NFR7 591 aa14□□□□□ -0.17
SYNE1-222ENST00000474655 PDGFDQ9GZP0 370 aaPredicted RBP14□□□□□ -0.17
SYNE1-222ENST00000474655 NAT10Q9H0A0 1025 aaKnown RBP14□□□□□ -0.17
SYNE1-222ENST00000474655 FAM13BQ9NYF5 915 aa14□□□□□ -0.17
SYNE1-222ENST00000474655 HLA-DOAP06340 250 aa13.99□□□□□ -0.17
SYNE1-222ENST00000474655 AKR1B1P15121 316 aa13.99□□□□□ -0.17
SYNE1-222ENST00000474655 NLRP12P59046 1061 aa13.99□□□□□ -0.17
SYNE1-222ENST00000474655 ATP2C1P98194 919 aaPredicted RBP13.99□□□□□ -0.17
SYNE1-222ENST00000474655 NFIAQ12857 509 aa13.99□□□□□ -0.17
SYNE1-222ENST00000474655 LONRF3Q496Y0 759 aa13.99□□□□□ -0.17
SYNE1-222ENST00000474655 NOM1Q5C9Z4 860 aaKnown RBP13.99□□□□□ -0.17
SYNE1-222ENST00000474655 TTC38Q5R3I4 469 aa13.99□□□□□ -0.17
SYNE1-222ENST00000474655 WWC2Q6AWC2 1192 aa13.99□□□□□ -0.17
SYNE1-222ENST00000474655 TYW1BQ6NUM6 668 aa13.99□□□□□ -0.17
SYNE1-222ENST00000474655 PLA2G4DQ86XP0 818 aa13.99□□□□□ -0.17
SYNE1-222ENST00000474655 DHX40Q8IX18 779 aaKnown RBP13.99□□□□□ -0.17
SYNE1-222ENST00000474655 ERCC4Q92889 916 aaPredicted RBP13.99□□□□□ -0.17
SYNE1-222ENST00000474655 CCDC17Q96LX7 622 aa13.99□□□□□ -0.17
SYNE1-222ENST00000474655 PSMD1Q99460 953 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms