RNA–Protein interactions for RNA: ENST00000474637.5

GAPVD1-216, Transcript of GTPase activating protein and VPS9 domains 1, human

TSL 2

Gene GAPVD1, Length 2,545 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GAPVD1-216	ENST00000474637	PRRT2	Q7Z6L0	340 aa	Predicted RBP	4.89	□□□□□ -1.63
GAPVD1-216	ENST00000474637	ANKRD23	Q86SG2	305 aa		4.89	□□□□□ -1.63
GAPVD1-216	ENST00000474637	PROCA1	Q8NCQ7	364 aa	Predicted RBP	4.89	□□□□□ -1.63
GAPVD1-216	ENST00000474637	ZNF280C	Q8ND82	737 aa		4.89	□□□□□ -1.63
GAPVD1-216	ENST00000474637	MKNK2	Q9HBH9	465 aa		4.89	□□□□□ -1.63
GAPVD1-216	ENST00000474637	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	4.89	□□□□□ -1.63
GAPVD1-216	ENST00000474637	ANAPC4	Q9UJX5	808 aa		4.89	□□□□□ -1.63
GAPVD1-216	ENST00000474637	ZBTB21	Q9ULJ3	1066 aa		4.89	□□□□□ -1.63
GAPVD1-216	ENST00000474637	SLC45A1	Q9Y2W3	748 aa		4.89	□□□□□ -1.63
GAPVD1-216	ENST00000474637	R3HCC1	Q9Y3T6	440 aa	Known RBP	4.89	□□□□□ -1.63
GAPVD1-216	ENST00000474637	FAM196B	A6NMK8	535 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	IRF6	O14896	467 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	GDF11	O95390	407 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	CAST	P20810	708 aa	Known RBP	4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	USP14	P54578	494 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	CCDC173	Q0VFZ6	552 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	SLC4A8	Q2Y0W8	1093 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	SH3D19	Q5HYK7	790 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	USP17L2	Q6R6M4	530 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	ZNF444	Q8N0Y2	327 aa	Predicted RBP	4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	MS4A4A	Q96JQ5	239 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	PPP1R9B	Q96SB3	815 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	RNF41	Q9H4P4	317 aa	Predicted RBP	4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	SH2D4A	Q9H788	454 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	ARHGEF10L	Q9HCE6	1279 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	RNF186	Q9NXI6	227 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	LAMA4	Q16363	1823 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	LOC285556	D6RIA3	1793 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	USP17L10	C9JJH3	530 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	MPHOSPH10	O00566	681 aa	Known RBP	4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	GADD45B	O75293	160 aa	Predicted RBP	4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	GH2	P01242	217 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	MSN	P26038	577 aa	Known RBP	4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	RRP1B	Q14684	758 aa	Known RBP	4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	ADCK5	Q3MIX3	580 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	NOM1	Q5C9Z4	860 aa	Known RBP	4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	LRSAM1	Q6UWE0	723 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	RUFY3	Q7L099	469 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	ZNF589	Q86UQ0	364 aa	Predicted RBP	4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	SP7	Q8TDD2	431 aa	Predicted RBP	4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	BRI3BP	Q8WY22	251 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	DYNLL2	Q96FJ2	89 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	TTC14	Q96N46	770 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	ZIC5	Q96T25	663 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	ZFYVE28	Q9HCC9	887 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	TMOD4	Q9NZQ9	345 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	PNMA3	Q9UL41	463 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	SYNPO2	Q9UMS6	1093 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	LIMCH1	Q9UPQ0	1083 aa		4.88	□□□□□ -1.63
GAPVD1-216	ENST00000474637	CYP2D7	A0A087X1C5	515 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	ZNF213	O14771	459 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	ORC4	O43929	436 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	FGA	P02671	866 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	OSBP	P22059	807 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	BACE1	P56817	501 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	IMMT	Q16891	758 aa	Known RBP	4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	CCDC178	Q5BJE1	867 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	GADL1	Q6ZQY3	521 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	RNF214	Q8ND24	703 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	GTF3C2	Q8WUA4	911 aa	Predicted RBP	4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	STAG1	Q8WVM7	1258 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	C12orf42	Q96LP6	360 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	PARK7	Q99497	189 aa	Known RBP	4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	FEZ1	Q99689	392 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	KANSL2	Q9H9L4	492 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	PDRG1	Q9NUG6	133 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	AGTPBP1	Q9UPW5	1226 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	PTPRF	P10586	1907 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	PLIN4	Q96Q06	1357 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	TRIM75P	A6NK02	468 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	BTBD19	C9JJ37	291 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	FOXN1	O15353	648 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	FOXP2	O15409	715 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	TRPA1	O75762	1119 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	MBD3	O95983	291 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	FGR	P09769	529 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	TSPY3	P0CV98	308 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	TSPY8	P0CW00	308 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	SLURP2	P0DP57	97 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	HSPA8	P11142	646 aa	Known RBP	4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	AKR1B1	P15121	316 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	RASA1	P20936	1047 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	SYT1	P21579	422 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	GUCY1A2	P33402	732 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	ICA1	Q05084	483 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	SPP2	Q13103	211 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	SEPT2	Q15019	361 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	NECTIN1	Q15223	517 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	VPS53	Q5VIR6	699 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	SLC44A5	Q8NCS7	719 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	JAKMIP1	Q96N16	626 aa	Known RBP	4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	KIAA1683	Q9H0B3	1180 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	NYAP2	Q9P242	653 aa		4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	GREB1L	Q9C091	1923 aa	Predicted RBP	4.87	□□□□□ -1.63
GAPVD1-216	ENST00000474637	PDHX	O00330	501 aa		4.86	□□□□□ -1.63
GAPVD1-216	ENST00000474637	IGF2BP3	O00425	579 aa	Known RBP eCLIP	4.86	□□□□□ -1.63
GAPVD1-216	ENST00000474637	STX6	O43752	255 aa		4.86	□□□□□ -1.63
GAPVD1-216	ENST00000474637	LARGE1	O95461	756 aa		4.86	□□□□□ -1.63
GAPVD1-216	ENST00000474637	ZSCAN22	P10073	491 aa	Predicted RBP	4.86	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms