RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 APBA2Q99767 749 aa22.62■■□□□ 1.21
CCDC88B-206ENST00000473405 HMX1Q9NP08 348 aaPredicted RBP22.62■■□□□ 1.21
CCDC88B-206ENST00000473405 PCDHB15Q9Y5E8 787 aa22.62■■□□□ 1.21
CCDC88B-206ENST00000473405 ZKSCAN1P17029 563 aaPredicted RBP22.61■■□□□ 1.21
CCDC88B-206ENST00000473405 CTR9Q6PD62 1173 aa22.61■■□□□ 1.21
CCDC88B-206ENST00000473405 MNX1P50219 401 aaPredicted RBP22.6■■□□□ 1.21
CCDC88B-206ENST00000473405 CCNA1P78396 465 aa22.6■■□□□ 1.21
CCDC88B-206ENST00000473405 ICA1Q05084 483 aa22.6■■□□□ 1.21
CCDC88B-206ENST00000473405 TRMT44Q8IYL2 757 aaKnown RBP22.6■■□□□ 1.21
CCDC88B-206ENST00000473405 GPATCH3Q96I76 525 aa22.6■■□□□ 1.21
CCDC88B-206ENST00000473405 PAWRQ96IZ0 340 aaKnown RBP22.6■■□□□ 1.21
CCDC88B-206ENST00000473405 STRBPQ96SI9 672 aaKnown RBP22.6■■□□□ 1.21
CCDC88B-206ENST00000473405 TMX2Q9Y320 296 aa22.6■■□□□ 1.21
CCDC88B-206ENST00000473405 LAMA2P24043 3122 aaKnown RBP22.59■■□□□ 1.21
CCDC88B-206ENST00000473405 CACNB2Q08289 660 aaPredicted RBP22.59■■□□□ 1.21
CCDC88B-206ENST00000473405 AMOTL1Q8IY63 956 aa22.59■■□□□ 1.21
CCDC88B-206ENST00000473405 ANKLE1Q8NAG6 615 aa22.59■■□□□ 1.21
CCDC88B-206ENST00000473405 OSBP2Q969R2 916 aa22.59■■□□□ 1.21
CCDC88B-206ENST00000473405 DDRGK1Q96HY6 314 aa22.59■■□□□ 1.21
CCDC88B-206ENST00000473405 CCDC17Q96LX7 622 aa22.59■■□□□ 1.21
CCDC88B-206ENST00000473405 TANGO6Q9C0B7 1094 aa22.59■■□□□ 1.21
CCDC88B-206ENST00000473405 FXR1P51114 621 aaKnown RBP eCLIP22.58■■□□□ 1.21
CCDC88B-206ENST00000473405 RRP1P56182 461 aaKnown RBP22.58■■□□□ 1.21
CCDC88B-206ENST00000473405 MAP2K5Q13163 448 aa22.58■■□□□ 1.21
CCDC88B-206ENST00000473405 LPAR1Q92633 364 aa22.58■■□□□ 1.21
CCDC88B-206ENST00000473405 ARHGEF10LQ9HCE6 1279 aa22.58■■□□□ 1.21
CCDC88B-206ENST00000473405 CWC22Q9HCG8 908 aaKnown RBP22.58■■□□□ 1.21
CCDC88B-206ENST00000473405 ARPP21Q9UBL0 812 aaPredicted RBP22.58■■□□□ 1.21
CCDC88B-206ENST00000473405 OGDHLQ9ULD0 1010 aa22.58■■□□□ 1.21
CCDC88B-206ENST00000473405 ROBO3Q96MS0 1386 aa22.58■■□□□ 1.21
CCDC88B-206ENST00000473405 GSG1L2A8MUP6 293 aa22.57■■□□□ 1.2
CCDC88B-206ENST00000473405 PTPREP23469 700 aa22.57■■□□□ 1.2
CCDC88B-206ENST00000473405 GRB14Q14449 540 aa22.57■■□□□ 1.2
CCDC88B-206ENST00000473405 COG2Q14746 738 aa22.57■■□□□ 1.2
CCDC88B-206ENST00000473405 WDR78Q5VTH9 848 aa22.57■■□□□ 1.2
CCDC88B-206ENST00000473405 CHRDL2Q6WN34 429 aa22.57■■□□□ 1.2
CCDC88B-206ENST00000473405 SPICE1Q8N0Z3 855 aa22.57■■□□□ 1.2
CCDC88B-206ENST00000473405 APPBP2Q92624 585 aa22.57■■□□□ 1.2
CCDC88B-206ENST00000473405 VCPKMTQ9H867 229 aa22.57■■□□□ 1.2
CCDC88B-206ENST00000473405 FLRT1Q9NZU1 646 aa22.57■■□□□ 1.2
CCDC88B-206ENST00000473405 SLC15A5A6NIM6 579 aa22.56■■□□□ 1.2
CCDC88B-206ENST00000473405 GLRX3O76003 335 aaKnown RBP22.56■■□□□ 1.2
CCDC88B-206ENST00000473405 NECAB2Q7Z6G3 386 aa22.56■■□□□ 1.2
CCDC88B-206ENST00000473405 OTUD7AQ8TE49 926 aaPredicted RBP22.56■■□□□ 1.2
CCDC88B-206ENST00000473405 SH2D4AQ9H788 454 aa22.56■■□□□ 1.2
CCDC88B-206ENST00000473405 NR2E3Q9Y5X4 410 aa22.56■■□□□ 1.2
CCDC88B-206ENST00000473405 MYH4Q9Y623 1939 aa22.56■■□□□ 1.2
CCDC88B-206ENST00000473405 TTC41PQ6P2S7 1318 aa22.56■■□□□ 1.2
CCDC88B-206ENST00000473405 RNF113AO15541 343 aaKnown RBP22.55■■□□□ 1.2
CCDC88B-206ENST00000473405 HOXC6P09630 235 aa22.55■■□□□ 1.2
CCDC88B-206ENST00000473405 EEF2P13639 858 aaKnown RBP22.55■■□□□ 1.2
CCDC88B-206ENST00000473405 CCND3P30281 292 aaPredicted RBP22.55■■□□□ 1.2
CCDC88B-206ENST00000473405 SBK1Q52WX2 424 aa22.55■■□□□ 1.2
CCDC88B-206ENST00000473405 PI4K2BQ8TCG2 481 aa22.55■■□□□ 1.2
CCDC88B-206ENST00000473405 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.55■■□□□ 1.2
CCDC88B-206ENST00000473405 MOV10L1Q9BXT6 1211 aaKnown RBP22.55■■□□□ 1.2
CCDC88B-206ENST00000473405 PRO3102Q9H379 93 aa22.55■■□□□ 1.2
CCDC88B-206ENST00000473405 EPB41L4AQ9HCS5 686 aaPredicted RBP22.55■■□□□ 1.2
CCDC88B-206ENST00000473405 HOXC10Q9NYD6 342 aa22.55■■□□□ 1.2
CCDC88B-206ENST00000473405 M0R2C6 588 aa22.54■■□□□ 1.2
CCDC88B-206ENST00000473405 EVI5O60447 810 aa22.54■■□□□ 1.2
CCDC88B-206ENST00000473405 LHX8Q68G74 356 aa22.54■■□□□ 1.2
CCDC88B-206ENST00000473405 GIMAP6Q6P9H5 292 aa22.54■■□□□ 1.2
CCDC88B-206ENST00000473405 SPATC1LQ9H0A9 340 aa22.54■■□□□ 1.2
CCDC88B-206ENST00000473405 RBM27Q9P2N5 1060 aaKnown RBP22.54■■□□□ 1.2
CCDC88B-206ENST00000473405 IVNS1ABPQ9Y6Y0 642 aa22.54■■□□□ 1.2
CCDC88B-206ENST00000473405 ZNFX1Q9P2E3 1918 aaKnown RBP22.53■■□□□ 1.2
CCDC88B-206ENST00000473405 WDR46O15213 610 aaKnown RBP22.53■■□□□ 1.2
CCDC88B-206ENST00000473405 GPAA1O43292 621 aa22.53■■□□□ 1.2
CCDC88B-206ENST00000473405 FLOT1O75955 427 aa22.53■■□□□ 1.2
CCDC88B-206ENST00000473405 IGHA2P01877 340 aa22.53■■□□□ 1.2
CCDC88B-206ENST00000473405 ZFYP08048 801 aaPredicted RBP22.53■■□□□ 1.2
CCDC88B-206ENST00000473405 RASA1P20936 1047 aa22.53■■□□□ 1.2
CCDC88B-206ENST00000473405 DSG3P32926 999 aa22.53■■□□□ 1.2
CCDC88B-206ENST00000473405 MB21D1Q8N884 522 aa22.53■■□□□ 1.2
CCDC88B-206ENST00000473405 NPLOC4Q8TAT6 608 aa22.53■■□□□ 1.2
CCDC88B-206ENST00000473405 ATG4CQ96DT6 458 aa22.53■■□□□ 1.2
CCDC88B-206ENST00000473405 NBPF3Q9H094 633 aa22.53■■□□□ 1.2
CCDC88B-206ENST00000473405 KANSL2Q9H9L4 492 aa22.53■■□□□ 1.2
CCDC88B-206ENST00000473405 PCDH10Q9P2E7 1040 aa22.53■■□□□ 1.2
CCDC88B-206ENST00000473405 SHCBP1Q8NEM2 672 aa22.52■■□□□ 1.2
CCDC88B-206ENST00000473405 PFASO15067 1338 aa22.52■■□□□ 1.2
CCDC88B-206ENST00000473405 SALL3Q9BXA9 1300 aa22.52■■□□□ 1.2
CCDC88B-206ENST00000473405 PLXNA1Q9UIW2 1896 aa22.51■■□□□ 1.19
CCDC88B-206ENST00000473405 ERCC3P19447 782 aa22.51■■□□□ 1.19
CCDC88B-206ENST00000473405 ADORA2AP29274 412 aa22.51■■□□□ 1.19
CCDC88B-206ENST00000473405 C11orf49Q9H6J7 331 aa22.51■■□□□ 1.19
CCDC88B-206ENST00000473405 ATP2B2Q01814 1243 aa22.5■■□□□ 1.19
CCDC88B-206ENST00000473405 CRBNQ96SW2 442 aa22.5■■□□□ 1.19
CCDC88B-206ENST00000473405 FBXO28Q9NVF7 368 aa22.5■■□□□ 1.19
CCDC88B-206ENST00000473405 MINDY4BA8MYZ0 360 aa22.49■■□□□ 1.19
CCDC88B-206ENST00000473405 ERC2O15083 957 aa22.49■■□□□ 1.19
CCDC88B-206ENST00000473405 STRNO43815 780 aa22.49■■□□□ 1.19
CCDC88B-206ENST00000473405 COL6A1P12109 1028 aa22.49■■□□□ 1.19
CCDC88B-206ENST00000473405 GNAT2P19087 354 aa22.49■■□□□ 1.19
CCDC88B-206ENST00000473405 MX1P20591 662 aa22.49■■□□□ 1.19
CCDC88B-206ENST00000473405 TMEM132BQ14DG7 1078 aa22.49■■□□□ 1.19
CCDC88B-206ENST00000473405 MFSD14CQ5VZR4 134 aa22.49■■□□□ 1.19
CCDC88B-206ENST00000473405 STK11IPQ8N1F8 1099 aa22.49■■□□□ 1.19
CCDC88B-206ENST00000473405 SEC62Q99442 399 aaKnown RBP22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms